RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 CLK2P49760 499 aaKnown RBP4.27□□□□□ -1.73
SCN1A-214ENST00000637038 PDE6CP51160 858 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 GALCP54803 685 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 SLC12A3P55017 1021 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 DRG2P55039 364 aaKnown RBP4.27□□□□□ -1.73
SCN1A-214ENST00000637038 FKBP1AP62942 108 aaKnown RBP4.27□□□□□ -1.73
SCN1A-214ENST00000637038 GPC5P78333 572 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 LACTBP83111 547 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-214ENST00000637038 LMNB2Q03252 620 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 ZNF844Q08AG5 666 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 FOXD4Q12950 439 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-214ENST00000637038 MKRN3Q13064 507 aaKnown RBP4.27□□□□□ -1.73
SCN1A-214ENST00000637038 GIT2Q14161 759 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 ITIH4Q14624 930 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 DRAP1Q14919 205 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-214ENST00000637038 FAM153CQ494X1 144 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 KIAA1755Q5JYT7 1200 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 LRCH2Q5VUJ6 765 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 C11orf63Q6NUN7 778 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 KCTD1Q719H9 257 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 TMC3Q7Z5M5 1100 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 TXNRD3Q86VQ6 643 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 C7orf61Q8IZ16 206 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 RPUSD2Q8IZ73 545 aaKnown RBP4.27□□□□□ -1.73
SCN1A-214ENST00000637038 CCDC63Q8NA47 563 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 CHURC1Q8WUH1 139 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 PIK3R5Q8WYR1 880 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 HAS1Q92839 578 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 ITFG2Q969R8 447 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 SEC16BQ96JE7 1060 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 SCLT1Q96NL6 688 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 ACCSQ96QU6 501 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 TEKT3Q9BXF9 490 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 BHMT2Q9H2M3 363 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 KDM4CQ9H3R0 1056 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 PI4KBQ9UBF8 816 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 APEX2Q9UBZ4 518 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 FAM153AQ9UHL3 310 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 PNMA2Q9UL42 364 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 SYNPO2Q9UMS6 1093 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 PACSIN2Q9UNF0 486 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-214ENST00000637038 IGKV6D-41A0A0C4DH26 115 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 F8VZ95 297 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 F8W031 263 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-214ENST00000637038 RASGRF2O14827 1237 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 PARNO95453 639 aaKnown RBP4.27□□□□□ -1.73
SCN1A-214ENST00000637038 ECEL1O95672 775 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 MMEP08473 750 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 SLC9A1P19634 815 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 ABCB4P21439 1286 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 ABCD1P33897 745 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 SLC16A2P36021 539 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 SREBF1P36956 1147 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 FMO5P49326 533 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 CYP2J2P51589 502 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 MFAP3P55082 362 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 RHBDL3P58872 404 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 HDLBPQ00341 1268 aaKnown RBP4.27□□□□□ -1.73
SCN1A-214ENST00000637038 KIAA0319Q5VV43 1072 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 CST9Q5W186 159 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 TRMT10CQ7L0Y3 403 aaKnown RBP4.27□□□□□ -1.73
SCN1A-214ENST00000637038 CYFIP1Q7L576 1253 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 KCNK18Q7Z418 384 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 APBB1IPQ7Z5R6 666 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-214ENST00000637038 SLFN11Q7Z7L1 901 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 CEP57Q86XR8 500 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 PARP9Q8IXQ6 854 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 LRRC57Q8N9N7 239 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 HVCN1Q96D96 273 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 PGM2Q96G03 612 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 MBOAT7Q96N66 472 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 RPS6KC1Q96S38 1066 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 TIPINQ9BVW5 301 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 PABPC3Q9H361 631 aaKnown RBP4.27□□□□□ -1.73
SCN1A-214ENST00000637038 AMACRQ9UHK6 382 aa4.27□□□□□ -1.73
SCN1A-214ENST00000637038 GSTTP1A0A1W2PQM5 241 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 TMEM110-MUSTN1A8MSY1 372 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 USP17L15C9J2P7 530 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 USP17L13C9JLJ4 530 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 USP17L11C9JVI0 530 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 USP17L18D6R9N7 530 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 USP17L22D6RA61 530 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 USP17L17D6RBQ6 530 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 USP17L19D6RCP7 530 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 USP17L20D6RJB6 530 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 TTI1O43156 1089 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 KIF1CO43896 1103 aaKnown RBP4.26□□□□□ -1.73
SCN1A-214ENST00000637038 DKC1O60832 514 aaKnown RBP eCLIP4.26□□□□□ -1.731e-7■■■■■ 34.3
SCN1A-214ENST00000637038 PPFIA2O75334 1257 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 MED24O75448 989 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 BMP3P12645 472 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 FNTAP49354 379 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 PLTPP55058 493 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 USP17L24Q0WX57 530 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 SETDB1Q15047 1291 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 DLGAP5Q15398 846 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 SKIV2LQ15477 1246 aaKnown RBP4.26□□□□□ -1.73
SCN1A-214ENST00000637038 ARHGAP44Q17R89 818 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 ODR4Q5SWX8 454 aa4.26□□□□□ -1.73
SCN1A-214ENST00000637038 FBXW10Q5XX13 1052 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms