RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 ERGIC2Q96RQ1 377 aa11.08□□□□□ -0.64
VPS53-202ENST00000389040 WDR24Q96S15 920 aa11.08□□□□□ -0.64
VPS53-202ENST00000389040 ADPGKQ9BRR6 497 aa11.08□□□□□ -0.64
VPS53-202ENST00000389040 LZTFL1Q9NQ48 299 aa11.08□□□□□ -0.64
VPS53-202ENST00000389040 CGNQ9P2M7 1197 aaKnown RBP11.08□□□□□ -0.64
VPS53-202ENST00000389040 TBX20Q9UMR3 447 aa11.08□□□□□ -0.64
VPS53-202ENST00000389040 PIN4Q9Y237 131 aaKnown RBP11.08□□□□□ -0.64
VPS53-202ENST00000389040 TNFSF13BQ9Y275 285 aa11.08□□□□□ -0.64
VPS53-202ENST00000389040 ZMYM2Q9UBW7 1377 aa11.08□□□□□ -0.64
VPS53-202ENST00000389040 UBE4BO95155 1302 aa11.08□□□□□ -0.64
VPS53-202ENST00000389040 C9IYK1 514 aa11.07□□□□□ -0.64
VPS53-202ENST00000389040 K7ENM7 598 aa11.07□□□□□ -0.64
VPS53-202ENST00000389040 TOM1L1O75674 476 aa11.07□□□□□ -0.64
VPS53-202ENST00000389040 PPP1R37O75864 691 aa11.07□□□□□ -0.64
VPS53-202ENST00000389040 KLK7P49862 253 aa11.07□□□□□ -0.64
VPS53-202ENST00000389040 POU5F1Q01860 360 aaKnown RBP11.07□□□□□ -0.64
VPS53-202ENST00000389040 CACNB1Q02641 598 aaPredicted RBP11.07□□□□□ -0.64
VPS53-202ENST00000389040 NAA30Q147X3 362 aaPredicted RBP11.07□□□□□ -0.64
VPS53-202ENST00000389040 DCAF4L1Q3SXM0 396 aa11.07□□□□□ -0.64
VPS53-202ENST00000389040 FIGNQ5HY92 759 aa11.07□□□□□ -0.64
VPS53-202ENST00000389040 TWF2Q6IBS0 349 aaKnown RBP11.07□□□□□ -0.64
VPS53-202ENST00000389040 SLFN12LQ6IEE8 588 aa11.07□□□□□ -0.64
VPS53-202ENST00000389040 CHRDL2Q6WN34 429 aa11.07□□□□□ -0.64
VPS53-202ENST00000389040 SFR1Q86XK3 245 aa11.07□□□□□ -0.64
VPS53-202ENST00000389040 NPAS4Q8IUM7 802 aa11.07□□□□□ -0.64
VPS53-202ENST00000389040 MAP4K3Q8IVH8 894 aa11.07□□□□□ -0.64
VPS53-202ENST00000389040 CRIPAKQ8N1N5 446 aa11.07□□□□□ -0.64
VPS53-202ENST00000389040 ACRBPQ8NEB7 543 aa11.07□□□□□ -0.64
VPS53-202ENST00000389040 IQCDQ96DY2 449 aa11.07□□□□□ -0.64
VPS53-202ENST00000389040 PCMTD1Q96MG8 357 aaPredicted RBP11.07□□□□□ -0.64
VPS53-202ENST00000389040 FGFBP2Q9BYJ0 223 aa11.07□□□□□ -0.64
VPS53-202ENST00000389040 NDST4Q9H3R1 872 aa11.07□□□□□ -0.64
VPS53-202ENST00000389040 TMEM161AQ9NX61 479 aa11.07□□□□□ -0.64
VPS53-202ENST00000389040 TBC1D7Q9P0N9 293 aa11.07□□□□□ -0.64
VPS53-202ENST00000389040 LTBP2Q14767 1821 aa11.07□□□□□ -0.64
VPS53-202ENST00000389040 ADGRA3Q8IWK6 1321 aa11.07□□□□□ -0.64
VPS53-202ENST00000389040 TRIP12Q14669 1992 aaPredicted RBP11.07□□□□□ -0.64
VPS53-202ENST00000389040 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.07□□□□□ -0.64
VPS53-202ENST00000389040 A0A1W2PQJ5 194 aa11.07□□□□□ -0.64
VPS53-202ENST00000389040 KIAA0391O15091 583 aaKnown RBP11.07□□□□□ -0.64
VPS53-202ENST00000389040 KIF5CO60282 957 aa11.07□□□□□ -0.64
VPS53-202ENST00000389040 CSDE1O75534 798 aaKnown RBP11.07□□□□□ -0.64
VPS53-202ENST00000389040 URI1O94763 535 aaPredicted RBP11.07□□□□□ -0.64
VPS53-202ENST00000389040 ATP2A2P16615 1042 aaKnown RBP11.07□□□□□ -0.64
VPS53-202ENST00000389040 ARF4P18085 180 aaPredicted RBP11.07□□□□□ -0.64
VPS53-202ENST00000389040 SMAD3P84022 425 aaKnown RBP11.07□□□□□ -0.64
VPS53-202ENST00000389040 FKBP3Q00688 224 aaKnown RBP11.07□□□□□ -0.64
VPS53-202ENST00000389040 ATF7IP2Q5U623 682 aa11.07□□□□□ -0.64
VPS53-202ENST00000389040 MRPL10Q7Z7H8 261 aaKnown RBP11.07□□□□□ -0.64
VPS53-202ENST00000389040 RTN4RL1Q86UN2 441 aaPredicted RBP11.07□□□□□ -0.64
VPS53-202ENST00000389040 PDCL2Q8N4E4 241 aa11.07□□□□□ -0.64
VPS53-202ENST00000389040 SCFD1Q8WVM8 642 aa11.07□□□□□ -0.64
VPS53-202ENST00000389040 ZNF668Q96K58 619 aaPredicted RBP11.07□□□□□ -0.64
VPS53-202ENST00000389040 ACCSQ96QU6 501 aa11.07□□□□□ -0.64
VPS53-202ENST00000389040 CHP1Q99653 195 aa11.07□□□□□ -0.64
VPS53-202ENST00000389040 ACO2Q99798 780 aaKnown RBP11.07□□□□□ -0.64
VPS53-202ENST00000389040 OSBPL7Q9BZF2 842 aa11.07□□□□□ -0.64
VPS53-202ENST00000389040 PCDHB7Q9Y5E2 793 aa11.07□□□□□ -0.64
VPS53-202ENST00000389040 TANC1Q9C0D5 1861 aa11.07□□□□□ -0.64
VPS53-202ENST00000389040 ARID2Q68CP9 1835 aa11.06□□□□□ -0.64
VPS53-202ENST00000389040 A0A0U1RQJ8 604 aa11.06□□□□□ -0.64
VPS53-202ENST00000389040 ZBBXA8MT70 800 aa11.06□□□□□ -0.64
VPS53-202ENST00000389040 GJB5O95377 273 aa11.06□□□□□ -0.64
VPS53-202ENST00000389040 ZBED6P86452 979 aa11.06□□□□□ -0.64
VPS53-202ENST00000389040 MEA1Q16626 185 aa11.06□□□□□ -0.64
VPS53-202ENST00000389040 BMT2Q1RMZ1 405 aa11.06□□□□□ -0.64
VPS53-202ENST00000389040 ARHGAP29Q52LW3 1261 aa11.06□□□□□ -0.64
VPS53-202ENST00000389040 WDR59Q6PJI9 974 aa11.06□□□□□ -0.64
VPS53-202ENST00000389040 GOLGA5Q8TBA6 731 aa11.06□□□□□ -0.64
VPS53-202ENST00000389040 TMEM174Q8WUU8 243 aa11.06□□□□□ -0.64
VPS53-202ENST00000389040 ATRIPQ8WXE1 791 aa11.06□□□□□ -0.64
VPS53-202ENST00000389040 CEP63Q96MT8 703 aa11.06□□□□□ -0.64
VPS53-202ENST00000389040 RAD9AQ99638 391 aa11.06□□□□□ -0.64
VPS53-202ENST00000389040 TRIM6Q9C030 488 aaPredicted RBP11.06□□□□□ -0.64
VPS53-202ENST00000389040 POLD4Q9HCU8 107 aa11.06□□□□□ -0.64
VPS53-202ENST00000389040 PTPRHQ9HD43 1115 aa11.06□□□□□ -0.64
VPS53-202ENST00000389040 FAM105AQ9NUU6 356 aa11.06□□□□□ -0.64
VPS53-202ENST00000389040 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.06□□□□□ -0.64
VPS53-202ENST00000389040 INSL6Q9Y581 213 aa11.06□□□□□ -0.64
VPS53-202ENST00000389040 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.06□□□□□ -0.64
VPS53-202ENST00000389040 EPN1Q9Y6I3 576 aaPredicted RBP11.06□□□□□ -0.64
VPS53-202ENST00000389040 V9GYY5 206 aaPredicted RBP11.06□□□□□ -0.64
VPS53-202ENST00000389040 MGEA5O60502 916 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 NDUFA10O95299 355 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 GCNT3O95395 438 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 GNA14O95837 355 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 MCF2P10911 925 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 PROZP22891 400 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 TMEM132AQ24JP5 1023 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 C9orf50Q5SZB4 431 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 EPM2AIP1Q7L775 607 aaPredicted RBP11.05□□□□□ -0.64
VPS53-202ENST00000389040 TAS1R3Q7RTX0 852 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 ECHDC2Q86YB7 292 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 HERC6Q8IVU3 1022 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 NELFCDQ8IXH7 590 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 ZNF397Q8NF99 534 aaPredicted RBP11.05□□□□□ -0.64
VPS53-202ENST00000389040 TSPAN18Q96SJ8 248 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 KIFC3Q9BVG8 833 aa11.05□□□□□ -0.64
VPS53-202ENST00000389040 IRX2Q9BZI1 471 aaPredicted RBP11.05□□□□□ -0.64
VPS53-202ENST00000389040 KCTD10Q9H3F6 313 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms