RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 FAN1Q9Y2M0 1017 aa15.18■□□□□ 0.02
UPF1-205ENST00000598209 PTGESO14684 152 aa15.17■□□□□ 0.02
UPF1-205ENST00000598209 NRP1O14786 923 aa15.17■□□□□ 0.02
UPF1-205ENST00000598209 ABCD1P33897 745 aa15.17■□□□□ 0.02
UPF1-205ENST00000598209 MATR3P43243 847 aaKnown RBP eCLIP15.17■□□□□ 0.02
UPF1-205ENST00000598209 OR1G1P47890 313 aa15.17■□□□□ 0.02
UPF1-205ENST00000598209 LIG4P49917 911 aa15.17■□□□□ 0.02
UPF1-205ENST00000598209 OSTNP61366 133 aa15.17■□□□□ 0.02
UPF1-205ENST00000598209 HYAL1Q12794 435 aa15.17■□□□□ 0.02
UPF1-205ENST00000598209 NOLC1Q14978 699 aaKnown RBP eCLIP15.17■□□□□ 0.02
UPF1-205ENST00000598209 ZC2HC1CQ53FD0 456 aaPredicted RBP15.17■□□□□ 0.02
UPF1-205ENST00000598209 PLPP4Q5VZY2 271 aa15.17■□□□□ 0.02
UPF1-205ENST00000598209 ADALQ6DHV7 355 aa15.17■□□□□ 0.02
UPF1-205ENST00000598209 ATXN2LQ8WWM7 1075 aaKnown RBP15.17■□□□□ 0.02
UPF1-205ENST00000598209 PPP2R3CQ969Q6 453 aa15.17■□□□□ 0.02
UPF1-205ENST00000598209 TCF25Q9BQ70 676 aa15.17■□□□□ 0.02
UPF1-205ENST00000598209 LRRC27Q9C0I9 530 aa15.17■□□□□ 0.02
UPF1-205ENST00000598209 CXCL16Q9H2A7 254 aa15.17■□□□□ 0.02
UPF1-205ENST00000598209 ST6GALNAC4Q9H4F1 302 aa15.17■□□□□ 0.02
UPF1-205ENST00000598209 MRPL44Q9H9J2 332 aaKnown RBP15.17■□□□□ 0.02
UPF1-205ENST00000598209 MAGEF1Q9HAY2 307 aa15.17■□□□□ 0.02
UPF1-205ENST00000598209 ENTPD7Q9NQZ7 604 aa15.17■□□□□ 0.02
UPF1-205ENST00000598209 PANK4Q9NVE7 773 aa15.17■□□□□ 0.02
UPF1-205ENST00000598209 TBC1D7Q9P0N9 293 aa15.17■□□□□ 0.02
UPF1-205ENST00000598209 KCNH3Q9ULD8 1083 aa15.17■□□□□ 0.02
UPF1-205ENST00000598209 PRG3Q9Y2Y8 225 aaPredicted RBP15.17■□□□□ 0.02
UPF1-205ENST00000598209 TCF20Q9UGU0 1960 aaKnown RBP15.16■□□□□ 0.02
UPF1-205ENST00000598209 FRMD3A2A2Y4 597 aa15.16■□□□□ 0.02
UPF1-205ENST00000598209 HNRNPDLO14979 420 aaKnown RBP15.16■□□□□ 0.02
UPF1-205ENST00000598209 CLDN3O15551 220 aa15.16■□□□□ 0.02
UPF1-205ENST00000598209 NR1I2O75469 434 aa15.16■□□□□ 0.02
UPF1-205ENST00000598209 PIGRP01833 764 aa15.16■□□□□ 0.02
UPF1-205ENST00000598209 THP07101 528 aa15.16■□□□□ 0.02
UPF1-205ENST00000598209 CMA1P23946 247 aa15.16■□□□□ 0.02
UPF1-205ENST00000598209 GTF2F1P35269 517 aaKnown RBP eCLIP15.16■□□□□ 0.02
UPF1-205ENST00000598209 YARSP54577 528 aaKnown RBP15.16■□□□□ 0.02
UPF1-205ENST00000598209 AMPD3Q01432 767 aa15.16■□□□□ 0.02
UPF1-205ENST00000598209 TFF2Q03403 129 aa15.16■□□□□ 0.02
UPF1-205ENST00000598209 MCL1Q07820 350 aa15.16■□□□□ 0.02
UPF1-205ENST00000598209 HERC4Q5GLZ8 1057 aaPredicted RBP15.16■□□□□ 0.02
UPF1-205ENST00000598209 ZNF720Q7Z2F6 126 aa15.16■□□□□ 0.02
UPF1-205ENST00000598209 TMC7Q7Z402 723 aa15.16■□□□□ 0.02
UPF1-205ENST00000598209 DDX53Q86TM3 631 aaKnown RBP15.16■□□□□ 0.02
UPF1-205ENST00000598209 MAP4K3Q8IVH8 894 aa15.16■□□□□ 0.02
UPF1-205ENST00000598209 CCDC65Q8IXS2 484 aa15.16■□□□□ 0.02
UPF1-205ENST00000598209 ACAP3Q96P50 834 aa15.16■□□□□ 0.02
UPF1-205ENST00000598209 PYM1Q9BRP8 204 aaKnown RBP15.16■□□□□ 0.02
UPF1-205ENST00000598209 TRIM9Q9C026 710 aa15.16■□□□□ 0.02
UPF1-205ENST00000598209 HAPLN2Q9GZV7 340 aa15.16■□□□□ 0.02
UPF1-205ENST00000598209 IGFLR1Q9H665 355 aa15.16■□□□□ 0.02
UPF1-205ENST00000598209 UBE2ZQ9H832 354 aaPredicted RBP15.16■□□□□ 0.02
UPF1-205ENST00000598209 NGRNQ9NPE2 291 aaKnown RBP15.16■□□□□ 0.02
UPF1-205ENST00000598209 TOPORSQ9NS56 1045 aaPredicted RBP15.16■□□□□ 0.02
UPF1-205ENST00000598209 ANK1P16157 1881 aa15.15■□□□□ 0.02
UPF1-205ENST00000598209 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.15■□□□□ 0.02
UPF1-205ENST00000598209 A0A1B0GVL5 298 aa15.15■□□□□ 0.02
UPF1-205ENST00000598209 NCK2O43639 380 aa15.15■□□□□ 0.02
UPF1-205ENST00000598209 PPP1R37O75864 691 aa15.15■□□□□ 0.02
UPF1-205ENST00000598209 PFKFB1P16118 471 aa15.15■□□□□ 0.02
UPF1-205ENST00000598209 NRIP1P48552 1158 aa15.15■□□□□ 0.02
UPF1-205ENST00000598209 ASIC1P78348 528 aa15.15■□□□□ 0.02
UPF1-205ENST00000598209 MRPS5P82675 430 aaKnown RBP15.15■□□□□ 0.02
UPF1-205ENST00000598209 COASYQ13057 564 aa15.15■□□□□ 0.02
UPF1-205ENST00000598209 TUSC3Q13454 348 aa15.15■□□□□ 0.02
UPF1-205ENST00000598209 SMC1AQ14683 1233 aaKnown RBP15.15■□□□□ 0.02
UPF1-205ENST00000598209 BMS1Q14692 1282 aaKnown RBP15.15■□□□□ 0.02
UPF1-205ENST00000598209 COL19A1Q14993 1142 aa15.15■□□□□ 0.02
UPF1-205ENST00000598209 EP400NLQ6ZTU2 488 aa15.15■□□□□ 0.02
UPF1-205ENST00000598209 RBM23Q86U06 439 aaKnown RBP15.15■□□□□ 0.02
UPF1-205ENST00000598209 VPS52Q8N1B4 723 aa15.15■□□□□ 0.02
UPF1-205ENST00000598209 HVCN1Q96D96 273 aa15.15■□□□□ 0.02
UPF1-205ENST00000598209 PABPC5Q96DU9 382 aaKnown RBP15.15■□□□□ 0.02
UPF1-205ENST00000598209 COLEC11Q9BWP8 271 aa15.15■□□□□ 0.02
UPF1-205ENST00000598209 VN1R3Q9BXE9 311 aa15.15■□□□□ 0.02
UPF1-205ENST00000598209 ZBP1Q9H171 429 aa15.15■□□□□ 0.02
UPF1-205ENST00000598209 TLE6Q9H808 572 aa15.15■□□□□ 0.02
UPF1-205ENST00000598209 GDPD2Q9HCC8 539 aa15.15■□□□□ 0.02
UPF1-205ENST00000598209 OLFML3Q9NRN5 406 aa15.15■□□□□ 0.02
UPF1-205ENST00000598209 MARCH5Q9NX47 278 aa15.15■□□□□ 0.02
UPF1-205ENST00000598209 CLDND1Q9NY35 253 aa15.15■□□□□ 0.02
UPF1-205ENST00000598209 CACNG4Q9UBN1 327 aa15.15■□□□□ 0.02
UPF1-205ENST00000598209 UNC80Q8N2C7 3258 aa15.14■□□□□ 0.01
UPF1-205ENST00000598209 CASTOR2A6NHX0 329 aa15.14■□□□□ 0.01
UPF1-205ENST00000598209 HIDE1A8MVS5 230 aa15.14■□□□□ 0.01
UPF1-205ENST00000598209 F8W810 466 aa15.14■□□□□ 0.01
UPF1-205ENST00000598209 GCNT3O95395 438 aa15.14■□□□□ 0.01
UPF1-205ENST00000598209 NAB2Q15742 525 aa15.14■□□□□ 0.01
UPF1-205ENST00000598209 AAK1Q2M2I8 961 aa15.14■□□□□ 0.01
UPF1-205ENST00000598209 TPRNQ4KMQ1 711 aa15.14■□□□□ 0.01
UPF1-205ENST00000598209 SEZ6Q53EL9 994 aa15.14■□□□□ 0.01
UPF1-205ENST00000598209 GLRA4Q5JXX5 417 aa15.14■□□□□ 0.01
UPF1-205ENST00000598209 CNNM4Q6P4Q7 775 aa15.14■□□□□ 0.01
UPF1-205ENST00000598209 SLC39A4Q6P5W5 647 aa15.14■□□□□ 0.01
UPF1-205ENST00000598209 CEP57L1Q8IYX8 460 aa15.14■□□□□ 0.01
UPF1-205ENST00000598209 RABGGTAQ92696 567 aa15.14■□□□□ 0.01
UPF1-205ENST00000598209 SNX27Q96L92 541 aa15.14■□□□□ 0.01
UPF1-205ENST00000598209 ASB2Q96Q27 587 aa15.14■□□□□ 0.01
UPF1-205ENST00000598209 PPP1R10Q96QC0 940 aaKnown RBP15.14■□□□□ 0.01
UPF1-205ENST00000598209 C7orf25Q9BPX7 421 aa15.14■□□□□ 0.01
UPF1-205ENST00000598209 STRA6Q9BX79 667 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms