RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 PACSIN2Q9UNF0 486 aaPredicted RBP16.79■□□□□ 0.28
CCDC40-202ENST00000374876 IGKV6D-21A0A0A0MT36 114 aa16.78■□□□□ 0.28
CCDC40-202ENST00000374876 CCDC66A2RUB6 948 aa16.78■□□□□ 0.28
CCDC40-202ENST00000374876 PPP1R37O75864 691 aa16.78■□□□□ 0.28
CCDC40-202ENST00000374876 PSAPP07602 524 aa16.78■□□□□ 0.28
CCDC40-202ENST00000374876 TRIM49P0CI25 452 aa16.78■□□□□ 0.28
CCDC40-202ENST00000374876 TRIM49CP0CI26 452 aa16.78■□□□□ 0.28
CCDC40-202ENST00000374876 QARSP47897 775 aaKnown RBP16.78■□□□□ 0.28
CCDC40-202ENST00000374876 ALCAMQ13740 583 aa16.78■□□□□ 0.28
CCDC40-202ENST00000374876 SLC9A9Q8IVB4 645 aa16.78■□□□□ 0.28
CCDC40-202ENST00000374876 C7orf61Q8IZ16 206 aa16.78■□□□□ 0.28
CCDC40-202ENST00000374876 C7orf31Q8N865 590 aa16.78■□□□□ 0.28
CCDC40-202ENST00000374876 AENQ8WTP8 325 aaKnown RBP16.78■□□□□ 0.28
CCDC40-202ENST00000374876 STK33Q9BYT3 514 aa16.78■□□□□ 0.28
CCDC40-202ENST00000374876 TRPV6Q9H1D0 765 aa16.78■□□□□ 0.28
CCDC40-202ENST00000374876 DBR1Q9UK59 544 aaKnown RBP16.78■□□□□ 0.28
CCDC40-202ENST00000374876 F8VZ95 297 aa16.77■□□□□ 0.28
CCDC40-202ENST00000374876 TNRC18O15417 2968 aaPredicted RBP16.77■□□□□ 0.28
CCDC40-202ENST00000374876 PHACTR2O75167 634 aa16.77■□□□□ 0.28
CCDC40-202ENST00000374876 H2AFZP0C0S5 128 aa16.77■□□□□ 0.28
CCDC40-202ENST00000374876 SOX5P35711 763 aa16.77■□□□□ 0.28
CCDC40-202ENST00000374876 MRPS25P82663 173 aaKnown RBP16.77■□□□□ 0.28
CCDC40-202ENST00000374876 ZNF200P98182 395 aaPredicted RBP16.77■□□□□ 0.28
CCDC40-202ENST00000374876 MYL7Q01449 175 aa16.77■□□□□ 0.28
CCDC40-202ENST00000374876 MYBPC2Q14324 1141 aa16.77■□□□□ 0.28
CCDC40-202ENST00000374876 HIC1Q14526 733 aa16.77■□□□□ 0.28
CCDC40-202ENST00000374876 RPS6KA1Q15418 735 aa16.77■□□□□ 0.28
CCDC40-202ENST00000374876 CBWD6Q4V339 395 aa16.77■□□□□ 0.28
CCDC40-202ENST00000374876 CBWD3Q5JTY5 395 aa16.77■□□□□ 0.28
CCDC40-202ENST00000374876 CBWD5Q5RIA9 395 aa16.77■□□□□ 0.28
CCDC40-202ENST00000374876 H2AFVQ71UI9 128 aa16.77■□□□□ 0.28
CCDC40-202ENST00000374876 FMNL3Q8IVF7 1028 aa16.77■□□□□ 0.28
CCDC40-202ENST00000374876 TMEM206Q9H813 350 aa16.77■□□□□ 0.28
CCDC40-202ENST00000374876 PSD3Q9NYI0 1048 aa16.77■□□□□ 0.28
CCDC40-202ENST00000374876 ERAP1Q9NZ08 941 aa16.77■□□□□ 0.28
CCDC40-202ENST00000374876 DNAJC12Q9UKB3 198 aa16.77■□□□□ 0.28
CCDC40-202ENST00000374876 ATP8B3O60423 1300 aa16.77■□□□□ 0.28
CCDC40-202ENST00000374876 EMSYQ7Z589 1322 aa16.77■□□□□ 0.28
CCDC40-202ENST00000374876 LOXHD1Q8IVV2 1947 aa16.77■□□□□ 0.27
CCDC40-202ENST00000374876 B4GALT4O60513 344 aa16.77■□□□□ 0.27
CCDC40-202ENST00000374876 MAPTP10636 758 aaKnown RBP16.77■□□□□ 0.27
CCDC40-202ENST00000374876 KRT13P13646 458 aa16.77■□□□□ 0.27
CCDC40-202ENST00000374876 ATP4AP20648 1035 aa16.77■□□□□ 0.27
CCDC40-202ENST00000374876 SFNP31947 248 aa16.77■□□□□ 0.27
CCDC40-202ENST00000374876 RARRES1P49788 294 aa16.77■□□□□ 0.27
CCDC40-202ENST00000374876 JAK3P52333 1124 aa16.77■□□□□ 0.27
CCDC40-202ENST00000374876 FAAP100Q0VG06 881 aa16.77■□□□□ 0.27
CCDC40-202ENST00000374876 BFSP1Q12934 665 aa16.77■□□□□ 0.27
CCDC40-202ENST00000374876 ANKRD33Q7Z3H0 272 aa16.77■□□□□ 0.27
CCDC40-202ENST00000374876 FAM126BQ8IXS8 530 aa16.77■□□□□ 0.27
CCDC40-202ENST00000374876 RDH13Q8NBN7 331 aa16.77■□□□□ 0.27
CCDC40-202ENST00000374876 INTS2Q9H0H0 1204 aaKnown RBP16.77■□□□□ 0.27
CCDC40-202ENST00000374876 SETD4Q9NVD3 440 aa16.77■□□□□ 0.27
CCDC40-202ENST00000374876 NENFQ9UMX5 172 aa16.77■□□□□ 0.27
CCDC40-202ENST00000374876 DCDC2CA8MYV0 355 aa16.76■□□□□ 0.27
CCDC40-202ENST00000374876 DDX3XO00571 662 aaKnown RBP eCLIP16.76■□□□□ 0.27
CCDC40-202ENST00000374876 CCDC172P0C7W6 258 aa16.76■□□□□ 0.27
CCDC40-202ENST00000374876 SMIM10L2AP0DMW4 78 aa16.76■□□□□ 0.27
CCDC40-202ENST00000374876 SMIM10L2BP0DMW5 78 aa16.76■□□□□ 0.27
CCDC40-202ENST00000374876 DRAP1Q14919 205 aaPredicted RBP16.76■□□□□ 0.27
CCDC40-202ENST00000374876 UGCGQ16739 394 aa16.76■□□□□ 0.27
CCDC40-202ENST00000374876 FAM160B1Q5W0V3 765 aa16.76■□□□□ 0.27
CCDC40-202ENST00000374876 GDF6Q6KF10 455 aaPredicted RBP16.76■□□□□ 0.27
CCDC40-202ENST00000374876 PLPPR4Q7Z2D5 763 aa16.76■□□□□ 0.27
CCDC40-202ENST00000374876 LMBR1Q8WVP7 490 aa16.76■□□□□ 0.27
CCDC40-202ENST00000374876 ACCSQ96QU6 501 aa16.76■□□□□ 0.27
CCDC40-202ENST00000374876 APEX2Q9UBZ4 518 aa16.76■□□□□ 0.27
CCDC40-202ENST00000374876 INTUQ9ULD6 942 aa16.76■□□□□ 0.27
CCDC40-202ENST00000374876 CES2O00748 559 aa16.75■□□□□ 0.27
CCDC40-202ENST00000374876 KCNK3O14649 394 aa16.75■□□□□ 0.27
CCDC40-202ENST00000374876 LYPLA2O95372 231 aa16.75■□□□□ 0.27
CCDC40-202ENST00000374876 PLS3P13797 630 aa16.75■□□□□ 0.27
CCDC40-202ENST00000374876 SYN1P17600 705 aa16.75■□□□□ 0.27
CCDC40-202ENST00000374876 YWHABP31946 246 aaKnown RBP16.75■□□□□ 0.27
CCDC40-202ENST00000374876 LMAN1P49257 510 aa16.75■□□□□ 0.27
CCDC40-202ENST00000374876 PLCB4Q15147 1175 aa16.75■□□□□ 0.27
CCDC40-202ENST00000374876 SND1Q7KZF4 910 aaKnown RBP eCLIP16.75■□□□□ 0.27
CCDC40-202ENST00000374876 DNAAF5Q86Y56 855 aa16.75■□□□□ 0.27
CCDC40-202ENST00000374876 AFAP1L1Q8TED9 768 aa16.75■□□□□ 0.27
CCDC40-202ENST00000374876 TOX2Q96NM4 488 aa16.75■□□□□ 0.27
CCDC40-202ENST00000374876 PRDM5Q9NQX1 630 aaPredicted RBP16.75■□□□□ 0.27
CCDC40-202ENST00000374876 GTF2IRD1Q9UHL9 959 aa16.75■□□□□ 0.27
CCDC40-202ENST00000374876 MAFBQ9Y5Q3 323 aaPredicted RBP16.75■□□□□ 0.27
CCDC40-202ENST00000374876 A0A0A6YYK5 440 aaPredicted RBP16.75■□□□□ 0.27
CCDC40-202ENST00000374876 KIF4AO95239 1232 aa16.75■□□□□ 0.27
CCDC40-202ENST00000374876 EPHB4P54760 987 aa16.75■□□□□ 0.27
CCDC40-202ENST00000374876 PTGISQ16647 500 aa16.75■□□□□ 0.27
CCDC40-202ENST00000374876 INTS8Q75QN2 995 aaKnown RBP16.75■□□□□ 0.27
CCDC40-202ENST00000374876 IFT20Q8IY31 132 aa16.75■□□□□ 0.27
CCDC40-202ENST00000374876 LRRC57Q8N9N7 239 aa16.75■□□□□ 0.27
CCDC40-202ENST00000374876 ZMYND8Q9ULU4 1186 aaPredicted RBP16.75■□□□□ 0.27
CCDC40-202ENST00000374876 TRPC6Q9Y210 931 aa16.75■□□□□ 0.27
CCDC40-202ENST00000374876 DAAM1Q9Y4D1 1078 aa16.75■□□□□ 0.27
CCDC40-202ENST00000374876 MROH7Q68CQ1 1323 aa16.75■□□□□ 0.27
CCDC40-202ENST00000374876 MYH11P35749 1972 aa16.74■□□□□ 0.27
CCDC40-202ENST00000374876 GOLGA6BA6NDN3 693 aa16.74■□□□□ 0.27
CCDC40-202ENST00000374876 ZNF862O60290 1169 aa16.74■□□□□ 0.27
CCDC40-202ENST00000374876 RNF40O75150 1001 aa16.74■□□□□ 0.27
CCDC40-202ENST00000374876 SYF2O95926 243 aaKnown RBP16.74■□□□□ 0.27
CCDC40-202ENST00000374876 CD4P01730 458 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms