RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 SPDYE2BA6NHP3 402 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 SPDYE6P0CI01 402 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 GNAT1P11488 350 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 LSP1P33241 339 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 AP2B1P63010 937 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 PDCD2Q16342 344 aaPredicted RBP11.38□□□□□ -0.59
CD44-201ENST00000263398 STRIP1Q5VSL9 837 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 ITPRIPL1Q6GPH6 555 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 CLEC10AQ8IUN9 316 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 CCNYL1Q8N7R7 359 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 ARHGEF28Q8N1W1 1705 aaKnown RBP11.38□□□□□ -0.59
CD44-201ENST00000263398 EIF3DO15371 548 aaKnown RBP eCLIP11.38□□□□□ -0.59
CD44-201ENST00000263398 HNRNPCL1O60812 293 aaKnown RBP11.38□□□□□ -0.59
CD44-201ENST00000263398 NTSR2O95665 410 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 EIF3EP60228 445 aaKnown RBP11.38□□□□□ -0.59
CD44-201ENST00000263398 YWHAHQ04917 246 aaPredicted RBP11.38□□□□□ -0.59
CD44-201ENST00000263398 EFHC2Q5JST6 749 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 LMBRD2Q68DH5 695 aaPredicted RBP11.38□□□□□ -0.59
CD44-201ENST00000263398 JAMLQ86YT9 394 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 SLC30A5Q8TAD4 765 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 EXT2Q93063 718 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 KAZALD1Q96I82 304 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 XPO6Q96QU8 1125 aaKnown RBP11.38□□□□□ -0.59
CD44-201ENST00000263398 ISCUQ9H1K1 167 aa11.38□□□□□ -0.59
CD44-201ENST00000263398 CREB3O43889 395 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 ENTPD3O75355 529 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 MYBP10242 640 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 CHN1P15882 459 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 ACTR2P61160 394 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 SNRNP35Q16560 246 aaKnown RBP11.37□□□□□ -0.59
CD44-201ENST00000263398 TEDDM1Q5T9Z0 273 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 HHIPL2Q6UWX4 724 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 LRRC31Q6UY01 552 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 THEM5Q8N1Q8 247 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 ALKBH8Q96BT7 664 aaKnown RBP11.37□□□□□ -0.59
CD44-201ENST00000263398 ZIM3Q96PE6 472 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 ZBTB18Q99592 522 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 ERP44Q9BS26 406 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 PPCSQ9HAB8 311 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 KRT82Q9NSB4 513 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 GTSE1Q9NYZ3 720 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 INPP5FQ9Y2H2 1132 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 P4HA2O15460 535 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 RAD23BP54727 409 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 WDR72Q3MJ13 1102 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 KLHDC7AQ5VTJ3 777 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 DAGLBQ8NCG7 672 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 C9orf72Q96LT7 481 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 NDE1Q9NXR1 346 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 PRR12Q9ULL5 1215 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 USP15Q9Y4E8 981 aaPredicted RBP11.37□□□□□ -0.59
CD44-201ENST00000263398 PCDHB2Q9Y5E7 798 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 ALG6Q9Y672 507 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 F8W8V4 182 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 STAT5BP51692 787 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 TTC8Q8TAM2 541 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 KCNV2Q8TDN2 545 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 LPAR1Q92633 364 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 JMJD4Q9H9V9 463 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 SMARCAL1Q9NZC9 954 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 SUCLA2Q9P2R7 463 aaPredicted RBP11.37□□□□□ -0.59
CD44-201ENST00000263398 SPATA31D1Q6ZQQ2 1576 aa11.37□□□□□ -0.59
CD44-201ENST00000263398 A8MXQ7 604 aa11.36□□□□□ -0.59
CD44-201ENST00000263398 H3BRJ5 948 aa11.36□□□□□ -0.59
CD44-201ENST00000263398 ZNF189O75820 626 aaPredicted RBP11.36□□□□□ -0.59
CD44-201ENST00000263398 KYAT1Q16773 422 aa11.36□□□□□ -0.59
CD44-201ENST00000263398 SLC10A5Q5PT55 438 aa11.36□□□□□ -0.59
CD44-201ENST00000263398 ANO5Q75V66 913 aa11.36□□□□□ -0.59
CD44-201ENST00000263398 RNF149Q8NC42 400 aa11.36□□□□□ -0.59
CD44-201ENST00000263398 RIT2Q99578 217 aa11.36□□□□□ -0.59
CD44-201ENST00000263398 PRMT1Q99873 361 aaKnown RBP11.36□□□□□ -0.59
CD44-201ENST00000263398 SENP7Q9BQF6 1050 aa11.36□□□□□ -0.59
CD44-201ENST00000263398 ROPN1BQ9BZX4 212 aaPredicted RBP11.36□□□□□ -0.59
CD44-201ENST00000263398 CARD9Q9H257 536 aa11.36□□□□□ -0.59
CD44-201ENST00000263398 ROPN1Q9HAT0 212 aaPredicted RBP11.36□□□□□ -0.59
CD44-201ENST00000263398 ANLNQ9NQW6 1124 aa11.36□□□□□ -0.59
CD44-201ENST00000263398 SALL3Q9BXA9 1300 aa11.36□□□□□ -0.59
CD44-201ENST00000263398 TRAPPC11Q7Z392 1133 aa11.36□□□□□ -0.59
CD44-201ENST00000263398 LCA5Q86VQ0 697 aa11.36□□□□□ -0.59
CD44-201ENST00000263398 SH2D3AQ9BRG2 576 aa11.36□□□□□ -0.59
CD44-201ENST00000263398 CCDC195A0A1B0GUA6 201 aa11.36□□□□□ -0.59
CD44-201ENST00000263398 KLK7P49862 253 aa11.36□□□□□ -0.59
CD44-201ENST00000263398 ARHGEF6Q15052 776 aa11.36□□□□□ -0.59
CD44-201ENST00000263398 FIGNQ5HY92 759 aa11.36□□□□□ -0.59
CD44-201ENST00000263398 APOBEC3FQ8IUX4 373 aaKnown RBP11.36□□□□□ -0.59
CD44-201ENST00000263398 OSBPL8Q9BZF1 889 aa11.36□□□□□ -0.59
CD44-201ENST00000263398 ZFATQ9P243 1243 aa11.36□□□□□ -0.59
CD44-201ENST00000263398 GPR75-ASB3A0A0A6YYF3 556 aa11.36□□□□□ -0.59
CD44-201ENST00000263398 PDHA1P08559 390 aa11.36□□□□□ -0.59
CD44-201ENST00000263398 COMTP21964 271 aa11.36□□□□□ -0.59
CD44-201ENST00000263398 PPP4CP60510 307 aa11.36□□□□□ -0.59
CD44-201ENST00000263398 PRR5LQ6MZQ0 368 aa11.36□□□□□ -0.59
CD44-201ENST00000263398 WDR93Q6P2C0 686 aa11.36□□□□□ -0.59
CD44-201ENST00000263398 PID1Q7Z2X4 250 aa11.36□□□□□ -0.59
CD44-201ENST00000263398 ZNF668Q96K58 619 aaPredicted RBP11.36□□□□□ -0.59
CD44-201ENST00000263398 ACAP3Q96P50 834 aa11.36□□□□□ -0.59
CD44-201ENST00000263398 DNAJC7Q99615 494 aa11.36□□□□□ -0.59
CD44-201ENST00000263398 RPAP3Q9H6T3 665 aaPredicted RBP11.36□□□□□ -0.59
CD44-201ENST00000263398 L3MBTL1Q9Y468 752 aa11.36□□□□□ -0.59
CD44-201ENST00000263398 PHF20L1A8MW92 1017 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms