RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 ANKRD20A2Q5SQ80 823 aa23.92■■□□□ 1.42
TRIM28-202ENST00000341753 ANKRD20A1Q5TYW2 823 aa23.92■■□□□ 1.42
TRIM28-202ENST00000341753 ANKRD20A3Q5VUR7 823 aa23.92■■□□□ 1.42
TRIM28-202ENST00000341753 TATDN1Q6P1N9 297 aa23.92■■□□□ 1.42
TRIM28-202ENST00000341753 ASRGL1Q7L266 308 aa23.92■■□□□ 1.42
TRIM28-202ENST00000341753 IFT74Q96LB3 600 aa23.92■■□□□ 1.42
TRIM28-202ENST00000341753 SERPINB12Q96P63 405 aa23.92■■□□□ 1.42
TRIM28-202ENST00000341753 CSRNP1Q96S65 589 aa23.92■■□□□ 1.42
TRIM28-202ENST00000341753 WDR18Q9BV38 432 aa23.92■■□□□ 1.42
TRIM28-202ENST00000341753 YDJCA8MPS7 323 aa23.92■■□□□ 1.42
TRIM28-202ENST00000341753 CLGNO14967 610 aa23.92■■□□□ 1.42
TRIM28-202ENST00000341753 THAP12O43422 761 aa23.92■■□□□ 1.42
TRIM28-202ENST00000341753 GGPS1O95749 300 aa23.92■■□□□ 1.42
TRIM28-202ENST00000341753 ITGA8P53708 1063 aa23.92■■□□□ 1.42
TRIM28-202ENST00000341753 LACTBP83111 547 aaPredicted RBP23.92■■□□□ 1.42
TRIM28-202ENST00000341753 ZNF653Q96CK0 615 aa23.92■■□□□ 1.42
TRIM28-202ENST00000341753 PRKAG3Q9UGI9 489 aa23.92■■□□□ 1.42
TRIM28-202ENST00000341753 SCAF8Q9UPN6 1271 aaKnown RBP23.92■■□□□ 1.42
TRIM28-202ENST00000341753 ATP2A2P16615 1042 aaKnown RBP23.91■■□□□ 1.42
TRIM28-202ENST00000341753 CDAN1Q8IWY9 1227 aa23.91■■□□□ 1.42
TRIM28-202ENST00000341753 GBP7Q8N8V2 638 aaPredicted RBP23.91■■□□□ 1.42
TRIM28-202ENST00000341753 TMEM237Q96Q45 408 aa23.91■■□□□ 1.42
TRIM28-202ENST00000341753 ATP11AP98196 1134 aa23.91■■□□□ 1.42
TRIM28-202ENST00000341753 ZYXQ15942 572 aaKnown RBP23.91■■□□□ 1.42
TRIM28-202ENST00000341753 TMEM179Q6ZVK1 233 aa23.91■■□□□ 1.42
TRIM28-202ENST00000341753 EPS8L1Q8TE68 723 aa23.91■■□□□ 1.42
TRIM28-202ENST00000341753 UTP4Q969X6 686 aaKnown RBP23.91■■□□□ 1.42
TRIM28-202ENST00000341753 HERPUD2Q9BSE4 406 aa23.91■■□□□ 1.42
TRIM28-202ENST00000341753 KLHL14Q9P2G3 628 aa23.91■■□□□ 1.42
TRIM28-202ENST00000341753 NKX1-2Q9UD57 310 aaPredicted RBP23.91■■□□□ 1.42
TRIM28-202ENST00000341753 FOXN2P32314 431 aa23.9■■□□□ 1.42
TRIM28-202ENST00000341753 RWDD2BP57060 319 aa23.9■■□□□ 1.42
TRIM28-202ENST00000341753 SYDE2Q5VT97 1194 aa23.9■■□□□ 1.42
TRIM28-202ENST00000341753 TRIM68Q6AZZ1 485 aa23.9■■□□□ 1.42
TRIM28-202ENST00000341753 ACER1Q8TDN7 264 aa23.9■■□□□ 1.42
TRIM28-202ENST00000341753 TTC4O95801 387 aa23.9■■□□□ 1.42
TRIM28-202ENST00000341753 DAB2IPQ5VWQ8 1189 aa23.9■■□□□ 1.42
TRIM28-202ENST00000341753 OTOP1Q7RTM1 612 aa23.9■■□□□ 1.42
TRIM28-202ENST00000341753 SPOCK2Q92563 424 aa23.9■■□□□ 1.42
TRIM28-202ENST00000341753 KIF9Q9HAQ2 790 aa23.9■■□□□ 1.42
TRIM28-202ENST00000341753 BATF3Q9NR55 127 aa23.9■■□□□ 1.42
TRIM28-202ENST00000341753 RBM26Q5T8P6 1007 aaKnown RBP23.9■■□□□ 1.42
TRIM28-202ENST00000341753 PPM1KQ8N3J5 372 aa23.9■■□□□ 1.42
TRIM28-202ENST00000341753 C9orf72Q96LT7 481 aa23.9■■□□□ 1.42
TRIM28-202ENST00000341753 CBWD1Q9BRT8 395 aa23.9■■□□□ 1.42
TRIM28-202ENST00000341753 TRIM7Q9C029 511 aa23.9■■□□□ 1.42
TRIM28-202ENST00000341753 CAPRIN2Q6IMN6 1127 aaKnown RBP23.89■■□□□ 1.42
TRIM28-202ENST00000341753 TRMT1LQ7Z2T5 733 aaKnown RBP23.89■■□□□ 1.42
TRIM28-202ENST00000341753 NINJ2Q9NZG7 142 aa23.89■■□□□ 1.42
TRIM28-202ENST00000341753 O00370 1275 aa23.89■■□□□ 1.41
TRIM28-202ENST00000341753 SPAG7O75391 227 aa23.89■■□□□ 1.41
TRIM28-202ENST00000341753 BMP3P12645 472 aa23.89■■□□□ 1.41
TRIM28-202ENST00000341753 ABL2P42684 1182 aa23.89■■□□□ 1.41
TRIM28-202ENST00000341753 SLC15A2Q16348 729 aa23.89■■□□□ 1.41
TRIM28-202ENST00000341753 NFIL3Q16649 462 aa23.89■■□□□ 1.41
TRIM28-202ENST00000341753 RHBDF2Q6PJF5 856 aa23.89■■□□□ 1.41
TRIM28-202ENST00000341753 NOCTQ9UK39 431 aaKnown RBP23.89■■□□□ 1.41
TRIM28-202ENST00000341753 NAALADL1Q9UQQ1 740 aa23.89■■□□□ 1.41
TRIM28-202ENST00000341753 IGLV3-22A0A075B6J6 115 aa23.88■■□□□ 1.41
TRIM28-202ENST00000341753 K7ENM7 598 aa23.88■■□□□ 1.41
TRIM28-202ENST00000341753 PLSCR1O15162 318 aa23.88■■□□□ 1.41
TRIM28-202ENST00000341753 VAMP7P51809 220 aa23.88■■□□□ 1.41
TRIM28-202ENST00000341753 TAF11Q15544 211 aa23.88■■□□□ 1.41
TRIM28-202ENST00000341753 PLEKHO2Q8TD55 490 aa23.88■■□□□ 1.41
TRIM28-202ENST00000341753 SH2D3AQ9BRG2 576 aa23.88■■□□□ 1.41
TRIM28-202ENST00000341753 MYLK2Q9H1R3 596 aa23.88■■□□□ 1.41
TRIM28-202ENST00000341753 LRRC19Q9H756 370 aa23.88■■□□□ 1.41
TRIM28-202ENST00000341753 GOLGA8IPA6NC78 632 aa23.88■■□□□ 1.41
TRIM28-202ENST00000341753 GOLGA8JA6NMD2 632 aa23.88■■□□□ 1.41
TRIM28-202ENST00000341753 HIP1RO75146 1068 aa23.88■■□□□ 1.41
TRIM28-202ENST00000341753 SMNDC1O75940 238 aaKnown RBP eCLIP23.88■■□□□ 1.419e-8■■□□□ 14.2
TRIM28-202ENST00000341753 RAD17O75943 681 aa23.88■■□□□ 1.41
TRIM28-202ENST00000341753 TARSP26639 723 aaKnown RBP23.88■■□□□ 1.41
TRIM28-202ENST00000341753 ADCY8P40145 1251 aa23.88■■□□□ 1.41
TRIM28-202ENST00000341753 CCDC174Q6PII3 467 aa23.88■■□□□ 1.41
TRIM28-202ENST00000341753 PITPNM3Q9BZ71 974 aa23.88■■□□□ 1.41
TRIM28-202ENST00000341753 PDGFDQ9GZP0 370 aaPredicted RBP23.88■■□□□ 1.41
TRIM28-202ENST00000341753 NKIRAS1Q9NYS0 192 aa23.88■■□□□ 1.41
TRIM28-202ENST00000341753 WHRNQ9P202 907 aa23.88■■□□□ 1.41
TRIM28-202ENST00000341753 SERPINA10Q9UK55 444 aa23.88■■□□□ 1.41
TRIM28-202ENST00000341753 ZMYND8Q9ULU4 1186 aaPredicted RBP23.88■■□□□ 1.41
TRIM28-202ENST00000341753 CFBP00751 764 aa23.87■■□□□ 1.41
TRIM28-202ENST00000341753 TAC1P20366 129 aa23.87■■□□□ 1.41
TRIM28-202ENST00000341753 ATP5DP30049 168 aa23.87■■□□□ 1.41
TRIM28-202ENST00000341753 CIITAP33076 1130 aa23.87■■□□□ 1.41
TRIM28-202ENST00000341753 PSPC1Q8WXF1 523 aaKnown RBP23.87■■□□□ 1.41
TRIM28-202ENST00000341753 SNF8Q96H20 258 aa23.87■■□□□ 1.41
TRIM28-202ENST00000341753 HEMGNQ9BXL5 484 aa23.87■■□□□ 1.41
TRIM28-202ENST00000341753 ADAM33Q9BZ11 813 aa23.87■■□□□ 1.41
TRIM28-202ENST00000341753 R3HDM2Q9Y2K5 976 aaKnown RBP23.87■■□□□ 1.41
TRIM28-202ENST00000341753 ZBTB12Q9Y330 459 aaPredicted RBP23.87■■□□□ 1.41
TRIM28-202ENST00000341753 DDX39AO00148 427 aaKnown RBP23.87■■□□□ 1.41
TRIM28-202ENST00000341753 PPP1R12AO14974 1030 aaPredicted RBP23.87■■□□□ 1.41
TRIM28-202ENST00000341753 FMO1Q01740 532 aa23.87■■□□□ 1.41
TRIM28-202ENST00000341753 TMED2Q15363 201 aa23.87■■□□□ 1.41
TRIM28-202ENST00000341753 C2CD6Q53TS8 623 aa23.87■■□□□ 1.41
TRIM28-202ENST00000341753 ERP27Q96DN0 273 aa23.87■■□□□ 1.41
TRIM28-202ENST00000341753 KREMEN1Q96MU8 473 aa23.87■■□□□ 1.41
TRIM28-202ENST00000341753 PKD2L1Q9P0L9 805 aa23.87■■□□□ 1.41
TRIM28-202ENST00000341753 PRR12Q9ULL5 1215 aa23.87■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms