RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 ARHGAP42A6NI28 874 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 TADA2AO75478 443 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 PECAM1P16284 738 aaPredicted RBP13.5□□□□□ -0.25
USP40-201ENST00000251722 ST8SIA6P61647 398 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 PSMC1P62191 440 aaKnown RBP13.5□□□□□ -0.25
USP40-201ENST00000251722 ITPK1Q13572 414 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 FBXW10Q5XX13 1052 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 EMBQ6PCB8 327 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 MGARPQ8TDB4 240 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 RHBDL2Q9NX52 303 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 TJP2Q9UDY2 1190 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 SYNPO2Q9UMS6 1093 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 MANSC4A6NHS7 340 aaPredicted RBP13.5□□□□□ -0.25
USP40-201ENST00000251722 STK25O00506 426 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 MTA1Q13330 715 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 TMEM132DQ14C87 1099 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 SPOPLQ6IQ16 392 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 PLEKHH3Q7Z736 793 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 CFAP61Q8NHU2 1237 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 GIPC2Q8TF65 315 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 HSPH1Q92598 858 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 HIC2Q96JB3 615 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 C7orf25Q9BPX7 421 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 FAM167BQ9BTA0 163 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 NEMP1O14524 444 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 ICAM1P05362 532 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 C6orf222P0C671 652 aaPredicted RBP13.5□□□□□ -0.25
USP40-201ENST00000251722 GCLMP48507 274 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 C4orf22Q6V702 233 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 FRA10AC1Q70Z53 315 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 FAM83AQ86UY5 434 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 ARL10Q8N8L6 244 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 TBC1D23Q9NUY8 699 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 TMEM260Q9NX78 707 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 ARHGAP23Q9P227 1491 aa13.5□□□□□ -0.25
USP40-201ENST00000251722 SMAPO00193 183 aa13.49□□□□□ -0.25
USP40-201ENST00000251722 DYNC1LI2O43237 492 aaPredicted RBP13.49□□□□□ -0.25
USP40-201ENST00000251722 GRAMD1CQ8IYS0 662 aa13.49□□□□□ -0.25
USP40-201ENST00000251722 KRT35Q92764 455 aa13.49□□□□□ -0.25
USP40-201ENST00000251722 FGFR1OP2Q9NVK5 253 aa13.49□□□□□ -0.25
USP40-201ENST00000251722 FAM196BA6NMK8 535 aa13.49□□□□□ -0.25
USP40-201ENST00000251722 EDRF1Q3B7T1 1238 aa13.49□□□□□ -0.25
USP40-201ENST00000251722 NOTUMQ6P988 496 aa13.49□□□□□ -0.25
USP40-201ENST00000251722 FAM81AQ8TBF8 368 aa13.49□□□□□ -0.25
USP40-201ENST00000251722 COLEC11Q9BWP8 271 aa13.49□□□□□ -0.25
USP40-201ENST00000251722 PRDM5Q9NQX1 630 aaPredicted RBP13.49□□□□□ -0.25
USP40-201ENST00000251722 SPDYE2BA6NHP3 402 aa13.49□□□□□ -0.25
USP40-201ENST00000251722 SPDYE6P0CI01 402 aa13.49□□□□□ -0.25
USP40-201ENST00000251722 ATICP31939 592 aa13.49□□□□□ -0.25
USP40-201ENST00000251722 DYNLT1P63172 113 aa13.49□□□□□ -0.25
USP40-201ENST00000251722 EMC2Q15006 297 aa13.49□□□□□ -0.25
USP40-201ENST00000251722 ZC3H18Q86VM9 953 aaKnown RBP13.49□□□□□ -0.25
USP40-201ENST00000251722 ZNF677Q86XU0 584 aa13.49□□□□□ -0.25
USP40-201ENST00000251722 GPIHBP1Q8IV16 184 aa13.49□□□□□ -0.25
USP40-201ENST00000251722 SERPINI1Q99574 410 aa13.49□□□□□ -0.25
USP40-201ENST00000251722 POLR3CQ9BUI4 534 aaPredicted RBP13.49□□□□□ -0.25
USP40-201ENST00000251722 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.49□□□□□ -0.25
USP40-201ENST00000251722 IGSF9BQ9UPX0 1349 aa13.49□□□□□ -0.25
USP40-201ENST00000251722 EXOC1LA0A1B0GW35 172 aa13.49□□□□□ -0.25
USP40-201ENST00000251722 TARSL2A2RTX5 802 aaKnown RBP13.49□□□□□ -0.25
USP40-201ENST00000251722 POTEFA5A3E0 1075 aa13.49□□□□□ -0.25
USP40-201ENST00000251722 COBLO75128 1261 aa13.49□□□□□ -0.25
USP40-201ENST00000251722 POTEIP0CG38 1075 aa13.49□□□□□ -0.25
USP40-201ENST00000251722 MX2P20592 715 aa13.49□□□□□ -0.25
USP40-201ENST00000251722 POTEGQ6S5H5 508 aa13.49□□□□□ -0.25
USP40-201ENST00000251722 POTEEQ6S8J3 1075 aa13.49□□□□□ -0.25
USP40-201ENST00000251722 TEKT4Q8WW24 435 aa13.49□□□□□ -0.25
USP40-201ENST00000251722 THOC1Q96FV9 657 aaKnown RBP13.49□□□□□ -0.25
USP40-201ENST00000251722 FMO2Q99518 471 aa13.49□□□□□ -0.25
USP40-201ENST00000251722 SALL1Q9NSC2 1324 aa13.49□□□□□ -0.25
USP40-201ENST00000251722 C17orf102A2RUQ5 167 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 FAM187AA6NFU0 413 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 SNX2O60749 519 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 HEATR6Q6AI08 1181 aaKnown RBP13.48□□□□□ -0.25
USP40-201ENST00000251722 ANKRD13CQ8N6S4 541 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 TTC8Q8TAM2 541 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 TNS2Q63HR2 1409 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 GPR182O15218 404 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 RASA1P20936 1047 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 SEPT8Q92599 483 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 AIFM3Q96NN9 605 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 ANKRD27Q96NW4 1050 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 NFU1Q9UMS0 254 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 SLIT1O75093 1534 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 ZMYM2Q9UBW7 1377 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 DCDC2CA8MYV0 355 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 NMT2O60551 498 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 CDC25AP30304 524 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 CHRNA3P32297 505 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 PLTPP55058 493 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 NUDCD3Q8IVD9 361 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 GMCL1P1Q8NEA9 526 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 OLFML3Q9NRN5 406 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 MST1RQ04912 1400 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 CXCL11O14625 94 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 EGFRP00533 1210 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 PAX7P23759 505 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 ZNF564Q8TBZ8 553 aaPredicted RBP13.48□□□□□ -0.25
USP40-201ENST00000251722 EPB41L5Q9HCM4 733 aa13.48□□□□□ -0.25
USP40-201ENST00000251722 SMYD2Q9NRG4 433 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms