RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 TRIM58Q8NG06 486 aa14.45□□□□□ -0.1
HMGB1-202ENST00000339872 LNX1Q8TBB1 728 aaPredicted RBP14.45□□□□□ -0.1
HMGB1-202ENST00000339872 TATDN2Q93075 761 aa14.45□□□□□ -0.1
HMGB1-202ENST00000339872 FAM212AQ96EL1 285 aa14.45□□□□□ -0.1
HMGB1-202ENST00000339872 CARD6Q9BX69 1037 aa14.45□□□□□ -0.1
HMGB1-202ENST00000339872 PTPRHQ9HD43 1115 aa14.45□□□□□ -0.1
HMGB1-202ENST00000339872 C1orf112Q9NSG2 853 aa14.45□□□□□ -0.1
HMGB1-202ENST00000339872 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.45□□□□□ -0.1
HMGB1-202ENST00000339872 SALL4Q9UJQ4 1053 aa14.45□□□□□ -0.1
HMGB1-202ENST00000339872 V9GYY5 206 aaPredicted RBP14.45□□□□□ -0.1
HMGB1-202ENST00000339872 ANK1P16157 1881 aa14.45□□□□□ -0.1
HMGB1-202ENST00000339872 BUB1O43683 1085 aa14.44□□□□□ -0.1
HMGB1-202ENST00000339872 ZC3H11AO75152 810 aaKnown RBP eCLIP14.44□□□□□ -0.1
HMGB1-202ENST00000339872 AKR1A1P14550 325 aa14.44□□□□□ -0.1
HMGB1-202ENST00000339872 OSTNP61366 133 aa14.44□□□□□ -0.1
HMGB1-202ENST00000339872 NOGQ13253 232 aa14.44□□□□□ -0.1
HMGB1-202ENST00000339872 DNAAF5Q86Y56 855 aa14.44□□□□□ -0.1
HMGB1-202ENST00000339872 KIAA0319LQ8IZA0 1049 aa14.44□□□□□ -0.1
HMGB1-202ENST00000339872 OR5B17Q8NGF7 314 aa14.44□□□□□ -0.1
HMGB1-202ENST00000339872 U2AF1L4Q8WU68 220 aaKnown RBP14.44□□□□□ -0.1
HMGB1-202ENST00000339872 SHC3Q92529 594 aa14.44□□□□□ -0.1
HMGB1-202ENST00000339872 CDT1Q9H211 546 aa14.44□□□□□ -0.1
HMGB1-202ENST00000339872 SEPT11Q9NVA2 429 aaKnown RBP14.44□□□□□ -0.1
HMGB1-202ENST00000339872 CPSF3Q9UKF6 684 aaKnown RBP14.44□□□□□ -0.1
HMGB1-202ENST00000339872 GABRQQ9UN88 632 aa14.44□□□□□ -0.1
HMGB1-202ENST00000339872 TNFSF13BQ9Y275 285 aa14.44□□□□□ -0.1
HMGB1-202ENST00000339872 NRCAMQ92823 1304 aa14.44□□□□□ -0.1
HMGB1-202ENST00000339872 PCNTO95613 3336 aa14.44□□□□□ -0.1
HMGB1-202ENST00000339872 TOMM70O94826 608 aa14.44□□□□□ -0.1
HMGB1-202ENST00000339872 CLSTN1O94985 981 aa14.44□□□□□ -0.1
HMGB1-202ENST00000339872 VNN1O95497 513 aa14.44□□□□□ -0.1
HMGB1-202ENST00000339872 ATP1A1P05023 1023 aaKnown RBP14.44□□□□□ -0.1
HMGB1-202ENST00000339872 NAP1L1P55209 391 aaKnown RBP14.44□□□□□ -0.1
HMGB1-202ENST00000339872 NAA30Q147X3 362 aaPredicted RBP14.44□□□□□ -0.1
HMGB1-202ENST00000339872 FAM187BQ17R55 369 aa14.44□□□□□ -0.1
HMGB1-202ENST00000339872 WDR44Q5JSH3 913 aa14.44□□□□□ -0.1
HMGB1-202ENST00000339872 CEP120Q8N960 986 aa14.44□□□□□ -0.1
HMGB1-202ENST00000339872 OLIG1Q8TAK6 271 aa14.44□□□□□ -0.1
HMGB1-202ENST00000339872 ALS2CR12Q96Q35 445 aa14.44□□□□□ -0.1
HMGB1-202ENST00000339872 SYT11Q9BT88 431 aa14.44□□□□□ -0.1
HMGB1-202ENST00000339872 FAM49AQ9H0Q0 323 aaPredicted RBP14.44□□□□□ -0.1
HMGB1-202ENST00000339872 NENFQ9UMX5 172 aa14.44□□□□□ -0.1
HMGB1-202ENST00000339872 Q9Y3F1 56 aa14.44□□□□□ -0.1
HMGB1-202ENST00000339872 PHACTR2O75167 634 aa14.43□□□□□ -0.1
HMGB1-202ENST00000339872 PSEN2P49810 448 aa14.43□□□□□ -0.1
HMGB1-202ENST00000339872 AMHR2Q16671 573 aa14.43□□□□□ -0.1
HMGB1-202ENST00000339872 FAM71AQ8IYT1 594 aa14.43□□□□□ -0.1
HMGB1-202ENST00000339872 TRPV1Q8NER1 839 aa14.43□□□□□ -0.1
HMGB1-202ENST00000339872 SLC20A1Q8WUM9 679 aa14.43□□□□□ -0.1
HMGB1-202ENST00000339872 TRIB2Q92519 343 aa14.43□□□□□ -0.1
HMGB1-202ENST00000339872 CPB2Q96IY4 423 aa14.43□□□□□ -0.1
HMGB1-202ENST00000339872 NOX5Q96PH1 765 aa14.43□□□□□ -0.1
HMGB1-202ENST00000339872 CDC23Q9UJX2 597 aa14.43□□□□□ -0.1
HMGB1-202ENST00000339872 TNFAIP3P21580 790 aa14.43□□□□□ -0.1
HMGB1-202ENST00000339872 FLT3LGP49771 235 aa14.43□□□□□ -0.1
HMGB1-202ENST00000339872 GCNT1Q02742 428 aa14.43□□□□□ -0.1
HMGB1-202ENST00000339872 TMEM62Q0P6H9 643 aa14.43□□□□□ -0.1
HMGB1-202ENST00000339872 FSCN1Q16658 493 aaKnown RBP14.43□□□□□ -0.1
HMGB1-202ENST00000339872 ZNF410Q86VK4 478 aa14.43□□□□□ -0.1
HMGB1-202ENST00000339872 WDR49Q8IV35 697 aa14.43□□□□□ -0.1
HMGB1-202ENST00000339872 RNF10Q8N5U6 811 aaKnown RBP14.43□□□□□ -0.1
HMGB1-202ENST00000339872 SLC30A5Q8TAD4 765 aa14.43□□□□□ -0.1
HMGB1-202ENST00000339872 DHX38Q92620 1227 aaKnown RBP14.43□□□□□ -0.1
HMGB1-202ENST00000339872 AGPAT1Q99943 283 aa14.43□□□□□ -0.1
HMGB1-202ENST00000339872 HDAC6Q9UBN7 1215 aa14.43□□□□□ -0.1
HMGB1-202ENST00000339872 ANO9A1A5B4 782 aa14.42□□□□□ -0.1
HMGB1-202ENST00000339872 TMCO5BA8MYB1 307 aa14.42□□□□□ -0.1
HMGB1-202ENST00000339872 CYP26A1O43174 497 aa14.42□□□□□ -0.1
HMGB1-202ENST00000339872 ERLIN2O94905 339 aa14.42□□□□□ -0.1
HMGB1-202ENST00000339872 AMPD2Q01433 879 aa14.42□□□□□ -0.1
HMGB1-202ENST00000339872 KIZQ2M2Z5 673 aa14.42□□□□□ -0.1
HMGB1-202ENST00000339872 MFSD14CQ5VZR4 134 aa14.42□□□□□ -0.1
HMGB1-202ENST00000339872 SPOPLQ6IQ16 392 aa14.42□□□□□ -0.1
HMGB1-202ENST00000339872 ENOSF1Q7L5Y1 443 aa14.42□□□□□ -0.1
HMGB1-202ENST00000339872 CAPNS2Q96L46 248 aa14.42□□□□□ -0.1
HMGB1-202ENST00000339872 ARID3AQ99856 593 aa14.42□□□□□ -0.1
HMGB1-202ENST00000339872 MTMR12Q9C0I1 747 aa14.42□□□□□ -0.1
HMGB1-202ENST00000339872 PDZD7Q9H5P4 517 aa14.42□□□□□ -0.1
HMGB1-202ENST00000339872 GINS2Q9Y248 185 aa14.42□□□□□ -0.1
HMGB1-202ENST00000339872 TRIP12Q14669 1992 aaPredicted RBP14.42□□□□□ -0.1
HMGB1-202ENST00000339872 GPR25O00155 361 aa14.42□□□□□ -0.1
HMGB1-202ENST00000339872 HAS3O00219 553 aa14.42□□□□□ -0.1
HMGB1-202ENST00000339872 SGPL1O95470 568 aa14.42□□□□□ -0.1
HMGB1-202ENST00000339872 C6orf222P0C671 652 aaPredicted RBP14.42□□□□□ -0.1
HMGB1-202ENST00000339872 CYP2C9P11712 490 aa14.42□□□□□ -0.1
HMGB1-202ENST00000339872 CYBAP13498 195 aa14.42□□□□□ -0.1
HMGB1-202ENST00000339872 ARF4P18085 180 aaPredicted RBP14.42□□□□□ -0.1
HMGB1-202ENST00000339872 AP3M2P53677 418 aa14.42□□□□□ -0.1
HMGB1-202ENST00000339872 PRKCZQ05513 592 aa14.42□□□□□ -0.1
HMGB1-202ENST00000339872 NCBP1Q09161 790 aaKnown RBP14.42□□□□□ -0.1
HMGB1-202ENST00000339872 TUBB2AQ13885 445 aa14.42□□□□□ -0.1
HMGB1-202ENST00000339872 SURF1Q15526 300 aa14.42□□□□□ -0.1
HMGB1-202ENST00000339872 TUBB2BQ9BVA1 445 aa14.42□□□□□ -0.1
HMGB1-202ENST00000339872 KATNAL1Q9BW62 490 aa14.42□□□□□ -0.1
HMGB1-202ENST00000339872 CASP8AP2Q9UKL3 1982 aa14.42□□□□□ -0.1
HMGB1-202ENST00000339872 FAM170AA1A519 330 aa14.41□□□□□ -0.1
HMGB1-202ENST00000339872 TSPAN1O60635 241 aa14.41□□□□□ -0.1
HMGB1-202ENST00000339872 TFRCP02786 760 aaKnown RBP14.41□□□□□ -0.1
HMGB1-202ENST00000339872 H2AFZP0C0S5 128 aa14.41□□□□□ -0.1
HMGB1-202ENST00000339872 CXCL8P10145 99 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms