RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 EBF3Q9H4W6 596 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 CNNM1Q9NRU3 951 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 ZNF212Q9UDV6 495 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 GPC6Q9Y625 555 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-201ENST00000328923 SSU72P8A0A1W2PR75 194 aa12.6□□□□□ -0.39
SHMT2-201ENST00000328923 RBAK-RBAKDNI3L0D1 243 aa12.6□□□□□ -0.39
SHMT2-201ENST00000328923 VDRP11473 427 aa12.6□□□□□ -0.39
SHMT2-201ENST00000328923 MSLNQ13421 630 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-201ENST00000328923 CYTH1Q15438 398 aa12.6□□□□□ -0.39
SHMT2-201ENST00000328923 CTC1Q2NKJ3 1217 aa12.6□□□□□ -0.39
SHMT2-201ENST00000328923 C6orf118Q5T5N4 469 aa12.6□□□□□ -0.39
SHMT2-201ENST00000328923 C1orf228Q6PIY5 440 aa12.6□□□□□ -0.39
SHMT2-201ENST00000328923 P2RX5Q93086 422 aa12.6□□□□□ -0.39
SHMT2-201ENST00000328923 GPR101Q96P66 508 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-201ENST00000328923 ZKSCAN3Q9BRR0 538 aa12.6□□□□□ -0.39
SHMT2-201ENST00000328923 NOC4LQ9BVI4 516 aaKnown RBP12.6□□□□□ -0.39
SHMT2-201ENST00000328923 MRPL46Q9H2W6 279 aaKnown RBP12.6□□□□□ -0.39
SHMT2-201ENST00000328923 PABPC3Q9H361 631 aaKnown RBP12.6□□□□□ -0.39
SHMT2-201ENST00000328923 KBTBD4Q9NVX7 518 aa12.6□□□□□ -0.39
SHMT2-201ENST00000328923 LY75O60449 1722 aa12.6□□□□□ -0.39
SHMT2-201ENST00000328923 FOXO6A8MYZ6 492 aa12.6□□□□□ -0.39
SHMT2-201ENST00000328923 EPHB6O15197 1021 aa12.6□□□□□ -0.39
SHMT2-201ENST00000328923 TBC1D12O60347 775 aa12.6□□□□□ -0.39
SHMT2-201ENST00000328923 DKC1O60832 514 aaKnown RBP eCLIP12.6□□□□□ -0.39
SHMT2-201ENST00000328923 PTPN4P29074 926 aa12.6□□□□□ -0.39
SHMT2-201ENST00000328923 CDR2Q01850 454 aa12.6□□□□□ -0.39
SHMT2-201ENST00000328923 LPIN1Q14693 890 aa12.6□□□□□ -0.39
SHMT2-201ENST00000328923 MTFR1Q15390 333 aa12.6□□□□□ -0.39
SHMT2-201ENST00000328923 PARP10Q53GL7 1025 aa12.6□□□□□ -0.39
SHMT2-201ENST00000328923 STARD8Q92502 1023 aa12.6□□□□□ -0.39
SHMT2-201ENST00000328923 STMN2Q93045 179 aa12.6□□□□□ -0.39
SHMT2-201ENST00000328923 SLC39A3Q9BRY0 314 aa12.6□□□□□ -0.39
SHMT2-201ENST00000328923 CEP44Q9C0F1 390 aa12.6□□□□□ -0.39
SHMT2-201ENST00000328923 EPB41L1Q9H4G0 881 aa12.6□□□□□ -0.39
SHMT2-201ENST00000328923 TLE6Q9H808 572 aa12.6□□□□□ -0.39
SHMT2-201ENST00000328923 FAF1Q9UNN5 650 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-201ENST00000328923 RBMX2Q9Y388 322 aaKnown RBP12.6□□□□□ -0.39
SHMT2-201ENST00000328923 TNKSO95271 1327 aa12.59□□□□□ -0.39
SHMT2-201ENST00000328923 TRIM64CA6NLI5 447 aa12.59□□□□□ -0.39
SHMT2-201ENST00000328923 MGEA5O60502 916 aa12.59□□□□□ -0.39
SHMT2-201ENST00000328923 CBFA2T3O75081 653 aa12.59□□□□□ -0.39
SHMT2-201ENST00000328923 EYA4O95677 639 aa12.59□□□□□ -0.39
SHMT2-201ENST00000328923 TFPTP0C1Z6 253 aa12.59□□□□□ -0.39
SHMT2-201ENST00000328923 CYP2C9P11712 490 aa12.59□□□□□ -0.39
SHMT2-201ENST00000328923 MTIF2P46199 727 aaKnown RBP12.59□□□□□ -0.39
SHMT2-201ENST00000328923 ERFP50548 548 aa12.59□□□□□ -0.39
SHMT2-201ENST00000328923 AUHQ13825 339 aaKnown RBP12.59□□□□□ -0.39
SHMT2-201ENST00000328923 ADRM1Q16186 407 aa12.59□□□□□ -0.39
SHMT2-201ENST00000328923 ASTE1Q2TB18 679 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-201ENST00000328923 NAALADL2Q58DX5 795 aa12.59□□□□□ -0.39
SHMT2-201ENST00000328923 TAOK1Q7L7X3 1001 aa12.59□□□□□ -0.39
SHMT2-201ENST00000328923 CCDC84Q86UT8 332 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-201ENST00000328923 ESR2Q92731 530 aa12.59□□□□□ -0.39
SHMT2-201ENST00000328923 NSMCE3Q96MG7 304 aa12.59□□□□□ -0.39
SHMT2-201ENST00000328923 NUP85Q9BW27 656 aa12.59□□□□□ -0.39
SHMT2-201ENST00000328923 NT5C3AQ9H0P0 336 aa12.59□□□□□ -0.39
SHMT2-201ENST00000328923 AIPL1Q9NZN9 384 aa12.59□□□□□ -0.39
SHMT2-201ENST00000328923 SIK3Q9Y2K2 1263 aa12.59□□□□□ -0.39
SHMT2-201ENST00000328923 SH3PXD2BA1X283 911 aa12.59□□□□□ -0.39
SHMT2-201ENST00000328923 IQCA1LA6NCM1 817 aa12.59□□□□□ -0.39
SHMT2-201ENST00000328923 TRAFD1O14545 582 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-201ENST00000328923 XPOTO43592 962 aaKnown RBP12.59□□□□□ -0.39
SHMT2-201ENST00000328923 PDE8BO95263 885 aa12.59□□□□□ -0.39
SHMT2-201ENST00000328923 ZBED1O96006 694 aa12.59□□□□□ -0.39
SHMT2-201ENST00000328923 APBA3O96018 575 aa12.59□□□□□ -0.39
SHMT2-201ENST00000328923 VSTM1Q6UX27 236 aa12.59□□□□□ -0.39
SHMT2-201ENST00000328923 RFX8Q6ZV50 586 aa12.59□□□□□ -0.39
SHMT2-201ENST00000328923 VASH1Q7L8A9 365 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-201ENST00000328923 RAVER1Q8IY67 606 aaKnown RBP12.59□□□□□ -0.39
SHMT2-201ENST00000328923 C4orf32Q8N8J7 132 aa12.59□□□□□ -0.39
SHMT2-201ENST00000328923 LINC00116Q8NCU8 138 aa12.59□□□□□ -0.39
SHMT2-201ENST00000328923 PRICKLE1Q96MT3 831 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-201ENST00000328923 FNBP1Q96RU3 617 aa12.59□□□□□ -0.39
SHMT2-201ENST00000328923 BHMT2Q9H2M3 363 aa12.59□□□□□ -0.39
SHMT2-201ENST00000328923 GOLPH3Q9H4A6 298 aa12.59□□□□□ -0.39
SHMT2-201ENST00000328923 KCNK9Q9NPC2 374 aa12.59□□□□□ -0.39
SHMT2-201ENST00000328923 NDUFA13Q9P0J0 144 aa12.59□□□□□ -0.39
SHMT2-201ENST00000328923 NIP7Q9Y221 180 aaKnown RBP eCLIP12.59□□□□□ -0.39
SHMT2-201ENST00000328923 HEMK1Q9Y5R4 338 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-201ENST00000328923 DUOX1Q9NRD9 1551 aa12.59□□□□□ -0.39
SHMT2-201ENST00000328923 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-201ENST00000328923 SPECC1L-ADORA2AF8WAN1 911 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 NKRFO15226 690 aaKnown RBP eCLIP12.58□□□□□ -0.4
SHMT2-201ENST00000328923 KDM1AO60341 852 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 DDAH1O94760 285 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 KCNA2P16389 499 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 MZF1P28698 734 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-201ENST00000328923 PRKCIP41743 596 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 YARSP54577 528 aaKnown RBP12.58□□□□□ -0.4
SHMT2-201ENST00000328923 PPIDQ08752 370 aaKnown RBP12.58□□□□□ -0.4
SHMT2-201ENST00000328923 CDC16Q13042 620 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 SPIDRQ14159 915 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 TGFBIQ15582 683 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 GPR162Q16538 588 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 ACAD11Q709F0 780 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 ANO5Q75V66 913 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 CATIPQ7Z7H3 387 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 CCSER1Q9C0I3 900 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 CCDC68Q9H2F9 335 aa12.58□□□□□ -0.4
SHMT2-201ENST00000328923 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.58□□□□□ -0.45e-12■■□□□ 11.4
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms