RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 TAS1R2Q8TE23 839 aa12.4□□□□□ -0.42
VPS4A-201ENST00000254950 DNAJB3Q8WWF6 145 aa12.4□□□□□ -0.42
VPS4A-201ENST00000254950 NIFKQ9BYG3 293 aaKnown RBP12.4□□□□□ -0.42
VPS4A-201ENST00000254950 UTP11Q9Y3A2 253 aaKnown RBP12.4□□□□□ -0.42
VPS4A-201ENST00000254950 PCDHB2Q9Y5E7 798 aa12.4□□□□□ -0.42
VPS4A-201ENST00000254950 TUBGCP6Q96RT7 1819 aa12.4□□□□□ -0.42
VPS4A-201ENST00000254950 PALMO75781 387 aa12.4□□□□□ -0.42
VPS4A-201ENST00000254950 CALB1P05937 261 aa12.4□□□□□ -0.42
VPS4A-201ENST00000254950 ITGA4P13612 1032 aa12.4□□□□□ -0.42
VPS4A-201ENST00000254950 NAA35Q5VZE5 725 aa12.4□□□□□ -0.42
VPS4A-201ENST00000254950 ZNF467Q7Z7K2 595 aaPredicted RBP12.4□□□□□ -0.42
VPS4A-201ENST00000254950 PHLDB2Q86SQ0 1253 aa12.4□□□□□ -0.42
VPS4A-201ENST00000254950 RFFLQ8WZ73 363 aa12.4□□□□□ -0.42
VPS4A-201ENST00000254950 PBKQ96KB5 322 aa12.4□□□□□ -0.42
VPS4A-201ENST00000254950 CALR3Q96L12 384 aaKnown RBP12.4□□□□□ -0.42
VPS4A-201ENST00000254950 POP1Q99575 1024 aaKnown RBP12.4□□□□□ -0.42
VPS4A-201ENST00000254950 FGFBP2Q9BYJ0 223 aa12.4□□□□□ -0.42
VPS4A-201ENST00000254950 USP20Q9Y2K6 914 aa12.4□□□□□ -0.42
VPS4A-201ENST00000254950 MYH8P13535 1937 aa12.4□□□□□ -0.42
VPS4A-201ENST00000254950 COL11A2P13942 1736 aaPredicted RBP12.4□□□□□ -0.42
VPS4A-201ENST00000254950 DAPK3O43293 454 aa12.4□□□□□ -0.42
VPS4A-201ENST00000254950 TOMM70O94826 608 aa12.4□□□□□ -0.42
VPS4A-201ENST00000254950 STAG3L1P0CL83 205 aa12.4□□□□□ -0.42
VPS4A-201ENST00000254950 MCF2P10911 925 aa12.4□□□□□ -0.42
VPS4A-201ENST00000254950 ZCCHC17Q9NP64 241 aaKnown RBP12.4□□□□□ -0.42
VPS4A-201ENST00000254950 INTS13Q9NVM9 706 aa12.4□□□□□ -0.42
VPS4A-201ENST00000254950 PGAP2Q9UHJ9 254 aa12.4□□□□□ -0.42
VPS4A-201ENST00000254950 SNX9Q9Y5X1 595 aa12.4□□□□□ -0.42
VPS4A-201ENST00000254950 FRMD3A2A2Y4 597 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 GAS8O95995 478 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 CDK17Q00537 523 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 RASAL3Q86YV0 1011 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 IRF2BP1Q8IU81 584 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 ZBTB45Q96K62 511 aaPredicted RBP12.39□□□□□ -0.43
VPS4A-201ENST00000254950 DHX33Q9H6R0 707 aaKnown RBP12.39□□□□□ -0.43
VPS4A-201ENST00000254950 HMX1Q9NP08 348 aaPredicted RBP12.39□□□□□ -0.43
VPS4A-201ENST00000254950 ANAPC7Q9UJX3 599 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 CXCR5P32302 372 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 ILDR2Q71H61 639 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 WDR49Q8IV35 697 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 BRSK2Q8IWQ3 736 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 CRYGNQ8WXF5 182 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 MTMR12Q9C0I1 747 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 TMEM117Q9H0C3 514 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 STRIP2Q9ULQ0 834 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 TRIM17Q9Y577 477 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 SYNGAP1Q96PV0 1343 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 A8MXQ7 604 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 PGRMC1O00264 195 aaKnown RBP12.39□□□□□ -0.43
VPS4A-201ENST00000254950 MAPK13O15264 365 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 RTN2O75298 545 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 PAK2Q13177 524 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 PSMD6Q15008 389 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 NAB2Q15742 525 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 SEPT7Q16181 437 aaKnown RBP12.39□□□□□ -0.43
VPS4A-201ENST00000254950 CPB2Q96IY4 423 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 ST6GALNAC4Q9H4F1 302 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 SLC38A7Q9NVC3 462 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 ASIC3Q9UHC3 531 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 ATP8B3O60423 1300 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 FOXN3O00409 490 aaPredicted RBP12.39□□□□□ -0.43
VPS4A-201ENST00000254950 GPR182O15218 404 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 CRHR2Q13324 411 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 CXCL17Q6UXB2 119 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 ZNF354CQ86Y25 554 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 RABGGTAQ92696 567 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 TRIM31Q9BZY9 425 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 IFT122Q9HBG6 1241 aa12.39□□□□□ -0.43
VPS4A-201ENST00000254950 UBQLN1Q9UMX0 589 aaKnown RBP12.39□□□□□ -0.43
VPS4A-201ENST00000254950 MIF4GDA9UHW6 222 aaKnown RBP12.38□□□□□ -0.43
VPS4A-201ENST00000254950 MSCO60682 206 aa12.38□□□□□ -0.43
VPS4A-201ENST00000254950 PGK1P00558 417 aa12.38□□□□□ -0.43
VPS4A-201ENST00000254950 GALCP54803 685 aa12.38□□□□□ -0.43
VPS4A-201ENST00000254950 KRT81Q14533 505 aa12.38□□□□□ -0.43
VPS4A-201ENST00000254950 SGO2Q562F6 1265 aa12.38□□□□□ -0.43
VPS4A-201ENST00000254950 KIAA1841Q6NSI8 718 aa12.38□□□□□ -0.43
VPS4A-201ENST00000254950 TRAPPC11Q7Z392 1133 aa12.38□□□□□ -0.43
VPS4A-201ENST00000254950 C12orf56Q8IXR9 622 aa12.38□□□□□ -0.43
VPS4A-201ENST00000254950 STARD7Q9NQZ5 370 aa12.38□□□□□ -0.43
VPS4A-201ENST00000254950 WRAP73Q9P2S5 460 aaPredicted RBP12.38□□□□□ -0.43
VPS4A-201ENST00000254950 SCN9AQ15858 1988 aa12.38□□□□□ -0.43
VPS4A-201ENST00000254950 SMIM10L2AP0DMW4 78 aa12.38□□□□□ -0.43
VPS4A-201ENST00000254950 SMIM10L2BP0DMW5 78 aa12.38□□□□□ -0.43
VPS4A-201ENST00000254950 CUL2Q13617 745 aa12.38□□□□□ -0.43
VPS4A-201ENST00000254950 MIIPQ5JXC2 388 aa12.38□□□□□ -0.43
VPS4A-201ENST00000254950 ZNF771Q7L3S4 317 aaPredicted RBP12.38□□□□□ -0.43
VPS4A-201ENST00000254950 ADAT2Q7Z6V5 191 aaKnown RBP12.38□□□□□ -0.43
VPS4A-201ENST00000254950 TTC16Q8NEE8 873 aa12.38□□□□□ -0.43
VPS4A-201ENST00000254950 HPDLQ96IR7 371 aa12.38□□□□□ -0.43
VPS4A-201ENST00000254950 IRX2Q9BZI1 471 aaPredicted RBP12.38□□□□□ -0.43
VPS4A-201ENST00000254950 NACA2Q9H009 215 aa12.38□□□□□ -0.43
VPS4A-201ENST00000254950 RAB17Q9H0T7 212 aa12.38□□□□□ -0.43
VPS4A-201ENST00000254950 STIM2Q9P246 746 aa12.38□□□□□ -0.43
VPS4A-201ENST00000254950 SIK3Q9Y2K2 1263 aa12.38□□□□□ -0.43
VPS4A-201ENST00000254950 M0QYV0 167 aa12.38□□□□□ -0.43
VPS4A-201ENST00000254950 ITGB3P05106 788 aa12.38□□□□□ -0.43
VPS4A-201ENST00000254950 MMP3P08254 477 aa12.38□□□□□ -0.43
VPS4A-201ENST00000254950 PLEKP08567 350 aaPredicted RBP12.38□□□□□ -0.43
VPS4A-201ENST00000254950 PNMA6AP0CW24 399 aaPredicted RBP12.38□□□□□ -0.43
VPS4A-201ENST00000254950 MYBL1P10243 752 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms