RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 FAM227BQ96M60 508 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 CCDC86Q9H6F5 360 aaKnown RBP8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 MLXIPLQ9NP71 852 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 AMFRQ9UKV5 643 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 DTNAQ9Y4J8 743 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 SBNO1A3KN83 1393 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 C1orf232A0A0U1RR37 186 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 PSMD11O00231 422 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 STK25O00506 426 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 MEFVO15553 781 aaPredicted RBP8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 MTSS1O43312 755 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 FKBP9O95302 570 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 STAT5AP42229 794 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 HNRNPH2P55795 449 aaKnown RBP8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 ARHGEF16Q5VV41 709 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 IQSEC1Q6DN90 963 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 FKBP9P1Q75LS8 142 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 ZNF557Q8N988 423 aaPredicted RBP8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 USP38Q8NB14 1042 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 AKAP1Q92667 903 aaKnown RBP eCLIP8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 USP26Q9BXU7 913 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 NLRP2Q9NX02 1062 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 SLC9A8Q9Y2E8 581 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 ANKRD6Q9Y2G4 727 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 AP1M2Q9Y6Q5 423 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 NUP155O75694 1391 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 TTC34A8MYJ7 566 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 ANXA1P04083 346 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 FAM153BP0C7A2 387 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 JUNDP17535 347 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 DDX5P17844 614 aaKnown RBP8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 MAN2A2P49641 1150 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 APBA1Q02410 837 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 STRN3Q13033 797 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 MKRN3Q13064 507 aaKnown RBP8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 KNOP1Q1ED39 458 aaKnown RBP8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 PRR5LQ6MZQ0 368 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 PMF1Q6P1K2 205 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 ACAD11Q709F0 780 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 TADA2BQ86TJ2 420 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 P3H2Q8IVL5 708 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 ANKFN1Q8N957 763 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 KLHL23Q8NBE8 558 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 AGR3Q8TD06 166 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 USP28Q96RU2 1077 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 HPF1Q9NWY4 346 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 KLHL28Q9NXS3 571 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 ORC3Q9UBD5 711 aaPredicted RBP8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 MAPK8IP1Q9UQF2 711 aa8.03□□□□□ -1.12
LIMCH1-201ENST00000313860 G3V2T6 193 aa8.02□□□□□ -1.12
LIMCH1-201ENST00000313860 GFPT2O94808 682 aa8.02□□□□□ -1.12
LIMCH1-201ENST00000313860 SRGAP2BP0DMP2 458 aa8.02□□□□□ -1.12
LIMCH1-201ENST00000313860 PSMA2P25787 234 aa8.02□□□□□ -1.12
LIMCH1-201ENST00000313860 TUBA1BP68363 451 aa8.02□□□□□ -1.12
LIMCH1-201ENST00000313860 PTK2Q05397 1052 aa8.02□□□□□ -1.12
LIMCH1-201ENST00000313860 PICALMQ13492 652 aa8.02□□□□□ -1.12
LIMCH1-201ENST00000313860 MIIPQ5JXC2 388 aa8.02□□□□□ -1.12
LIMCH1-201ENST00000313860 TUBA1AQ71U36 451 aa8.02□□□□□ -1.12
LIMCH1-201ENST00000313860 KBTBD7Q8WVZ9 684 aa8.02□□□□□ -1.12
LIMCH1-201ENST00000313860 ASPNQ9BXN1 380 aa8.02□□□□□ -1.12
LIMCH1-201ENST00000313860 MOV10L1Q9BXT6 1211 aaKnown RBP8.02□□□□□ -1.12
LIMCH1-201ENST00000313860 OSBPL6Q9BZF3 934 aa8.02□□□□□ -1.12
LIMCH1-201ENST00000313860 SPASTQ9UBP0 616 aa8.02□□□□□ -1.12
LIMCH1-201ENST00000313860 MEIS1O00470 390 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 ZMYND10O75800 440 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 PRKAR2AP13861 404 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 NSFP46459 744 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 COPS2P61201 443 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 DDR2Q16832 855 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 CLEC16AQ2KHT3 1053 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 HDGFL1Q5TGJ6 251 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 RNF219Q5W0B1 726 aaPredicted RBP8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 TYW3Q6IPR3 259 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 GPR141Q7Z602 305 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 USP48Q86UV5 1035 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 U2AF1L4Q8WU68 220 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 RFKQ969G6 155 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 YME1L1Q96TA2 773 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 DLGAP2Q9P1A6 1054 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 VPS54Q9P1Q0 977 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 TRDMT1O14717 391 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 PPIP5K2O43314 1243 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 EXOC3O60645 756 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 KLHL41O60662 606 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 FAM107AO95990 144 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 TBC1D8BQ0IIM8 1120 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 TUBB2AQ13885 445 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 MAD2L1BPQ15013 274 aaPredicted RBP8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 TYSND1Q2T9J0 566 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 ZNF772Q68DY9 489 aaPredicted RBP8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 ING5Q8WYH8 240 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 TUBB2BQ9BVA1 445 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 FUT8Q9BYC5 575 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 SMARCAL1Q9NZC9 954 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 ZFATQ9P243 1243 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 GPN3Q9UHW5 284 aaPredicted RBP8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 UACAQ9BZF9 1416 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 DCDC2BA2VCK2 349 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 E9PBE3 544 aa8.02□□□□□ -1.13
LIMCH1-201ENST00000313860 SLC33A1O00400 549 aaPredicted RBP8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms