RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 ACBD3Q9H3P7 528 aa19.85■□□□□ 0.77
CLN3-263ENST00000637871 PCIF1Q9H4Z3 704 aa19.85■□□□□ 0.77
CLN3-263ENST00000637871 GPRC5CQ9NQ84 441 aa19.85■□□□□ 0.77
CLN3-263ENST00000637871 PAK6Q9NQU5 681 aaPredicted RBP19.85■□□□□ 0.77
CLN3-263ENST00000637871 ARHGAP28Q9P2N2 729 aa19.85■□□□□ 0.77
CLN3-263ENST00000637871 SALL4Q9UJQ4 1053 aa19.85■□□□□ 0.77
CLN3-263ENST00000637871 MYADML2A6NDP7 307 aa19.84■□□□□ 0.77
CLN3-263ENST00000637871 SRGAP2O75044 1071 aa19.84■□□□□ 0.77
CLN3-263ENST00000637871 PALMO75781 387 aa19.84■□□□□ 0.77
CLN3-263ENST00000637871 GGPS1O95749 300 aa19.84■□□□□ 0.77
CLN3-263ENST00000637871 PGK1P00558 417 aa19.84■□□□□ 0.77
CLN3-263ENST00000637871 OATP04181 439 aa19.84■□□□□ 0.77
CLN3-263ENST00000637871 MYCNP04198 464 aaPredicted RBP19.84■□□□□ 0.77
CLN3-263ENST00000637871 TNFAIP3P21580 790 aa19.84■□□□□ 0.77
CLN3-263ENST00000637871 GABPB1Q06547 395 aaPredicted RBP19.84■□□□□ 0.77
CLN3-263ENST00000637871 SNRNP35Q16560 246 aaKnown RBP19.84■□□□□ 0.77
CLN3-263ENST00000637871 DUSP28Q4G0W2 176 aa19.84■□□□□ 0.77
CLN3-263ENST00000637871 KRT39Q6A163 491 aa19.84■□□□□ 0.77
CLN3-263ENST00000637871 SLFN12LQ6IEE8 588 aa19.84■□□□□ 0.77
CLN3-263ENST00000637871 RDH13Q8NBN7 331 aa19.84■□□□□ 0.77
CLN3-263ENST00000637871 NOA1Q8NC60 698 aaKnown RBP19.84■□□□□ 0.77
CLN3-263ENST00000637871 AFAP1L1Q8TED9 768 aa19.84■□□□□ 0.77
CLN3-263ENST00000637871 TAF4BQ92750 862 aa19.84■□□□□ 0.77
CLN3-263ENST00000637871 IKZF4Q9H2S9 585 aa19.84■□□□□ 0.77
CLN3-263ENST00000637871 TMEM8AQ9HCN3 771 aa19.84■□□□□ 0.77
CLN3-263ENST00000637871 GNEQ9Y223 722 aaKnown RBP19.84■□□□□ 0.77
CLN3-263ENST00000637871 SPDYE4A6NLX3 237 aa19.84■□□□□ 0.77
CLN3-263ENST00000637871 BUB1O43683 1085 aa19.84■□□□□ 0.77
CLN3-263ENST00000637871 GAS2O43903 313 aaKnown RBP19.84■□□□□ 0.77
CLN3-263ENST00000637871 ZC3H11AO75152 810 aaKnown RBP eCLIP19.84■□□□□ 0.77
CLN3-263ENST00000637871 RHOXF2BP0C7M4 288 aa19.84■□□□□ 0.77
CLN3-263ENST00000637871 TMEM253P0C7T8 217 aa19.84■□□□□ 0.77
CLN3-263ENST00000637871 NAMPTP43490 491 aa19.84■□□□□ 0.77
CLN3-263ENST00000637871 BEND6Q5SZJ8 279 aaPredicted RBP19.84■□□□□ 0.77
CLN3-263ENST00000637871 LHX8Q68G74 356 aa19.84■□□□□ 0.77
CLN3-263ENST00000637871 IQSEC1Q6DN90 963 aa19.84■□□□□ 0.77
CLN3-263ENST00000637871 CYFIP1Q7L576 1253 aa19.84■□□□□ 0.77
CLN3-263ENST00000637871 ENOSF1Q7L5Y1 443 aa19.84■□□□□ 0.77
CLN3-263ENST00000637871 TLK2Q86UE8 772 aa19.84■□□□□ 0.77
CLN3-263ENST00000637871 GPD1LQ8N335 351 aa19.84■□□□□ 0.77
CLN3-263ENST00000637871 PARD3BQ8TEW8 1205 aa19.84■□□□□ 0.77
CLN3-263ENST00000637871 CAPZA3Q96KX2 299 aa19.84■□□□□ 0.77
CLN3-263ENST00000637871 RHOXF2Q9BQY4 288 aa19.84■□□□□ 0.77
CLN3-263ENST00000637871 SYT11Q9BT88 431 aa19.84■□□□□ 0.77
CLN3-263ENST00000637871 DHX33Q9H6R0 707 aaKnown RBP19.84■□□□□ 0.77
CLN3-263ENST00000637871 DDX3XO00571 662 aaKnown RBP eCLIP19.83■□□□□ 0.763e-8■■■□□ 15.1
CLN3-263ENST00000637871 MAP2K7O14733 419 aa19.83■□□□□ 0.76
CLN3-263ENST00000637871 LDHAP00338 332 aaKnown RBP19.83■□□□□ 0.76
CLN3-263ENST00000637871 PIGRP01833 764 aa19.83■□□□□ 0.76
CLN3-263ENST00000637871 RARBP10826 455 aa19.83■□□□□ 0.76
CLN3-263ENST00000637871 POLGP54098 1239 aaPredicted RBP19.83■□□□□ 0.76
CLN3-263ENST00000637871 MFAP3P55082 362 aa19.83■□□□□ 0.76
CLN3-263ENST00000637871 ARHGAP1Q07960 439 aa19.83■□□□□ 0.76
CLN3-263ENST00000637871 STRN3Q13033 797 aa19.83■□□□□ 0.76
CLN3-263ENST00000637871 TCEAL1Q15170 157 aa19.83■□□□□ 0.76
CLN3-263ENST00000637871 ENOX2Q16206 610 aaKnown RBP19.83■□□□□ 0.76
CLN3-263ENST00000637871 SPATA4Q8NEY3 305 aa19.83■□□□□ 0.76
CLN3-263ENST00000637871 OR6J1Q8NGC5 347 aa19.83■□□□□ 0.76
CLN3-263ENST00000637871 SEPT1Q8WYJ6 367 aa19.83■□□□□ 0.76
CLN3-263ENST00000637871 SELENOOQ9BVL4 669 aa19.83■□□□□ 0.76
CLN3-263ENST00000637871 FUT8Q9BYC5 575 aa19.83■□□□□ 0.76
CLN3-263ENST00000637871 XPNPEP1Q9NQW7 623 aa19.83■□□□□ 0.76
CLN3-263ENST00000637871 L1RE1Q9UN81 338 aa19.83■□□□□ 0.76
CLN3-263ENST00000637871 STYXL1Q9Y6J8 313 aa19.83■□□□□ 0.76
CLN3-263ENST00000637871 TMEM150BA6NC51 233 aa19.82■□□□□ 0.76
CLN3-263ENST00000637871 DYNC1LI2O43237 492 aaPredicted RBP19.82■□□□□ 0.76
CLN3-263ENST00000637871 GPC3P51654 580 aa19.82■□□□□ 0.76
CLN3-263ENST00000637871 BEX3Q00994 111 aa19.82■□□□□ 0.76
CLN3-263ENST00000637871 PPP3CAQ08209 521 aa19.82■□□□□ 0.76
CLN3-263ENST00000637871 EMC2Q15006 297 aa19.82■□□□□ 0.76
CLN3-263ENST00000637871 RPS6KA1Q15418 735 aa19.82■□□□□ 0.76
CLN3-263ENST00000637871 PHLDB3Q6NSJ2 640 aa19.82■□□□□ 0.76
CLN3-263ENST00000637871 SLC7A3Q8WY07 619 aa19.82■□□□□ 0.76
CLN3-263ENST00000637871 POMGNT1Q8WZA1 660 aa19.82■□□□□ 0.76
CLN3-263ENST00000637871 PNKPQ96T60 521 aa19.82■□□□□ 0.76
CLN3-263ENST00000637871 POLR3FQ9H1D9 316 aaPredicted RBP19.82■□□□□ 0.76
CLN3-263ENST00000637871 EPC1Q9H2F5 836 aa19.82■□□□□ 0.76
CLN3-263ENST00000637871 TMEM134Q9H6X4 195 aa19.82■□□□□ 0.76
CLN3-263ENST00000637871 UBE2TQ9NPD8 197 aaPredicted RBP19.82■□□□□ 0.76
CLN3-263ENST00000637871 XPNPEP3Q9NQH7 507 aa19.82■□□□□ 0.76
CLN3-263ENST00000637871 AJAP1Q9UKB5 411 aaPredicted RBP19.82■□□□□ 0.76
CLN3-263ENST00000637871 ZNF233A6NK53 670 aa19.81■□□□□ 0.76
CLN3-263ENST00000637871 ADSSP30520 456 aa19.81■□□□□ 0.76
CLN3-263ENST00000637871 NOP2P46087 812 aaKnown RBP19.81■□□□□ 0.76
CLN3-263ENST00000637871 CLUL1Q15846 466 aa19.81■□□□□ 0.76
CLN3-263ENST00000637871 C1orf220Q5T0J3 134 aa19.81■□□□□ 0.76
CLN3-263ENST00000637871 GJB7Q6PEY0 223 aa19.81■□□□□ 0.76
CLN3-263ENST00000637871 METTL7BQ6UX53 244 aa19.81■□□□□ 0.76
CLN3-263ENST00000637871 SLFN11Q7Z7L1 901 aa19.81■□□□□ 0.76
CLN3-263ENST00000637871 U2AF1L4Q8WU68 220 aaKnown RBP19.81■□□□□ 0.76
CLN3-263ENST00000637871 GPR88Q9GZN0 384 aa19.81■□□□□ 0.76
CLN3-263ENST00000637871 TMEM117Q9H0C3 514 aa19.81■□□□□ 0.76
CLN3-263ENST00000637871 NCANO14594 1321 aa19.81■□□□□ 0.76
CLN3-263ENST00000637871 ANKRD62A6NC57 917 aa19.8■□□□□ 0.76
CLN3-263ENST00000637871 ANKRD63C9JTQ0 380 aa19.8■□□□□ 0.76
CLN3-263ENST00000637871 PDE2AO00408 941 aaPredicted RBP19.8■□□□□ 0.76
CLN3-263ENST00000637871 EXTL3O43909 919 aa19.8■□□□□ 0.76
CLN3-263ENST00000637871 DUSP11O75319 330 aaKnown RBP19.8■□□□□ 0.76
CLN3-263ENST00000637871 FARP2O94887 1054 aaPredicted RBP19.8■□□□□ 0.76
CLN3-263ENST00000637871 GH1P01241 217 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms