RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 FAM212AQ96EL1 285 aa24.1■■□□□ 1.45
SDC3-202ENST00000339394 CASD1Q96PB1 797 aa24.1■■□□□ 1.45
SDC3-202ENST00000339394 BPIFA3Q9BQP9 254 aa24.1■■□□□ 1.45
SDC3-202ENST00000339394 PLEKHA5Q9HAU0 1116 aa24.1■■□□□ 1.45
SDC3-202ENST00000339394 TTC3P53804 2025 aa24.1■■□□□ 1.45
SDC3-202ENST00000339394 LACTBL1A8MY62 500 aa24.09■■□□□ 1.45
SDC3-202ENST00000339394 WNT7BP56706 349 aa24.09■■□□□ 1.45
SDC3-202ENST00000339394 TPD52L1Q16890 204 aaPredicted RBP24.09■■□□□ 1.45
SDC3-202ENST00000339394 XKR4Q5GH76 650 aa24.09■■□□□ 1.45
SDC3-202ENST00000339394 SPATA1Q5VX52 437 aa24.09■■□□□ 1.45
SDC3-202ENST00000339394 FILIP1Q7Z7B0 1213 aa24.09■■□□□ 1.45
SDC3-202ENST00000339394 TDHQ8IZJ6 230 aa24.09■■□□□ 1.45
SDC3-202ENST00000339394 ABI1Q8IZP0 508 aa24.09■■□□□ 1.45
SDC3-202ENST00000339394 MFSD14AQ96MC6 490 aa24.09■■□□□ 1.45
SDC3-202ENST00000339394 MKNK1Q9BUB5 465 aa24.09■■□□□ 1.45
SDC3-202ENST00000339394 MIOSQ9NXC5 875 aa24.09■■□□□ 1.45
SDC3-202ENST00000339394 CNTN3Q9P232 1028 aa24.09■■□□□ 1.45
SDC3-202ENST00000339394 INPP5FQ9Y2H2 1132 aa24.09■■□□□ 1.45
SDC3-202ENST00000339394 TULP1O00294 542 aaPredicted RBP24.08■■□□□ 1.45
SDC3-202ENST00000339394 MAPK13O15264 365 aa24.08■■□□□ 1.45
SDC3-202ENST00000339394 INPPL1O15357 1258 aa24.08■■□□□ 1.45
SDC3-202ENST00000339394 PPP2R3AQ06190 1150 aa24.08■■□□□ 1.45
SDC3-202ENST00000339394 CYP24A1Q07973 514 aa24.08■■□□□ 1.45
SDC3-202ENST00000339394 FAM186BQ8IYM0 893 aa24.08■■□□□ 1.45
SDC3-202ENST00000339394 ZNF689Q96CS4 500 aaPredicted RBP24.08■■□□□ 1.45
SDC3-202ENST00000339394 ZMAT2Q96NC0 199 aaKnown RBP24.08■■□□□ 1.45
SDC3-202ENST00000339394 ZBED2Q9BTP6 218 aa24.08■■□□□ 1.45
SDC3-202ENST00000339394 TMEM117Q9H0C3 514 aa24.08■■□□□ 1.45
SDC3-202ENST00000339394 RC3H2Q9HBD1 1191 aaKnown RBP24.08■■□□□ 1.45
SDC3-202ENST00000339394 NFE2L3Q9Y4A8 694 aa24.08■■□□□ 1.45
SDC3-202ENST00000339394 PTGESO14684 152 aa24.08■■□□□ 1.44
SDC3-202ENST00000339394 SLC16A3O15427 465 aaKnown RBP24.08■■□□□ 1.44
SDC3-202ENST00000339394 FGFR1OPO95684 399 aaKnown RBP24.08■■□□□ 1.44
SDC3-202ENST00000339394 CAVIN2O95810 425 aa24.08■■□□□ 1.44
SDC3-202ENST00000339394 EPB41P11171 864 aaKnown RBP24.08■■□□□ 1.44
SDC3-202ENST00000339394 MYL5Q02045 173 aa24.08■■□□□ 1.44
SDC3-202ENST00000339394 NOMO2Q5JPE7 1267 aa24.08■■□□□ 1.44
SDC3-202ENST00000339394 FAM109BQ6ICB4 259 aaPredicted RBP24.08■■□□□ 1.44
SDC3-202ENST00000339394 RPS6KC1Q96S38 1066 aa24.08■■□□□ 1.44
SDC3-202ENST00000339394 YME1L1Q96TA2 773 aa24.08■■□□□ 1.44
SDC3-202ENST00000339394 TSPY26PQ9H489 355 aa24.08■■□□□ 1.44
SDC3-202ENST00000339394 ASB7Q9H672 318 aa24.08■■□□□ 1.44
SDC3-202ENST00000339394 PDE11AQ9HCR9 933 aa24.08■■□□□ 1.44
SDC3-202ENST00000339394 SMIM28A0A1B0GU29 152 aa24.07■■□□□ 1.44
SDC3-202ENST00000339394 TBKBP1A7MCY6 615 aa24.07■■□□□ 1.44
SDC3-202ENST00000339394 IL18RAPO95256 599 aa24.07■■□□□ 1.44
SDC3-202ENST00000339394 POMCP01189 267 aa24.07■■□□□ 1.44
SDC3-202ENST00000339394 SCNN1GP51170 649 aa24.07■■□□□ 1.44
SDC3-202ENST00000339394 HTRA4P83105 476 aaPredicted RBP24.07■■□□□ 1.44
SDC3-202ENST00000339394 SPAG1Q07617 926 aa24.07■■□□□ 1.44
SDC3-202ENST00000339394 GLRA4Q5JXX5 417 aa24.07■■□□□ 1.44
SDC3-202ENST00000339394 CD302Q8IX05 232 aa24.07■■□□□ 1.44
SDC3-202ENST00000339394 AOPEPQ8N6M6 819 aa24.07■■□□□ 1.44
SDC3-202ENST00000339394 CCDC127Q96BQ5 260 aa24.07■■□□□ 1.44
SDC3-202ENST00000339394 BORCS6Q96GS4 357 aa24.07■■□□□ 1.44
SDC3-202ENST00000339394 PLAGL2Q9UPG8 496 aa24.07■■□□□ 1.44
SDC3-202ENST00000339394 GRXCR1A8MXD5 290 aa24.06■■□□□ 1.44
SDC3-202ENST00000339394 KCNE1P15382 129 aa24.06■■□□□ 1.44
SDC3-202ENST00000339394 NCAPHQ15003 741 aa24.06■■□□□ 1.44
SDC3-202ENST00000339394 PSMD6Q15008 389 aa24.06■■□□□ 1.44
SDC3-202ENST00000339394 INTS8Q75QN2 995 aaKnown RBP24.06■■□□□ 1.44
SDC3-202ENST00000339394 IRF2BP1Q8IU81 584 aa24.06■■□□□ 1.44
SDC3-202ENST00000339394 DHX40Q8IX18 779 aaKnown RBP24.06■■□□□ 1.44
SDC3-202ENST00000339394 RSPH1Q8WYR4 309 aa24.06■■□□□ 1.44
SDC3-202ENST00000339394 RAD9AQ99638 391 aa24.06■■□□□ 1.44
SDC3-202ENST00000339394 SAMSN1Q9NSI8 373 aaKnown RBP24.06■■□□□ 1.44
SDC3-202ENST00000339394 KANSL3Q9P2N6 904 aa24.06■■□□□ 1.44
SDC3-202ENST00000339394 INSL6Q9Y581 213 aa24.06■■□□□ 1.44
SDC3-202ENST00000339394 IKBKBO14920 756 aa24.05■■□□□ 1.44
SDC3-202ENST00000339394 TLL1O43897 1013 aa24.05■■□□□ 1.44
SDC3-202ENST00000339394 GNA14O95837 355 aa24.05■■□□□ 1.44
SDC3-202ENST00000339394 IQCB1Q15051 598 aa24.05■■□□□ 1.44
SDC3-202ENST00000339394 PAN2Q504Q3 1202 aaKnown RBP24.05■■□□□ 1.44
SDC3-202ENST00000339394 URGCPQ8TCY9 931 aa24.05■■□□□ 1.44
SDC3-202ENST00000339394 PLEKHO2Q8TD55 490 aa24.05■■□□□ 1.44
SDC3-202ENST00000339394 PARD3BQ8TEW8 1205 aa24.05■■□□□ 1.44
SDC3-202ENST00000339394 ANP32EQ9BTT0 268 aa24.05■■□□□ 1.44
SDC3-202ENST00000339394 THAP9Q9H5L6 903 aa24.05■■□□□ 1.44
SDC3-202ENST00000339394 CBX8Q9HC52 389 aa24.05■■□□□ 1.44
SDC3-202ENST00000339394 TBC1D13Q9NVG8 400 aa24.05■■□□□ 1.44
SDC3-202ENST00000339394 FANCLQ9NW38 375 aa24.05■■□□□ 1.44
SDC3-202ENST00000339394 THP07101 528 aa24.04■■□□□ 1.44
SDC3-202ENST00000339394 DLATP10515 647 aaKnown RBP24.04■■□□□ 1.44
SDC3-202ENST00000339394 RABGGTBP53611 331 aa24.04■■□□□ 1.44
SDC3-202ENST00000339394 HSP90AA4PQ58FG1 418 aa24.04■■□□□ 1.44
SDC3-202ENST00000339394 JADE1Q6IE81 842 aa24.04■■□□□ 1.44
SDC3-202ENST00000339394 FRMD5Q7Z6J6 570 aa24.04■■□□□ 1.44
SDC3-202ENST00000339394 KIF12Q96FN5 646 aa24.04■■□□□ 1.44
SDC3-202ENST00000339394 PPP1R10Q96QC0 940 aaKnown RBP24.04■■□□□ 1.44
SDC3-202ENST00000339394 FNBP1Q96RU3 617 aa24.04■■□□□ 1.44
SDC3-202ENST00000339394 POP1Q99575 1024 aaKnown RBP24.04■■□□□ 1.44
SDC3-202ENST00000339394 ARMCX3Q9UH62 379 aaPredicted RBP24.04■■□□□ 1.44
SDC3-202ENST00000339394 NFICP08651 508 aa24.03■■□□□ 1.44
SDC3-202ENST00000339394 KRT13P13646 458 aa24.03■■□□□ 1.44
SDC3-202ENST00000339394 BFSP1Q12934 665 aa24.03■■□□□ 1.44
SDC3-202ENST00000339394 BTG3Q14201 252 aaPredicted RBP24.03■■□□□ 1.44
SDC3-202ENST00000339394 SURF1Q15526 300 aa24.03■■□□□ 1.44
SDC3-202ENST00000339394 ZBTB6Q15916 424 aa24.03■■□□□ 1.44
SDC3-202ENST00000339394 CCDC40Q4G0X9 1142 aa24.03■■□□□ 1.44
SDC3-202ENST00000339394 FAM200AQ8TCP9 573 aa24.03■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms