RNA–Protein interactions for RNA: ENST00000279452.10

CD44-204, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-204ENST00000279452 TUSC3Q13454 348 aa7.12□□□□□ -1.27
CD44-204ENST00000279452 PNOCQ13519 176 aa7.12□□□□□ -1.27
CD44-204ENST00000279452 KYAT1Q16773 422 aa7.12□□□□□ -1.27
CD44-204ENST00000279452 TCEAL5Q5H9L2 206 aa7.12□□□□□ -1.27
CD44-204ENST00000279452 ZBTB41Q5SVQ8 909 aa7.12□□□□□ -1.27
CD44-204ENST00000279452 KIAA1841Q6NSI8 718 aa7.12□□□□□ -1.27
CD44-204ENST00000279452 CNNM4Q6P4Q7 775 aa7.12□□□□□ -1.27
CD44-204ENST00000279452 SLC39A4Q6P5W5 647 aa7.12□□□□□ -1.27
CD44-204ENST00000279452 HS2ST1Q7LGA3 356 aa7.12□□□□□ -1.27
CD44-204ENST00000279452 RBM23Q86U06 439 aaKnown RBP7.12□□□□□ -1.27
CD44-204ENST00000279452 TMEM173Q86WV6 379 aaPredicted RBP7.12□□□□□ -1.27
CD44-204ENST00000279452 FMR1NBQ8N0W7 255 aaPredicted RBP7.12□□□□□ -1.27
CD44-204ENST00000279452 VPS52Q8N1B4 723 aa7.12□□□□□ -1.27
CD44-204ENST00000279452 SLC39A11Q8N1S5 342 aa7.12□□□□□ -1.27
CD44-204ENST00000279452 SPPL3Q8TCT6 385 aa7.12□□□□□ -1.27
CD44-204ENST00000279452 KIF12Q96FN5 646 aa7.12□□□□□ -1.27
CD44-204ENST00000279452 IGSF21Q96ID5 467 aa7.12□□□□□ -1.27
CD44-204ENST00000279452 SNX27Q96L92 541 aa7.12□□□□□ -1.27
CD44-204ENST00000279452 FAM213AQ9BRX8 229 aa7.12□□□□□ -1.27
CD44-204ENST00000279452 COLEC11Q9BWP8 271 aa7.12□□□□□ -1.27
CD44-204ENST00000279452 HAPLN2Q9GZV7 340 aa7.12□□□□□ -1.27
CD44-204ENST00000279452 ST6GALNAC4Q9H4F1 302 aa7.12□□□□□ -1.27
CD44-204ENST00000279452 GOLGA2P5Q9HBQ8 144 aa7.12□□□□□ -1.27
CD44-204ENST00000279452 SLC38A7Q9NVC3 462 aa7.12□□□□□ -1.27
CD44-204ENST00000279452 RMND1Q9NWS8 449 aa7.12□□□□□ -1.27
CD44-204ENST00000279452 MIOSQ9NXC5 875 aa7.12□□□□□ -1.27
CD44-204ENST00000279452 AGO2Q9UKV8 859 aaKnown RBP7.12□□□□□ -1.27
CD44-204ENST00000279452 PCDHGC5Q9Y5F6 944 aa7.12□□□□□ -1.27
CD44-204ENST00000279452 ZMYM2Q9UBW7 1377 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 UBE4BO95155 1302 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 A0A0B4J269 797 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 SMIM28A0A1B0GU29 152 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 F8W810 466 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 C2CD2LO14523 706 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 ABLIM1O14639 778 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 CLIC2O15247 247 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 EIF3DO15371 548 aaKnown RBP eCLIP7.11□□□□□ -1.27
CD44-204ENST00000279452 PPP1R37O75864 691 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 KIF20AO95235 890 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 KIF4AO95239 1232 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 SMC2O95347 1197 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 URODP06132 367 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 DNAJB1P25685 340 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 IRS1P35568 1242 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 NRIP1P48552 1158 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 UBE2HP62256 183 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 PLCB3Q01970 1234 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 UBE3AQ05086 875 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 HSP90AA2PQ14568 343 aaPredicted RBP7.11□□□□□ -1.27
CD44-204ENST00000279452 SMC1AQ14683 1233 aaKnown RBP7.11□□□□□ -1.27
CD44-204ENST00000279452 LLGL2Q6P1M3 1020 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 CEP57Q86XR8 500 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 COLGALT2Q8IYK4 626 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 BCL7CQ8WUZ0 217 aaPredicted RBP7.11□□□□□ -1.27
CD44-204ENST00000279452 AUTS2Q8WXX7 1259 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 ERCC4Q92889 916 aaPredicted RBP7.11□□□□□ -1.27
CD44-204ENST00000279452 SMARCE1Q969G3 411 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 C18orf25Q96B23 403 aaPredicted RBP7.11□□□□□ -1.27
CD44-204ENST00000279452 PAAF1Q9BRP4 392 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 CBWD1Q9BRT8 395 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 CXCL16Q9H2A7 254 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 MARCH5Q9NX47 278 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 CLDND1Q9NY35 253 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 RBAKQ9NYW8 714 aaPredicted RBP7.11□□□□□ -1.27
CD44-204ENST00000279452 LMCD1Q9NZU5 365 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 TUBGCP4Q9UGJ1 667 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 MAPK8IP1Q9UQF2 711 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 NUB1Q9Y5A7 615 aa7.11□□□□□ -1.27
CD44-204ENST00000279452 TTC3P53804 2025 aa7.1□□□□□ -1.27
CD44-204ENST00000279452 SF3B1O75533 1304 aaKnown RBP eCLIP7.1□□□□□ -1.27
CD44-204ENST00000279452 LACTBL1A8MY62 500 aa7.1□□□□□ -1.27
CD44-204ENST00000279452 PODXLO00592 558 aa7.1□□□□□ -1.27
CD44-204ENST00000279452 PER2O15055 1255 aa7.1□□□□□ -1.27
CD44-204ENST00000279452 INPPL1O15357 1258 aa7.1□□□□□ -1.27
CD44-204ENST00000279452 XPOTO43592 962 aaKnown RBP7.1□□□□□ -1.27
CD44-204ENST00000279452 KLRC4O43908 158 aa7.1□□□□□ -1.27
CD44-204ENST00000279452 B3GAT3O94766 335 aa7.1□□□□□ -1.27
CD44-204ENST00000279452 SLC34A2O95436 690 aa7.1□□□□□ -1.27
CD44-204ENST00000279452 CXCL14O95715 111 aa7.1□□□□□ -1.27
CD44-204ENST00000279452 LDHAP00338 332 aaKnown RBP7.1□□□□□ -1.27
CD44-204ENST00000279452 NFICP08651 508 aa7.1□□□□□ -1.27
CD44-204ENST00000279452 SRGAP2BP0DMP2 458 aa7.1□□□□□ -1.27
CD44-204ENST00000279452 GARTP22102 1010 aa7.1□□□□□ -1.27
CD44-204ENST00000279452 MCM4P33991 863 aa7.1□□□□□ -1.27
CD44-204ENST00000279452 GLUD2P49448 558 aa7.1□□□□□ -1.27
CD44-204ENST00000279452 NDUFV1P49821 464 aa7.1□□□□□ -1.27
CD44-204ENST00000279452 CLCNKBP51801 687 aa7.1□□□□□ -1.27
CD44-204ENST00000279452 ERVFC1P60507 584 aa7.1□□□□□ -1.27
CD44-204ENST00000279452 TFAMQ00059 246 aaKnown RBP7.1□□□□□ -1.27
CD44-204ENST00000279452 DSC1Q08554 894 aa7.1□□□□□ -1.27
CD44-204ENST00000279452 DPYDQ12882 1025 aa7.1□□□□□ -1.27
CD44-204ENST00000279452 STK4Q13043 487 aa7.1□□□□□ -1.27
CD44-204ENST00000279452 PSMD2Q13200 908 aa7.1□□□□□ -1.27
CD44-204ENST00000279452 SNW1Q13573 536 aaKnown RBP7.1□□□□□ -1.27
CD44-204ENST00000279452 TMEM132DQ14C87 1099 aa7.1□□□□□ -1.27
CD44-204ENST00000279452 ENOX2Q16206 610 aaKnown RBP7.1□□□□□ -1.27
CD44-204ENST00000279452 CAMK4Q16566 473 aa7.1□□□□□ -1.27
CD44-204ENST00000279452 KNOP1Q1ED39 458 aaKnown RBP7.1□□□□□ -1.27
CD44-204ENST00000279452 SLC10A6Q3KNW5 377 aa7.1□□□□□ -1.27
CD44-204ENST00000279452 ISM2Q6H9L7 571 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms