RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 SLC27A1Q6PCB7 646 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 CENPQQ7L2Z9 268 aaPredicted RBP6.99□□□□□ -1.29
CUX1-220ENST00000607092 FERMT3Q86UX7 667 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 PJA1Q8NG27 643 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 GPR152Q8TDT2 470 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 ATRIPQ8WXE1 791 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 LXNQ9BS40 222 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 TTPALQ9BTX7 342 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 VN1R3Q9BXE9 311 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 SMOC2Q9H3U7 446 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 KCNMB3Q9NPA1 279 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 ANKEF1Q9NU02 776 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 NCDNQ9UBB6 729 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 CDH7Q9ULB5 785 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 KCNH3Q9ULD8 1083 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 CA14Q9ULX7 337 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 IPPQ9Y573 584 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 CNOT1A5YKK6 2376 aaKnown RBP6.99□□□□□ -1.29
CUX1-220ENST00000607092 FAM208BQ5VWN6 2430 aa6.99□□□□□ -1.29
CUX1-220ENST00000607092 DMXL1Q9Y485 3027 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 KANSL1LA0AUZ9 987 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 KRBA1A5PL33 1030 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 TTLL13PA6NNM8 815 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 MAN2B1O00754 1011 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 TGM5O43548 720 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 NARSO43776 548 aaKnown RBP6.98□□□□□ -1.29
CUX1-220ENST00000607092 TBC1D4O60343 1298 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 CCNT1O60563 726 aaKnown RBP6.98□□□□□ -1.29
CUX1-220ENST00000607092 TSPAN1O60635 241 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 RFPL2O75678 378 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 EFEMP2O95967 443 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 SP9P0CG40 484 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 MLH1P40692 756 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 SCNN1GP51170 649 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 TUSC3Q13454 348 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 COL9A3Q14050 684 aaPredicted RBP6.98□□□□□ -1.29
CUX1-220ENST00000607092 HSP90AA2PQ14568 343 aaPredicted RBP6.98□□□□□ -1.29
CUX1-220ENST00000607092 SPECC1Q5M775 1068 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 PPM1LQ5SGD2 360 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 UBXN11Q5T124 520 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 KANK3Q6NY19 840 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 LILRA6Q6PI73 481 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 C1orf228Q6PIY5 440 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 GET4Q7L5D6 327 aaPredicted RBP6.98□□□□□ -1.29
CUX1-220ENST00000607092 PALB2Q86YC2 1186 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 KSR1Q8IVT5 923 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 ZBTB8OSQ8IWT0 167 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 KIAA2013Q8IYS2 634 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 SMG8Q8ND04 991 aaKnown RBP6.98□□□□□ -1.29
CUX1-220ENST00000607092 MCPH1Q8NEM0 835 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 RIN2Q8WYP3 895 aaPredicted RBP6.98□□□□□ -1.29
CUX1-220ENST00000607092 PIK3R5Q8WYR1 880 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 TMEM143Q96AN5 459 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 ZNF707Q96C28 371 aaPredicted RBP6.98□□□□□ -1.29
CUX1-220ENST00000607092 MYADMQ96S97 322 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 GAD1Q99259 594 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 ADPGKQ9BRR6 497 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 C2orf40Q9H1Z8 148 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 PRMT7Q9NVM4 692 aaPredicted RBP6.98□□□□□ -1.29
CUX1-220ENST00000607092 MARCH5Q9NX47 278 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 DLL3Q9NYJ7 618 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 GDE1Q9NZC3 331 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 DLGAP2Q9P1A6 1054 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 FBXW11Q9UKB1 542 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 RAB23Q9ULC3 237 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 SNX14Q9Y5W7 946 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 CYP46A1Q9Y6A2 500 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 NUMBLQ9Y6R0 609 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 R4GN57 208 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 F5P12259 2224 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 PHLPP2Q6ZVD8 1323 aa6.98□□□□□ -1.29
CUX1-220ENST00000607092 USP24Q9UPU5 2620 aa6.97□□□□□ -1.29
CUX1-220ENST00000607092 A0A1B0GUA9 196 aa6.97□□□□□ -1.29
CUX1-220ENST00000607092 MEIS3P2A8K0S8 358 aa6.97□□□□□ -1.29
CUX1-220ENST00000607092 M0R2N6 131 aa6.97□□□□□ -1.29
CUX1-220ENST00000607092 N4BP1O75113 896 aaKnown RBP6.97□□□□□ -1.29
CUX1-220ENST00000607092 THP07101 528 aa6.97□□□□□ -1.29
CUX1-220ENST00000607092 C8AP07357 584 aa6.97□□□□□ -1.29
CUX1-220ENST00000607092 TIE1P35590 1138 aa6.97□□□□□ -1.29
CUX1-220ENST00000607092 RPS9P46781 194 aaKnown RBP6.97□□□□□ -1.29
CUX1-220ENST00000607092 NPEPPSP55786 919 aa6.97□□□□□ -1.29
CUX1-220ENST00000607092 CCT2P78371 535 aaKnown RBP6.97□□□□□ -1.29
CUX1-220ENST00000607092 DNAH14Q0VDD8 3507 aa6.97□□□□□ -1.29
CUX1-220ENST00000607092 MLF2Q15773 248 aaPredicted RBP6.97□□□□□ -1.29
CUX1-220ENST00000607092 INF2Q27J81 1249 aa6.97□□□□□ -1.29
CUX1-220ENST00000607092 VARS2Q5ST30 1063 aaKnown RBP6.97□□□□□ -1.29
CUX1-220ENST00000607092 ZBTB41Q5SVQ8 909 aa6.97□□□□□ -1.29
CUX1-220ENST00000607092 ERICH6BQ5W0A0 696 aa6.97□□□□□ -1.29
CUX1-220ENST00000607092 PLA2G4FQ68DD2 849 aa6.97□□□□□ -1.29
CUX1-220ENST00000607092 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.97□□□□□ -1.29
CUX1-220ENST00000607092 ZNF852Q6ZMS4 543 aa6.97□□□□□ -1.29
CUX1-220ENST00000607092 RUFY3Q7L099 469 aa6.97□□□□□ -1.29
CUX1-220ENST00000607092 DNASE1L2Q92874 299 aa6.97□□□□□ -1.29
CUX1-220ENST00000607092 RMDN1Q96DB5 314 aa6.97□□□□□ -1.29
CUX1-220ENST00000607092 UROC1Q96N76 676 aa6.97□□□□□ -1.29
CUX1-220ENST00000607092 DDX23Q9BUQ8 820 aaKnown RBP6.97□□□□□ -1.29
CUX1-220ENST00000607092 PHF20Q9BVI0 1012 aa6.97□□□□□ -1.29
CUX1-220ENST00000607092 TM6SF1Q9BZW5 370 aa6.97□□□□□ -1.29
CUX1-220ENST00000607092 MINDY3Q9H8M7 445 aa6.97□□□□□ -1.29
CUX1-220ENST00000607092 SPATA6Q9NWH7 488 aaPredicted RBP6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms