RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 SHC3Q92529 594 aa17.51■□□□□ 0.39
SDC4-201ENST00000372733 DHX38Q92620 1227 aaKnown RBP17.51■□□□□ 0.39
SDC4-201ENST00000372733 SLCO2A1Q92959 643 aa17.51■□□□□ 0.39
SDC4-201ENST00000372733 VTI1AQ96AJ9 217 aa17.51■□□□□ 0.39
SDC4-201ENST00000372733 TEKT3Q9BXF9 490 aa17.51■□□□□ 0.39
SDC4-201ENST00000372733 WDR11Q9BZH6 1224 aa17.51■□□□□ 0.39
SDC4-201ENST00000372733 NOP53Q9NZM5 478 aaKnown RBP17.51■□□□□ 0.39
SDC4-201ENST00000372733 DIAPH2O60879 1101 aa17.51■□□□□ 0.39
SDC4-201ENST00000372733 ATP5DP30049 168 aa17.51■□□□□ 0.39
SDC4-201ENST00000372733 STX2P32856 288 aa17.51■□□□□ 0.39
SDC4-201ENST00000372733 ECE1P42892 770 aa17.51■□□□□ 0.39
SDC4-201ENST00000372733 ERICH1Q86X53 443 aa17.51■□□□□ 0.39
SDC4-201ENST00000372733 SRRM1Q8IYB3 904 aaKnown RBP17.51■□□□□ 0.39
SDC4-201ENST00000372733 GBP7Q8N8V2 638 aaPredicted RBP17.51■□□□□ 0.39
SDC4-201ENST00000372733 ANKLE1Q8NAG6 615 aa17.51■□□□□ 0.39
SDC4-201ENST00000372733 ZNF570Q96NI8 536 aa17.51■□□□□ 0.39
SDC4-201ENST00000372733 FAM118BQ9BPY3 351 aa17.51■□□□□ 0.39
SDC4-201ENST00000372733 UVRAGQ9P2Y5 699 aa17.51■□□□□ 0.39
SDC4-201ENST00000372733 O00370 1275 aa17.5■□□□□ 0.39
SDC4-201ENST00000372733 STAT2P52630 851 aa17.5■□□□□ 0.39
SDC4-201ENST00000372733 PHLDB2Q86SQ0 1253 aa17.5■□□□□ 0.39
SDC4-201ENST00000372733 ACCSQ96QU6 501 aa17.5■□□□□ 0.39
SDC4-201ENST00000372733 RXFP1Q9HBX9 757 aa17.5■□□□□ 0.39
SDC4-201ENST00000372733 LARSQ9P2J5 1176 aaKnown RBP17.5■□□□□ 0.39
SDC4-201ENST00000372733 PRKAG3Q9UGI9 489 aa17.5■□□□□ 0.39
SDC4-201ENST00000372733 ANAPC7Q9UJX3 599 aa17.5■□□□□ 0.39
SDC4-201ENST00000372733 R3HDM2Q9Y2K5 976 aaKnown RBP17.5■□□□□ 0.39
SDC4-201ENST00000372733 IPO5O00410 1097 aaKnown RBP17.5■□□□□ 0.39
SDC4-201ENST00000372733 POLRMTO00411 1230 aaKnown RBP17.5■□□□□ 0.39
SDC4-201ENST00000372733 ATF2P15336 505 aa17.5■□□□□ 0.39
SDC4-201ENST00000372733 ITIH2P19823 946 aa17.5■□□□□ 0.39
SDC4-201ENST00000372733 CDC25CP30307 473 aa17.5■□□□□ 0.39
SDC4-201ENST00000372733 PTK6Q13882 451 aa17.5■□□□□ 0.39
SDC4-201ENST00000372733 DAB2IPQ5VWQ8 1189 aa17.5■□□□□ 0.39
SDC4-201ENST00000372733 PRUNE1Q86TP1 453 aa17.5■□□□□ 0.39
SDC4-201ENST00000372733 CBWD2Q8IUF1 395 aa17.5■□□□□ 0.39
SDC4-201ENST00000372733 CCDC127Q96BQ5 260 aa17.5■□□□□ 0.39
SDC4-201ENST00000372733 TMEM206Q9H813 350 aa17.5■□□□□ 0.39
SDC4-201ENST00000372733 ARHGEF3Q9NR81 526 aa17.5■□□□□ 0.39
SDC4-201ENST00000372733 NRXN2Q9P2S2 1712 aa17.49■□□□□ 0.39
SDC4-201ENST00000372733 MUTP22033 750 aa17.49■□□□□ 0.39
SDC4-201ENST00000372733 MSH2P43246 934 aa17.49■□□□□ 0.39
SDC4-201ENST00000372733 CDR2Q01850 454 aa17.49■□□□□ 0.39
SDC4-201ENST00000372733 B3GNT9Q6UX72 402 aa17.49■□□□□ 0.39
SDC4-201ENST00000372733 FAM47EQ6ZV65 393 aa17.49■□□□□ 0.39
SDC4-201ENST00000372733 TRMT1LQ7Z2T5 733 aaKnown RBP17.49■□□□□ 0.39
SDC4-201ENST00000372733 C7orf43Q8WVR3 580 aa17.49■□□□□ 0.39
SDC4-201ENST00000372733 FAXDC2Q96IV6 333 aa17.49■□□□□ 0.39
SDC4-201ENST00000372733 IDI2Q9BXS1 227 aa17.49■□□□□ 0.39
SDC4-201ENST00000372733 TOPORSQ9NS56 1045 aaPredicted RBP17.49■□□□□ 0.39
SDC4-201ENST00000372733 ZNFX1Q9P2E3 1918 aaKnown RBP17.49■□□□□ 0.39
SDC4-201ENST00000372733 TMEM150BA6NC51 233 aa17.49■□□□□ 0.39
SDC4-201ENST00000372733 SLC8A3P57103 927 aa17.49■□□□□ 0.39
SDC4-201ENST00000372733 LLGL2Q6P1M3 1020 aa17.49■□□□□ 0.39
SDC4-201ENST00000372733 ASRGL1Q7L266 308 aa17.49■□□□□ 0.39
SDC4-201ENST00000372733 SAAL1Q96ER3 474 aa17.49■□□□□ 0.39
SDC4-201ENST00000372733 IFT74Q96LB3 600 aa17.49■□□□□ 0.39
SDC4-201ENST00000372733 ANAPC5Q9UJX4 755 aa17.49■□□□□ 0.39
SDC4-201ENST00000372733 SKAP2O75563 359 aaPredicted RBP17.48■□□□□ 0.39
SDC4-201ENST00000372733 ADCY8P40145 1251 aa17.48■□□□□ 0.39
SDC4-201ENST00000372733 MFAP3P55082 362 aa17.48■□□□□ 0.39
SDC4-201ENST00000372733 RBM26Q5T8P6 1007 aaKnown RBP17.48■□□□□ 0.39
SDC4-201ENST00000372733 ECHDC2Q86YB7 292 aa17.48■□□□□ 0.39
SDC4-201ENST00000372733 MAB21L3Q8N8X9 362 aa17.48■□□□□ 0.39
SDC4-201ENST00000372733 C9orf72Q96LT7 481 aa17.48■□□□□ 0.39
SDC4-201ENST00000372733 DCLK3Q9C098 648 aa17.48■□□□□ 0.39
SDC4-201ENST00000372733 GPRC5CQ9NQ84 441 aa17.48■□□□□ 0.39
SDC4-201ENST00000372733 KLRG2A4D1S0 409 aaPredicted RBP17.48■□□□□ 0.39
SDC4-201ENST00000372733 VIL1P09327 827 aaKnown RBP17.48■□□□□ 0.39
SDC4-201ENST00000372733 MAPK4P31152 587 aa17.48■□□□□ 0.39
SDC4-201ENST00000372733 FOXN2P32314 431 aa17.48■□□□□ 0.39
SDC4-201ENST00000372733 TEX2Q8IWB9 1127 aa17.48■□□□□ 0.39
SDC4-201ENST00000372733 C12orf56Q8IXR9 622 aa17.48■□□□□ 0.39
SDC4-201ENST00000372733 HELQQ8TDG4 1101 aa17.48■□□□□ 0.39
SDC4-201ENST00000372733 ACER1Q8TDN7 264 aa17.48■□□□□ 0.39
SDC4-201ENST00000372733 FAM84AQ96KN4 292 aa17.48■□□□□ 0.39
SDC4-201ENST00000372733 PLVAPQ9BX97 442 aa17.48■□□□□ 0.39
SDC4-201ENST00000372733 NKIRAS1Q9NYS0 192 aa17.48■□□□□ 0.39
SDC4-201ENST00000372733 ADAM22Q9P0K1 906 aa17.48■□□□□ 0.39
SDC4-201ENST00000372733 ZBTB21Q9ULJ3 1066 aa17.48■□□□□ 0.39
SDC4-201ENST00000372733 NAALADL1Q9UQQ1 740 aa17.48■□□□□ 0.39
SDC4-201ENST00000372733 ADGRA3Q8IWK6 1321 aa17.48■□□□□ 0.39
SDC4-201ENST00000372733 SLC16A4O15374 487 aa17.47■□□□□ 0.39
SDC4-201ENST00000372733 GAS8O95995 478 aa17.47■□□□□ 0.39
SDC4-201ENST00000372733 RRM1P23921 792 aa17.47■□□□□ 0.39
SDC4-201ENST00000372733 CCND1P24385 295 aa17.47■□□□□ 0.39
SDC4-201ENST00000372733 GRIPAP1Q4V328 841 aa17.47■□□□□ 0.39
SDC4-201ENST00000372733 C2CD6Q53TS8 623 aa17.47■□□□□ 0.39
SDC4-201ENST00000372733 TMEM63BQ5T3F8 832 aa17.47■□□□□ 0.39
SDC4-201ENST00000372733 MIER3Q7Z3K6 550 aa17.47■□□□□ 0.39
SDC4-201ENST00000372733 HAUS6Q7Z4H7 955 aa17.47■□□□□ 0.39
SDC4-201ENST00000372733 DDX1Q92499 740 aaKnown RBP17.47■□□□□ 0.39
SDC4-201ENST00000372733 HEMGNQ9BXL5 484 aa17.47■□□□□ 0.39
SDC4-201ENST00000372733 KLHL14Q9P2G3 628 aa17.47■□□□□ 0.39
SDC4-201ENST00000372733 PLS3P13797 630 aa17.47■□□□□ 0.39
SDC4-201ENST00000372733 TAC1P20366 129 aa17.47■□□□□ 0.39
SDC4-201ENST00000372733 TMED2Q15363 201 aa17.47■□□□□ 0.39
SDC4-201ENST00000372733 ACAD10Q6JQN1 1059 aa17.47■□□□□ 0.39
SDC4-201ENST00000372733 BZW1Q7L1Q6 419 aaKnown RBP17.47■□□□□ 0.39
SDC4-201ENST00000372733 TAS1R2Q8TE23 839 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms