RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 SLC11A1P49279 550 aa13.9□□□□□ -0.19
SS18-202ENST00000269138 CYP2J2P51589 502 aa13.9□□□□□ -0.19
SS18-202ENST00000269138 WNT7BP56706 349 aa13.9□□□□□ -0.19
SS18-202ENST00000269138 BCAR1P56945 870 aa13.9□□□□□ -0.19
SS18-202ENST00000269138 DSC1Q08554 894 aa13.9□□□□□ -0.19
SS18-202ENST00000269138 NAB2Q15742 525 aa13.9□□□□□ -0.19
SS18-202ENST00000269138 KCNT2Q6UVM3 1135 aa13.9□□□□□ -0.19
SS18-202ENST00000269138 HS2ST1Q7LGA3 356 aa13.9□□□□□ -0.19
SS18-202ENST00000269138 COLGALT2Q8IYK4 626 aa13.9□□□□□ -0.19
SS18-202ENST00000269138 DEFB123Q8N688 67 aa13.9□□□□□ -0.19
SS18-202ENST00000269138 FBXO22Q8NEZ5 403 aa13.9□□□□□ -0.19
SS18-202ENST00000269138 RABGGTAQ92696 567 aa13.9□□□□□ -0.19
SS18-202ENST00000269138 FAM212AQ96EL1 285 aa13.9□□□□□ -0.19
SS18-202ENST00000269138 FAM193BQ96PV7 902 aaPredicted RBP13.9□□□□□ -0.19
SS18-202ENST00000269138 PPP1R10Q96QC0 940 aaKnown RBP13.9□□□□□ -0.19
SS18-202ENST00000269138 RPF1Q9H9Y2 349 aaKnown RBP13.9□□□□□ -0.19
SS18-202ENST00000269138 TOPORSQ9NS56 1045 aaPredicted RBP13.9□□□□□ -0.19
SS18-202ENST00000269138 EXTL3O43909 919 aa13.89□□□□□ -0.19
SS18-202ENST00000269138 THP07101 528 aa13.89□□□□□ -0.19
SS18-202ENST00000269138 GALTP07902 379 aa13.89□□□□□ -0.19
SS18-202ENST00000269138 LAG3P18627 525 aa13.89□□□□□ -0.19
SS18-202ENST00000269138 GRIK3Q13003 919 aa13.89□□□□□ -0.19
SS18-202ENST00000269138 KYAT1Q16773 422 aa13.89□□□□□ -0.19
SS18-202ENST00000269138 TMEM173Q86WV6 379 aaPredicted RBP13.89□□□□□ -0.19
SS18-202ENST00000269138 CBWD2Q8IUF1 395 aa13.89□□□□□ -0.19
SS18-202ENST00000269138 KLHL23Q8NBE8 558 aa13.89□□□□□ -0.19
SS18-202ENST00000269138 GDPD5Q8WTR4 605 aa13.89□□□□□ -0.19
SS18-202ENST00000269138 RSPH1Q8WYR4 309 aa13.89□□□□□ -0.19
SS18-202ENST00000269138 C18orf25Q96B23 403 aaPredicted RBP13.89□□□□□ -0.19
SS18-202ENST00000269138 ZNF558Q96NG5 402 aa13.89□□□□□ -0.19
SS18-202ENST00000269138 SAMD11Q96NU1 681 aa13.89□□□□□ -0.19
SS18-202ENST00000269138 CNTN3Q9P232 1028 aa13.89□□□□□ -0.19
SS18-202ENST00000269138 CHD7Q9P2D1 2997 aa13.88□□□□□ -0.19
SS18-202ENST00000269138 CASTOR2A6NHX0 329 aa13.88□□□□□ -0.19
SS18-202ENST00000269138 PPP1R3GB7ZBB8 358 aa13.88□□□□□ -0.19
SS18-202ENST00000269138 C5orf67F2Z3F1 127 aa13.88□□□□□ -0.19
SS18-202ENST00000269138 F8W810 466 aa13.88□□□□□ -0.19
SS18-202ENST00000269138 TULP1O00294 542 aaPredicted RBP13.88□□□□□ -0.19
SS18-202ENST00000269138 PDXKO00764 312 aa13.88□□□□□ -0.19
SS18-202ENST00000269138 MBD3O95983 291 aa13.88□□□□□ -0.19
SS18-202ENST00000269138 ADRB2P07550 413 aa13.88□□□□□ -0.19
SS18-202ENST00000269138 KCNE1P15382 129 aa13.88□□□□□ -0.19
SS18-202ENST00000269138 IGFBP6P24592 240 aaPredicted RBP13.88□□□□□ -0.19
SS18-202ENST00000269138 SNRPFP62306 86 aaKnown RBP13.88□□□□□ -0.19
SS18-202ENST00000269138 SOX4Q06945 474 aaPredicted RBP13.88□□□□□ -0.19
SS18-202ENST00000269138 GPM6BQ13491 265 aa13.88□□□□□ -0.19
SS18-202ENST00000269138 C12orf56Q8IXR9 622 aa13.88□□□□□ -0.19
SS18-202ENST00000269138 ADSSL1Q8N142 457 aa13.88□□□□□ -0.19
SS18-202ENST00000269138 SLC39A11Q8N1S5 342 aa13.88□□□□□ -0.19
SS18-202ENST00000269138 GPD1LQ8N335 351 aa13.88□□□□□ -0.19
SS18-202ENST00000269138 RDH13Q8NBN7 331 aa13.88□□□□□ -0.19
SS18-202ENST00000269138 BCL7CQ8WUZ0 217 aaPredicted RBP13.88□□□□□ -0.19
SS18-202ENST00000269138 PAAF1Q9BRP4 392 aa13.88□□□□□ -0.19
SS18-202ENST00000269138 PLEKHA5Q9HAU0 1116 aa13.88□□□□□ -0.19
SS18-202ENST00000269138 GOLGA2P5Q9HBQ8 144 aa13.88□□□□□ -0.19
SS18-202ENST00000269138 ALG13Q9NP73 1137 aaKnown RBP13.88□□□□□ -0.19
SS18-202ENST00000269138 AAASQ9NRG9 546 aa13.88□□□□□ -0.19
SS18-202ENST00000269138 DMAC2Q9NW81 257 aa13.88□□□□□ -0.19
SS18-202ENST00000269138 MTMR10Q9NXD2 777 aa13.88□□□□□ -0.19
SS18-202ENST00000269138 PRG3Q9Y2Y8 225 aaPredicted RBP13.88□□□□□ -0.19
SS18-202ENST00000269138 RWDD3Q9Y3V2 267 aa13.88□□□□□ -0.19
SS18-202ENST00000269138 PCDHB12Q9Y5F1 795 aa13.88□□□□□ -0.19
SS18-202ENST00000269138 H3BNC9 293 aa13.87□□□□□ -0.19
SS18-202ENST00000269138 NRP1O14786 923 aa13.87□□□□□ -0.19
SS18-202ENST00000269138 GRM6O15303 877 aa13.87□□□□□ -0.19
SS18-202ENST00000269138 LPXNO60711 386 aa13.87□□□□□ -0.19
SS18-202ENST00000269138 KIF20AO95235 890 aa13.87□□□□□ -0.19
SS18-202ENST00000269138 LDHAP00338 332 aaKnown RBP13.87□□□□□ -0.19
SS18-202ENST00000269138 NR3C1P04150 777 aa13.87□□□□□ -0.19
SS18-202ENST00000269138 ALDH2P05091 517 aa13.87□□□□□ -0.19
SS18-202ENST00000269138 ITGB1P05556 798 aa13.87□□□□□ -0.19
SS18-202ENST00000269138 RB1P06400 928 aa13.87□□□□□ -0.19
SS18-202ENST00000269138 OR1G1P47890 313 aa13.87□□□□□ -0.19
SS18-202ENST00000269138 ALDH7A1P49419 539 aaKnown RBP13.87□□□□□ -0.19
SS18-202ENST00000269138 GUCY2FP51841 1108 aa13.87□□□□□ -0.19
SS18-202ENST00000269138 PMS1P54277 932 aaKnown RBP13.87□□□□□ -0.19
SS18-202ENST00000269138 PPP2R3AQ06190 1150 aa13.87□□□□□ -0.19
SS18-202ENST00000269138 ADGRE1Q14246 886 aa13.87□□□□□ -0.19
SS18-202ENST00000269138 ZCWPW2Q504Y3 356 aa13.87□□□□□ -0.19
SS18-202ENST00000269138 COBLL1Q53SF7 1204 aa13.87□□□□□ -0.19
SS18-202ENST00000269138 JADE1Q6IE81 842 aa13.87□□□□□ -0.19
SS18-202ENST00000269138 BRSK2Q8IWQ3 736 aa13.87□□□□□ -0.19
SS18-202ENST00000269138 GOLGA5Q8TBA6 731 aa13.87□□□□□ -0.19
SS18-202ENST00000269138 KIF12Q96FN5 646 aa13.87□□□□□ -0.19
SS18-202ENST00000269138 FAM84AQ96KN4 292 aa13.87□□□□□ -0.19
SS18-202ENST00000269138 FBXL18Q96ME1 805 aa13.87□□□□□ -0.19
SS18-202ENST00000269138 GUCD1Q96NT3 240 aa13.87□□□□□ -0.19
SS18-202ENST00000269138 CDX2Q99626 313 aaPredicted RBP13.87□□□□□ -0.19
SS18-202ENST00000269138 PLVAPQ9BX97 442 aa13.87□□□□□ -0.19
SS18-202ENST00000269138 SPG21Q9NZD8 308 aa13.87□□□□□ -0.19
SS18-202ENST00000269138 CGNQ9P2M7 1197 aaKnown RBP13.87□□□□□ -0.19
SS18-202ENST00000269138 TRAF3IP3Q9Y228 551 aa13.87□□□□□ -0.19
SS18-202ENST00000269138 FAN1Q9Y2M0 1017 aa13.87□□□□□ -0.19
SS18-202ENST00000269138 KIAA0391O15091 583 aaKnown RBP13.86□□□□□ -0.19
SS18-202ENST00000269138 CALUO43852 315 aaPredicted RBP13.86□□□□□ -0.19
SS18-202ENST00000269138 FGF18O76093 207 aa13.86□□□□□ -0.19
SS18-202ENST00000269138 NFICP08651 508 aa13.86□□□□□ -0.19
SS18-202ENST00000269138 DNAJB1P25685 340 aa13.86□□□□□ -0.19
SS18-202ENST00000269138 CASP4P49662 377 aa13.86□□□□□ -0.19
SS18-202ENST00000269138 TUSC3Q13454 348 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms