RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 PPP1R12AO14974 1030 aaPredicted RBP12.28□□□□□ -0.44
CLSTN3-201ENST00000266546 QARSP47897 775 aaKnown RBP12.28□□□□□ -0.44
CLSTN3-201ENST00000266546 NPY5RQ15761 445 aa12.28□□□□□ -0.44
CLSTN3-201ENST00000266546 MTMR9Q96QG7 549 aa12.28□□□□□ -0.44
CLSTN3-201ENST00000266546 KDM4CQ9H3R0 1056 aa12.28□□□□□ -0.44
CLSTN3-201ENST00000266546 TMEM206Q9H813 350 aa12.28□□□□□ -0.44
CLSTN3-201ENST00000266546 ELP3Q9H9T3 547 aa12.28□□□□□ -0.44
CLSTN3-201ENST00000266546 ZFP69BQ9UJL9 534 aa12.28□□□□□ -0.44
CLSTN3-201ENST00000266546 A0A0G2JND7 137 aa12.28□□□□□ -0.44
CLSTN3-201ENST00000266546 DSG3P32926 999 aa12.28□□□□□ -0.44
CLSTN3-201ENST00000266546 MXI1P50539 228 aa12.28□□□□□ -0.44
CLSTN3-201ENST00000266546 SLC8A3P57103 927 aa12.28□□□□□ -0.44
CLSTN3-201ENST00000266546 SNAPC2Q13487 334 aa12.28□□□□□ -0.44
CLSTN3-201ENST00000266546 BAATQ14032 418 aaPredicted RBP12.28□□□□□ -0.44
CLSTN3-201ENST00000266546 PRAMEF18Q5VWM3 479 aa12.28□□□□□ -0.44
CLSTN3-201ENST00000266546 KCNV1Q6PIU1 500 aa12.28□□□□□ -0.44
CLSTN3-201ENST00000266546 JAMLQ86YT9 394 aa12.28□□□□□ -0.44
CLSTN3-201ENST00000266546 CDAN1Q8IWY9 1227 aa12.28□□□□□ -0.44
CLSTN3-201ENST00000266546 ANGPTL2Q9UKU9 493 aa12.28□□□□□ -0.44
CLSTN3-201ENST00000266546 CASZ1Q86V15 1759 aa12.28□□□□□ -0.44
CLSTN3-201ENST00000266546 FTLP02792 175 aaPredicted RBP12.27□□□□□ -0.44
CLSTN3-201ENST00000266546 INHBAP08476 426 aa12.27□□□□□ -0.44
CLSTN3-201ENST00000266546 SLC9A1P19634 815 aa12.27□□□□□ -0.44
CLSTN3-201ENST00000266546 SERPINB6P35237 376 aa12.27□□□□□ -0.44
CLSTN3-201ENST00000266546 PBX1P40424 430 aa12.27□□□□□ -0.44
CLSTN3-201ENST00000266546 CDR2Q01850 454 aa12.27□□□□□ -0.44
CLSTN3-201ENST00000266546 MAP7D1Q3KQU3 841 aa12.27□□□□□ -0.44
CLSTN3-201ENST00000266546 MAP3K21Q5TCX8 1036 aa12.27□□□□□ -0.44
CLSTN3-201ENST00000266546 FRMD5Q7Z6J6 570 aa12.27□□□□□ -0.44
CLSTN3-201ENST00000266546 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.27□□□□□ -0.44
CLSTN3-201ENST00000266546 COG7P83436 770 aa12.27□□□□□ -0.45
CLSTN3-201ENST00000266546 WDR59Q6PJI9 974 aa12.27□□□□□ -0.45
CLSTN3-201ENST00000266546 SYT2Q8N9I0 419 aaPredicted RBP12.27□□□□□ -0.45
CLSTN3-201ENST00000266546 SLC35G2Q8TBE7 412 aa12.27□□□□□ -0.45
CLSTN3-201ENST00000266546 DYDC2Q96IM9 177 aa12.27□□□□□ -0.45
CLSTN3-201ENST00000266546 PABPC3Q9H361 631 aaKnown RBP12.27□□□□□ -0.45
CLSTN3-201ENST00000266546 SLX4Q8IY92 1834 aa12.27□□□□□ -0.45
CLSTN3-201ENST00000266546 SGK1O00141 431 aa12.27□□□□□ -0.45
CLSTN3-201ENST00000266546 ANXA13P27216 316 aa12.27□□□□□ -0.45
CLSTN3-201ENST00000266546 PSMC5P62195 406 aa12.27□□□□□ -0.45
CLSTN3-201ENST00000266546 NR1H3Q13133 447 aa12.27□□□□□ -0.45
CLSTN3-201ENST00000266546 LONRF1Q17RB8 773 aa12.27□□□□□ -0.45
CLSTN3-201ENST00000266546 CENPPQ6IPU0 288 aa12.27□□□□□ -0.45
CLSTN3-201ENST00000266546 GPRASP2Q96D09 838 aa12.27□□□□□ -0.45
CLSTN3-201ENST00000266546 SYT17Q9BSW7 474 aa12.27□□□□□ -0.45
CLSTN3-201ENST00000266546 SLC38A10Q9HBR0 1119 aa12.27□□□□□ -0.45
CLSTN3-201ENST00000266546 SCAF8Q9UPN6 1271 aaKnown RBP12.27□□□□□ -0.45
CLSTN3-201ENST00000266546 MYO5AQ9Y4I1 1855 aaKnown RBP12.27□□□□□ -0.45
CLSTN3-201ENST00000266546 ZNF541Q9H0D2 1346 aa12.27□□□□□ -0.45
CLSTN3-201ENST00000266546 TMEM120BA0PK00 339 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 RNF225M0QZC1 329 aaPredicted RBP12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 MSH4O15457 936 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 SOX5P35711 763 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 CAV1Q03135 178 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 PPATQ06203 517 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 KLC1Q07866 573 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 GRB10Q13322 594 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 NAIF1Q69YI7 327 aaPredicted RBP12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 TRIM59Q8IWR1 403 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 PACSIN1Q9BY11 444 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 TRIM55Q9BYV6 548 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 SAYSD1Q9NPB0 183 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 SUCLA2Q9P2R7 463 aaPredicted RBP12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 REXO2Q9Y3B8 237 aaKnown RBP12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 RCCD1A6NED2 376 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 ZNF233A6NK53 670 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 ATP6V1G2O95670 118 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 MT-ND3P03897 115 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 NR3C2P08235 984 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 PLS3P13797 630 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 YWHAGP61981 247 aaKnown RBP eCLIP12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 RPS6P62753 249 aaKnown RBP12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 DMP1Q13316 513 aaPredicted RBP12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 PREPLQ4J6C6 727 aaPredicted RBP12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 ZNF746Q6NUN9 644 aaPredicted RBP12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 C4orf32Q8N8J7 132 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 TRIM11Q96F44 468 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 Q9H521 79 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 DCTN4Q9UJW0 460 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 NAGPAQ9UK23 515 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 MEIS2O14770 477 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 CAND2O75155 1236 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 GSTA1P08263 222 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 NQO1P15559 274 aaKnown RBP12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 PAX7P23759 505 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 COPS2P61201 443 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 SEPT6Q14141 434 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 ITIH4Q14624 930 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 MEI1Q5TIA1 1274 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 SPATA20Q8TB22 786 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 GLG1Q92896 1179 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 FAM129AQ9BZQ8 928 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 DNAI2Q9GZS0 605 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 SEMA6BQ9H3T3 888 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 NOL3O60936 208 aaKnown RBP12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 SKAP2O75563 359 aaPredicted RBP12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 GGPS1O95749 300 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 CD19P15391 556 aa12.26□□□□□ -0.45
CLSTN3-201ENST00000266546 HSP90AA5PQ58FG0 334 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms