RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 SNX1Q13596 522 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 THOC7Q6I9Y2 204 aaKnown RBP9.13□□□□□ -0.95
SYNE1-206ENST00000367253 DEFB128Q7Z7B8 93 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 ASAP3Q8TDY4 903 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 MCRS1Q96EZ8 462 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 ZFYVE19Q96K21 471 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 TNIP3Q96KP6 325 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 ZNF302Q9NR11 478 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 DDX56Q9NY93 547 aaKnown RBP9.13□□□□□ -0.95
SYNE1-206ENST00000367253 SELENONQ9NZV5 590 aa9.13□□□□□ -0.95
SYNE1-206ENST00000367253 PA2G4Q9UQ80 394 aaKnown RBP9.13□□□□□ -0.95
SYNE1-206ENST00000367253 GNGT2O14610 69 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 SGSM2O43147 1006 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 PDE8BO95263 885 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 HSMCR30P0CW71 290 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 GNSP15586 552 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 DDIT3P35638 169 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 TIMM10P62072 90 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 PTK2Q05397 1052 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 TMED2Q15363 201 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 PPM1LQ5SGD2 360 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 PRR23CQ6ZRP0 262 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 FAM186BQ8IYM0 893 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 PNMA5Q96PV4 448 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 XPNPEP3Q9NQH7 507 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 STAP1Q9ULZ2 295 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 SYNJ2BP-COX16A0A087WUM0 186 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 A0A1B0GW55 424 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 GSTA1P08263 222 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 GSTA2P09210 222 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 DUX4L2P0CJ85 424 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 DUX4L3P0CJ86 424 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 DUX4L4P0CJ87 422 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 DUX4L5P0CJ88 424 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 DUX4L6P0CJ89 424 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 DUX4L7P0CJ90 424 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 S100A1P23297 94 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 THPOP40225 353 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 KLHL30Q0D2K2 578 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 TMEM164Q5U3C3 297 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 ANKS6Q68DC2 871 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 CYB5D1Q6P9G0 228 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 TCAIMQ8N3R3 496 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 OLFM3Q96PB7 478 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 OLA1Q9NTK5 396 aaKnown RBP9.12□□□□□ -0.95
SYNE1-206ENST00000367253 COX16Q9P0S2 106 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 DUX4Q9UBX2 424 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 NFE2L3Q9Y4A8 694 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 FGBP02675 491 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 IL4RP24394 825 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 SERPINB3P29508 390 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 GRK4P32298 578 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 SOX5P35711 763 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 SLC20A2Q08357 652 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 NEK9Q8TD19 979 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 VPS39Q96JC1 886 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 ZNF229Q9UJW7 825 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 AMFRQ9UKV5 643 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 PLA2G4CQ9UP65 541 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 NCK2O43639 380 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 ESRRBO95718 433 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 APOA1P02647 267 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 PYGMP11217 842 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 CYP2C9P11712 490 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 MSR1P21757 451 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 PMLP29590 882 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 GARSP41250 739 aaKnown RBP9.12□□□□□ -0.95
SYNE1-206ENST00000367253 PAK1Q13153 545 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 GRAMD1BQ3KR37 738 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 ZCCHC8Q6NZY4 707 aaKnown RBP9.12□□□□□ -0.95
SYNE1-206ENST00000367253 ZC3H18Q86VM9 953 aaKnown RBP9.12□□□□□ -0.95
SYNE1-206ENST00000367253 HEATR4Q86WZ0 1026 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 EFCAB3Q8N7B9 438 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 DDHD1Q8NEL9 900 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 GRK7Q8WTQ7 553 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 FAM151AQ8WW52 585 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 DHX38Q92620 1227 aaKnown RBP9.12□□□□□ -0.95
SYNE1-206ENST00000367253 KLHL25Q9H0H3 589 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 CD209Q9NNX6 404 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 SPATA7Q9P0W8 599 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 PIN4Q9Y237 131 aaKnown RBP9.12□□□□□ -0.95
SYNE1-206ENST00000367253 SPATA31A1Q5TZJ5 1347 aa9.12□□□□□ -0.95
SYNE1-206ENST00000367253 C3P01024 1663 aa9.11□□□□□ -0.95
SYNE1-206ENST00000367253 UBR1Q8IWV7 1749 aa9.11□□□□□ -0.95
SYNE1-206ENST00000367253 IQANK1A0A1B0GTG1 560 aa9.11□□□□□ -0.95
SYNE1-206ENST00000367253 KRIT1O00522 736 aa9.11□□□□□ -0.95
SYNE1-206ENST00000367253 GJB1P08034 283 aa9.11□□□□□ -0.95
SYNE1-206ENST00000367253 PCSK1P29120 753 aa9.11□□□□□ -0.95
SYNE1-206ENST00000367253 PDE1AP54750 535 aa9.11□□□□□ -0.95
SYNE1-206ENST00000367253 OXCT1P55809 520 aa9.11□□□□□ -0.95
SYNE1-206ENST00000367253 KCNQ4P56696 695 aa9.11□□□□□ -0.95
SYNE1-206ENST00000367253 NLRP12P59046 1061 aa9.11□□□□□ -0.95
SYNE1-206ENST00000367253 KCTD16Q68DU8 428 aa9.11□□□□□ -0.95
SYNE1-206ENST00000367253 SPATA18Q8TC71 538 aa9.11□□□□□ -0.95
SYNE1-206ENST00000367253 PHACTR1Q9C0D0 580 aa9.11□□□□□ -0.95
SYNE1-206ENST00000367253 SAE1Q9UBE0 346 aaPredicted RBP9.11□□□□□ -0.95
SYNE1-206ENST00000367253 CPA4Q9UI42 421 aa9.11□□□□□ -0.95
SYNE1-206ENST00000367253 FBXO10Q9UK96 956 aa9.11□□□□□ -0.95
SYNE1-206ENST00000367253 ALPPL2P10696 532 aa9.11□□□□□ -0.95
SYNE1-206ENST00000367253 MCF2P10911 925 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms