RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 CHST7Q9NS84 486 aa22.58■■□□□ 1.21
UPF3A-202ENST00000375299 K7ENM7 598 aa22.57■■□□□ 1.2
UPF3A-202ENST00000375299 PIK3CDO00329 1044 aa22.57■■□□□ 1.2
UPF3A-202ENST00000375299 LIN7AO14910 233 aaPredicted RBP22.57■■□□□ 1.2
UPF3A-202ENST00000375299 HIP1RO75146 1068 aa22.57■■□□□ 1.2
UPF3A-202ENST00000375299 MAN1A1P33908 653 aa22.57■■□□□ 1.2
UPF3A-202ENST00000375299 ICA1Q05084 483 aa22.57■■□□□ 1.2
UPF3A-202ENST00000375299 DOK7Q18PE1 504 aa22.57■■□□□ 1.2
UPF3A-202ENST00000375299 NSMFQ6X4W1 530 aa22.57■■□□□ 1.2
UPF3A-202ENST00000375299 PPP1R21Q6ZMI0 780 aa22.57■■□□□ 1.2
UPF3A-202ENST00000375299 ZNF622Q969S3 477 aaKnown RBP eCLIP22.57■■□□□ 1.22e-6■■■□□ 15.3
UPF3A-202ENST00000375299 TXLNGQ9NUQ3 528 aa22.57■■□□□ 1.2
UPF3A-202ENST00000375299 EP400Q96L91 3159 aa22.57■■□□□ 1.2
UPF3A-202ENST00000375299 HGSO14964 777 aaPredicted RBP22.57■■□□□ 1.2
UPF3A-202ENST00000375299 CYP26A1O43174 497 aa22.57■■□□□ 1.2
UPF3A-202ENST00000375299 CETPP11597 493 aa22.57■■□□□ 1.2
UPF3A-202ENST00000375299 TAC1P20366 129 aa22.57■■□□□ 1.2
UPF3A-202ENST00000375299 SATB1Q01826 763 aa22.57■■□□□ 1.2
UPF3A-202ENST00000375299 C1orf220Q5T0J3 134 aa22.57■■□□□ 1.2
UPF3A-202ENST00000375299 HHIPL2Q6UWX4 724 aa22.57■■□□□ 1.2
UPF3A-202ENST00000375299 SLC47A2Q86VL8 602 aa22.57■■□□□ 1.2
UPF3A-202ENST00000375299 GRK7Q8WTQ7 553 aa22.57■■□□□ 1.2
UPF3A-202ENST00000375299 TRAIPQ9BWF2 469 aa22.57■■□□□ 1.2
UPF3A-202ENST00000375299 ETNK1Q9HBU6 452 aa22.57■■□□□ 1.2
UPF3A-202ENST00000375299 ACP6Q9NPH0 428 aa22.57■■□□□ 1.2
UPF3A-202ENST00000375299 TBK1Q9UHD2 729 aa22.57■■□□□ 1.2
UPF3A-202ENST00000375299 CDH16O75309 829 aa22.56■■□□□ 1.2
UPF3A-202ENST00000375299 POTEJP0CG39 1038 aa22.56■■□□□ 1.2
UPF3A-202ENST00000375299 ATF2P15336 505 aa22.56■■□□□ 1.2
UPF3A-202ENST00000375299 IRX1P78414 480 aaPredicted RBP22.56■■□□□ 1.2
UPF3A-202ENST00000375299 GRIK3Q13003 919 aa22.56■■□□□ 1.2
UPF3A-202ENST00000375299 SRRM1Q8IYB3 904 aaKnown RBP22.56■■□□□ 1.2
UPF3A-202ENST00000375299 GMCL1Q96IK5 515 aa22.56■■□□□ 1.2
UPF3A-202ENST00000375299 NAALADL1Q9UQQ1 740 aa22.56■■□□□ 1.2
UPF3A-202ENST00000375299 ACTL7BQ9Y614 415 aa22.56■■□□□ 1.2
UPF3A-202ENST00000375299 TISP43B9A030 160 aa22.56■■□□□ 1.2
UPF3A-202ENST00000375299 SORBS3O60504 671 aa22.56■■□□□ 1.2
UPF3A-202ENST00000375299 GAS7O60861 476 aa22.56■■□□□ 1.2
UPF3A-202ENST00000375299 NDUFB10O96000 172 aa22.56■■□□□ 1.2
UPF3A-202ENST00000375299 CDC25CP30307 473 aa22.56■■□□□ 1.2
UPF3A-202ENST00000375299 TNIP1Q15025 636 aa22.56■■□□□ 1.2
UPF3A-202ENST00000375299 DAW1Q8N136 415 aa22.56■■□□□ 1.2
UPF3A-202ENST00000375299 GMCL1P1Q8NEA9 526 aa22.56■■□□□ 1.2
UPF3A-202ENST00000375299 MAIP1Q8WWC4 291 aa22.56■■□□□ 1.2
UPF3A-202ENST00000375299 ATG4AQ8WYN0 398 aa22.56■■□□□ 1.2
UPF3A-202ENST00000375299 TEKT1Q969V4 418 aa22.56■■□□□ 1.2
UPF3A-202ENST00000375299 KREMEN1Q96MU8 473 aa22.56■■□□□ 1.2
UPF3A-202ENST00000375299 ANKRD27Q96NW4 1050 aa22.56■■□□□ 1.2
UPF3A-202ENST00000375299 PITPNM3Q9BZ71 974 aa22.56■■□□□ 1.2
UPF3A-202ENST00000375299 ANAPC5Q9UJX4 755 aa22.56■■□□□ 1.2
UPF3A-202ENST00000375299 GAS8O95995 478 aa22.55■■□□□ 1.2
UPF3A-202ENST00000375299 FOXN2P32314 431 aa22.55■■□□□ 1.2
UPF3A-202ENST00000375299 MXI1P50539 228 aa22.55■■□□□ 1.2
UPF3A-202ENST00000375299 TRIP13Q15645 432 aaPredicted RBP22.55■■□□□ 1.2
UPF3A-202ENST00000375299 CDCA2Q69YH5 1023 aaPredicted RBP22.55■■□□□ 1.2
UPF3A-202ENST00000375299 CAPRIN2Q6IMN6 1127 aaKnown RBP22.55■■□□□ 1.2
UPF3A-202ENST00000375299 SEPT14Q6ZU15 432 aa22.55■■□□□ 1.2
UPF3A-202ENST00000375299 UTP4Q969X6 686 aaKnown RBP22.55■■□□□ 1.2
UPF3A-202ENST00000375299 TMEM206Q9H813 350 aa22.55■■□□□ 1.2
UPF3A-202ENST00000375299 ARHGEF35A5YM69 484 aa22.55■■□□□ 1.2
UPF3A-202ENST00000375299 LUC7L3O95232 432 aaKnown RBP22.55■■□□□ 1.2
UPF3A-202ENST00000375299 GCKP35557 465 aa22.55■■□□□ 1.2
UPF3A-202ENST00000375299 CCNHP51946 323 aaPredicted RBP22.55■■□□□ 1.2
UPF3A-202ENST00000375299 BLMHQ13867 455 aa22.55■■□□□ 1.2
UPF3A-202ENST00000375299 NAIF1Q69YI7 327 aaPredicted RBP22.55■■□□□ 1.2
UPF3A-202ENST00000375299 MICAL1Q8TDZ2 1067 aa22.55■■□□□ 1.2
UPF3A-202ENST00000375299 USP20Q9Y2K6 914 aa22.55■■□□□ 1.2
UPF3A-202ENST00000375299 SMCHD1A6NHR9 2005 aa22.55■■□□□ 1.2
UPF3A-202ENST00000375299 ONECUT3O60422 494 aaPredicted RBP22.54■■□□□ 1.2
UPF3A-202ENST00000375299 IL9RQ01113 521 aa22.54■■□□□ 1.2
UPF3A-202ENST00000375299 PARP6Q2NL67 630 aa22.54■■□□□ 1.2
UPF3A-202ENST00000375299 MIS18BP1Q6P0N0 1132 aa22.54■■□□□ 1.2
UPF3A-202ENST00000375299 C12orf56Q8IXR9 622 aa22.54■■□□□ 1.2
UPF3A-202ENST00000375299 SEPT12Q8IYM1 358 aa22.54■■□□□ 1.2
UPF3A-202ENST00000375299 PPM1KQ8N3J5 372 aa22.54■■□□□ 1.2
UPF3A-202ENST00000375299 PLEKHO2Q8TD55 490 aa22.54■■□□□ 1.2
UPF3A-202ENST00000375299 PWWP2AQ96N64 755 aa22.54■■□□□ 1.2
UPF3A-202ENST00000375299 CBWD1Q9BRT8 395 aa22.54■■□□□ 1.2
UPF3A-202ENST00000375299 DCLK3Q9C098 648 aa22.54■■□□□ 1.2
UPF3A-202ENST00000375299 TMEM117Q9H0C3 514 aa22.54■■□□□ 1.2
UPF3A-202ENST00000375299 MYLK2Q9H1R3 596 aa22.54■■□□□ 1.2
UPF3A-202ENST00000375299 CORO1CQ9ULV4 474 aaPredicted RBP22.54■■□□□ 1.2
UPF3A-202ENST00000375299 MYCNP04198 464 aaPredicted RBP22.54■■□□□ 1.2
UPF3A-202ENST00000375299 ADCY1Q08828 1119 aa22.54■■□□□ 1.2
UPF3A-202ENST00000375299 TAF11Q15544 211 aa22.54■■□□□ 1.2
UPF3A-202ENST00000375299 SLC27A3Q5K4L6 730 aa22.54■■□□□ 1.2
UPF3A-202ENST00000375299 TMEM174Q8WUU8 243 aa22.54■■□□□ 1.2
UPF3A-202ENST00000375299 SHC3Q92529 594 aa22.54■■□□□ 1.2
UPF3A-202ENST00000375299 LRMDAQ9H2I8 198 aa22.54■■□□□ 1.2
UPF3A-202ENST00000375299 UNC45AQ9H3U1 944 aa22.54■■□□□ 1.2
UPF3A-202ENST00000375299 ARHGEF10LQ9HCE6 1279 aa22.54■■□□□ 1.2
UPF3A-202ENST00000375299 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.54■■□□□ 1.25e-6■■■■■ 31.1
UPF3A-202ENST00000375299 EURLQ9NYK6 297 aa22.54■■□□□ 1.2
UPF3A-202ENST00000375299 ATP5HO75947 161 aa22.53■■□□□ 1.2
UPF3A-202ENST00000375299 CYP11B1P15538 503 aa22.53■■□□□ 1.2
UPF3A-202ENST00000375299 ADCY8P40145 1251 aa22.53■■□□□ 1.2
UPF3A-202ENST00000375299 POLGP54098 1239 aaPredicted RBP22.53■■□□□ 1.2
UPF3A-202ENST00000375299 MFAP3P55082 362 aa22.53■■□□□ 1.2
UPF3A-202ENST00000375299 CDR2Q01850 454 aa22.53■■□□□ 1.2
UPF3A-202ENST00000375299 STAT4Q14765 748 aa22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms