RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 CEP290O15078 2479 aa15.45■□□□□ 0.06
HMGA1-203ENST00000374116 SSU72P8A0A1W2PR75 194 aa15.45■□□□□ 0.06
HMGA1-203ENST00000374116 ZNF263O14978 683 aa15.45■□□□□ 0.06
HMGA1-203ENST00000374116 AKR1B10O60218 316 aa15.45■□□□□ 0.06
HMGA1-203ENST00000374116 TBCAO75347 108 aaKnown RBP15.45■□□□□ 0.06
HMGA1-203ENST00000374116 CSDE1O75534 798 aaKnown RBP15.45■□□□□ 0.06
HMGA1-203ENST00000374116 PLEKP08567 350 aaPredicted RBP15.45■□□□□ 0.06
HMGA1-203ENST00000374116 MYBP10242 640 aa15.45■□□□□ 0.06
HMGA1-203ENST00000374116 CKBP12277 381 aa15.45■□□□□ 0.06
HMGA1-203ENST00000374116 AARSP49588 968 aaKnown RBP eCLIP15.45■□□□□ 0.06
HMGA1-203ENST00000374116 FRMD5Q7Z6J6 570 aa15.45■□□□□ 0.06
HMGA1-203ENST00000374116 RHPN2Q8IUC4 686 aa15.45■□□□□ 0.06
HMGA1-203ENST00000374116 IFIH1Q9BYX4 1025 aaKnown RBP15.45■□□□□ 0.06
HMGA1-203ENST00000374116 TFR2Q9UP52 801 aa15.45■□□□□ 0.06
HMGA1-203ENST00000374116 FAN1Q9Y2M0 1017 aa15.45■□□□□ 0.06
HMGA1-203ENST00000374116 LAMA2P24043 3122 aaKnown RBP15.44■□□□□ 0.06
HMGA1-203ENST00000374116 IGKV6-21A0A0C4DH24 114 aa15.44■□□□□ 0.06
HMGA1-203ENST00000374116 EIF3DO15371 548 aaKnown RBP eCLIP15.44■□□□□ 0.065e-11■□□□□ 8.1
HMGA1-203ENST00000374116 DGAT1O75907 488 aa15.44■□□□□ 0.06
HMGA1-203ENST00000374116 NR2F2P24468 414 aa15.44■□□□□ 0.06
HMGA1-203ENST00000374116 KIZQ2M2Z5 673 aa15.44■□□□□ 0.06
HMGA1-203ENST00000374116 FAM102BQ5T8I3 360 aa15.44■□□□□ 0.06
HMGA1-203ENST00000374116 FOXR1Q6PIV2 292 aa15.44■□□□□ 0.06
HMGA1-203ENST00000374116 LINC01465Q8N7H1 131 aa15.44■□□□□ 0.06
HMGA1-203ENST00000374116 WNT8AQ9H1J5 351 aa15.44■□□□□ 0.06
HMGA1-203ENST00000374116 ATP6V0A4Q9HBG4 840 aa15.44■□□□□ 0.06
HMGA1-203ENST00000374116 SUCLA2Q9P2R7 463 aaPredicted RBP15.44■□□□□ 0.06
HMGA1-203ENST00000374116 SEL1LQ9UBV2 794 aa15.44■□□□□ 0.06
HMGA1-203ENST00000374116 ODF2LQ9ULJ1 636 aa15.44■□□□□ 0.06
HMGA1-203ENST00000374116 RANBP2P49792 3224 aaKnown RBP15.44■□□□□ 0.06
HMGA1-203ENST00000374116 SMIM35A0A1B0GVV1 85 aa15.43■□□□□ 0.06
HMGA1-203ENST00000374116 MAGEB2O15479 319 aa15.43■□□□□ 0.06
HMGA1-203ENST00000374116 NOL4O94818 638 aa15.43■□□□□ 0.06
HMGA1-203ENST00000374116 PRPF6O94906 941 aaKnown RBP15.43■□□□□ 0.06
HMGA1-203ENST00000374116 CHRNA1P02708 482 aa15.43■□□□□ 0.06
HMGA1-203ENST00000374116 ATP1A1P05023 1023 aaKnown RBP15.43■□□□□ 0.06
HMGA1-203ENST00000374116 RAG1P15918 1043 aa15.43■□□□□ 0.06
HMGA1-203ENST00000374116 NFIL3Q16649 462 aa15.43■□□□□ 0.06
HMGA1-203ENST00000374116 DNAJC21Q5F1R6 531 aaKnown RBP15.43■□□□□ 0.06
HMGA1-203ENST00000374116 SFMBT2Q5VUG0 894 aa15.43■□□□□ 0.06
HMGA1-203ENST00000374116 CCDC155Q8N6L0 562 aa15.43■□□□□ 0.06
HMGA1-203ENST00000374116 TRIM58Q8NG06 486 aa15.43■□□□□ 0.06
HMGA1-203ENST00000374116 PRPF31Q8WWY3 499 aaKnown RBP15.43■□□□□ 0.06
HMGA1-203ENST00000374116 RPGRIP1Q96KN7 1286 aa15.43■□□□□ 0.06
HMGA1-203ENST00000374116 LSM14BQ9BX40 385 aaKnown RBP15.43■□□□□ 0.06
HMGA1-203ENST00000374116 PARVGQ9HBI0 331 aa15.43■□□□□ 0.06
HMGA1-203ENST00000374116 TYW1Q9NV66 732 aaKnown RBP15.43■□□□□ 0.06
HMGA1-203ENST00000374116 SIP14410 1827 aa15.43■□□□□ 0.06
HMGA1-203ENST00000374116 TGFB1I1O43294 461 aa15.43■□□□□ 0.06
HMGA1-203ENST00000374116 TACC1O75410 805 aa15.43■□□□□ 0.06
HMGA1-203ENST00000374116 SERPING1P05155 500 aa15.43■□□□□ 0.06
HMGA1-203ENST00000374116 SRGAP2CP0DJJ0 459 aa15.43■□□□□ 0.06
HMGA1-203ENST00000374116 RPL13P26373 211 aaKnown RBP15.43■□□□□ 0.06
HMGA1-203ENST00000374116 USP8P40818 1118 aa15.43■□□□□ 0.06
HMGA1-203ENST00000374116 NLRP11P59045 1033 aaKnown RBP15.43■□□□□ 0.06
HMGA1-203ENST00000374116 CKAP4Q07065 602 aaKnown RBP15.43■□□□□ 0.06
HMGA1-203ENST00000374116 ASTE1Q2TB18 679 aaPredicted RBP15.43■□□□□ 0.06
HMGA1-203ENST00000374116 HSP90B2PQ58FF3 399 aa15.43■□□□□ 0.06
HMGA1-203ENST00000374116 TAF2Q6P1X5 1199 aa15.43■□□□□ 0.06
HMGA1-203ENST00000374116 ASAP3Q8TDY4 903 aa15.43■□□□□ 0.06
HMGA1-203ENST00000374116 BSNDQ8WZ55 320 aa15.43■□□□□ 0.06
HMGA1-203ENST00000374116 NLRP4Q96MN2 994 aa15.43■□□□□ 0.06
HMGA1-203ENST00000374116 STRA6Q9BX79 667 aa15.43■□□□□ 0.06
HMGA1-203ENST00000374116 SEZ6LQ9BYH1 1024 aa15.43■□□□□ 0.06
HMGA1-203ENST00000374116 POLR3FQ9H1D9 316 aaPredicted RBP15.43■□□□□ 0.06
HMGA1-203ENST00000374116 CXorf56Q9H5V9 222 aa15.43■□□□□ 0.06
HMGA1-203ENST00000374116 PRKAG2Q9UGJ0 569 aa15.43■□□□□ 0.06
HMGA1-203ENST00000374116 CDY2AQ9Y6F7 541 aa15.43■□□□□ 0.06
HMGA1-203ENST00000374116 ENC1O14682 589 aa15.42■□□□□ 0.06
HMGA1-203ENST00000374116 PJA2O43164 708 aa15.42■□□□□ 0.06
HMGA1-203ENST00000374116 FAM13AO94988 1023 aa15.42■□□□□ 0.06
HMGA1-203ENST00000374116 TMOD1P28289 359 aa15.42■□□□□ 0.06
HMGA1-203ENST00000374116 RFC5P40937 340 aa15.42■□□□□ 0.06
HMGA1-203ENST00000374116 KCNH2Q12809 1159 aa15.42■□□□□ 0.06
HMGA1-203ENST00000374116 MAPK7Q13164 816 aa15.42■□□□□ 0.06
HMGA1-203ENST00000374116 MBTPS1Q14703 1052 aa15.42■□□□□ 0.06
HMGA1-203ENST00000374116 HGSNATQ68CP4 663 aa15.42■□□□□ 0.06
HMGA1-203ENST00000374116 TRAF7Q6Q0C0 670 aa15.42■□□□□ 0.06
HMGA1-203ENST00000374116 ZNF720Q7Z2F6 126 aa15.42■□□□□ 0.06
HMGA1-203ENST00000374116 DEFB128Q7Z7B8 93 aa15.42■□□□□ 0.06
HMGA1-203ENST00000374116 DAW1Q8N136 415 aa15.42■□□□□ 0.06
HMGA1-203ENST00000374116 TMEM40Q8WWA1 233 aa15.42■□□□□ 0.06
HMGA1-203ENST00000374116 BADQ92934 168 aa15.42■□□□□ 0.06
HMGA1-203ENST00000374116 OSMRQ99650 979 aa15.42■□□□□ 0.06
HMGA1-203ENST00000374116 METTL14Q9HCE5 456 aaKnown RBP15.42■□□□□ 0.06
HMGA1-203ENST00000374116 ARMCX3Q9UH62 379 aaPredicted RBP15.42■□□□□ 0.06
HMGA1-203ENST00000374116 DUSP10Q9Y6W6 482 aa15.42■□□□□ 0.06
HMGA1-203ENST00000374116 ZMYM2Q9UBW7 1377 aa15.42■□□□□ 0.06
HMGA1-203ENST00000374116 TET1Q8NFU7 2136 aa15.42■□□□□ 0.06
HMGA1-203ENST00000374116 PDE4DIPQ5VU43 2346 aa15.42■□□□□ 0.06
HMGA1-203ENST00000374116 UBE4BO95155 1302 aa15.42■□□□□ 0.06
HMGA1-203ENST00000374116 ATXN2Q99700 1313 aaKnown RBP15.42■□□□□ 0.06
HMGA1-203ENST00000374116 MACROD2A1Z1Q3 448 aa15.41■□□□□ 0.06
HMGA1-203ENST00000374116 SLC16A3O15427 465 aaKnown RBP15.41■□□□□ 0.06
HMGA1-203ENST00000374116 SHOX2O60902 331 aaPredicted RBP15.41■□□□□ 0.06
HMGA1-203ENST00000374116 HIP1RO75146 1068 aa15.41■□□□□ 0.06
HMGA1-203ENST00000374116 GCNT3O95395 438 aa15.41■□□□□ 0.06
HMGA1-203ENST00000374116 CSF2RAP15509 400 aa15.41■□□□□ 0.06
HMGA1-203ENST00000374116 FGFR4P22455 802 aa15.41■□□□□ 0.06
HMGA1-203ENST00000374116 MAGEA1P43355 309 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms