RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 SYCE2Q6PIF2 218 aa11.55□□□□□ -0.56
LIG3-212ENST00000590181 UBALD2Q8IYN6 164 aa11.55□□□□□ -0.56
LIG3-212ENST00000590181 VPS52Q8N1B4 723 aa11.55□□□□□ -0.56
LIG3-212ENST00000590181 TMEM105Q8N8V8 129 aa11.55□□□□□ -0.56
LIG3-212ENST00000590181 HDAC7Q8WUI4 952 aa11.55□□□□□ -0.56
LIG3-212ENST00000590181 RPS6KC1Q96S38 1066 aa11.55□□□□□ -0.56
LIG3-212ENST00000590181 RHOBTB2Q9BYZ6 727 aa11.55□□□□□ -0.56
LIG3-212ENST00000590181 ZBP1Q9H171 429 aa11.55□□□□□ -0.56
LIG3-212ENST00000590181 S1PR5Q9H228 398 aa11.55□□□□□ -0.56
LIG3-212ENST00000590181 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.55□□□□□ -0.56
LIG3-212ENST00000590181 MRPL17Q9NRX2 175 aaKnown RBP11.55□□□□□ -0.56
LIG3-212ENST00000590181 TOPORSQ9NS56 1045 aaPredicted RBP11.55□□□□□ -0.56
LIG3-212ENST00000590181 SORCS3Q9UPU3 1222 aa11.55□□□□□ -0.56
LIG3-212ENST00000590181 TNFSF13BQ9Y275 285 aa11.55□□□□□ -0.56
LIG3-212ENST00000590181 HIDE1A8MVS5 230 aa11.54□□□□□ -0.56
LIG3-212ENST00000590181 C2CD4DB7Z1M9 353 aa11.54□□□□□ -0.56
LIG3-212ENST00000590181 BRD1O95696 1058 aa11.54□□□□□ -0.56
LIG3-212ENST00000590181 THP07101 528 aa11.54□□□□□ -0.56
LIG3-212ENST00000590181 PLS3P13797 630 aa11.54□□□□□ -0.56
LIG3-212ENST00000590181 SYT1P21579 422 aa11.54□□□□□ -0.56
LIG3-212ENST00000590181 TXLNAP40222 546 aa11.54□□□□□ -0.56
LIG3-212ENST00000590181 NBL1P41271 181 aa11.54□□□□□ -0.56
LIG3-212ENST00000590181 NBR1Q14596 966 aa11.54□□□□□ -0.56
LIG3-212ENST00000590181 IL17AQ16552 155 aa11.54□□□□□ -0.56
LIG3-212ENST00000590181 ATL3Q6DD88 541 aa11.54□□□□□ -0.56
LIG3-212ENST00000590181 CES5AQ6NT32 575 aa11.54□□□□□ -0.56
LIG3-212ENST00000590181 RTL10Q7L3V2 364 aa11.54□□□□□ -0.56
LIG3-212ENST00000590181 CABP7Q86V35 215 aa11.54□□□□□ -0.56
LIG3-212ENST00000590181 COLGALT2Q8IYK4 626 aa11.54□□□□□ -0.56
LIG3-212ENST00000590181 LPPQ93052 612 aa11.54□□□□□ -0.56
LIG3-212ENST00000590181 UROC1Q96N76 676 aa11.54□□□□□ -0.56
LIG3-212ENST00000590181 MMTAG2Q9BU76 263 aaKnown RBP11.54□□□□□ -0.56
LIG3-212ENST00000590181 MRPL4Q9BYD3 311 aaKnown RBP11.54□□□□□ -0.56
LIG3-212ENST00000590181 CCSER1Q9C0I3 900 aa11.54□□□□□ -0.56
LIG3-212ENST00000590181 POMKQ9H5K3 350 aa11.54□□□□□ -0.56
LIG3-212ENST00000590181 GPRC5CQ9NQ84 441 aa11.54□□□□□ -0.56
LIG3-212ENST00000590181 KMT5AQ9NQR1 393 aa11.54□□□□□ -0.56
LIG3-212ENST00000590181 BMP2KQ9NSY1 1161 aaPredicted RBP11.54□□□□□ -0.56
LIG3-212ENST00000590181 ARHGAP28Q9P2N2 729 aa11.54□□□□□ -0.56
LIG3-212ENST00000590181 CCDC39Q9UFE4 941 aa11.54□□□□□ -0.56
LIG3-212ENST00000590181 INPP5FQ9Y2H2 1132 aa11.54□□□□□ -0.56
LIG3-212ENST00000590181 VPS37CA5D8V6 355 aaPredicted RBP11.53□□□□□ -0.56
LIG3-212ENST00000590181 CCDC169A6NNP5 214 aa11.53□□□□□ -0.56
LIG3-212ENST00000590181 NRP1O14786 923 aa11.53□□□□□ -0.56
LIG3-212ENST00000590181 NPTXRO95502 500 aa11.53□□□□□ -0.56
LIG3-212ENST00000590181 SOD2P04179 222 aa11.53□□□□□ -0.56
LIG3-212ENST00000590181 PAX3P23760 479 aa11.53□□□□□ -0.56
LIG3-212ENST00000590181 PBX3P40426 434 aa11.53□□□□□ -0.56
LIG3-212ENST00000590181 MTHFRP42898 656 aa11.53□□□□□ -0.56
LIG3-212ENST00000590181 NPTX2P47972 431 aa11.53□□□□□ -0.56
LIG3-212ENST00000590181 YARSP54577 528 aaKnown RBP11.53□□□□□ -0.56
LIG3-212ENST00000590181 POU5F1Q01860 360 aaKnown RBP11.53□□□□□ -0.56
LIG3-212ENST00000590181 TUSC3Q13454 348 aa11.53□□□□□ -0.56
LIG3-212ENST00000590181 ECM1Q16610 540 aa11.53□□□□□ -0.56
LIG3-212ENST00000590181 USP41Q3LFD5 358 aa11.53□□□□□ -0.56
LIG3-212ENST00000590181 TMEM119Q4V9L6 283 aa11.53□□□□□ -0.56
LIG3-212ENST00000590181 ATF7IP2Q5U623 682 aa11.53□□□□□ -0.56
LIG3-212ENST00000590181 ZPBP2Q6X784 338 aa11.53□□□□□ -0.56
LIG3-212ENST00000590181 MAEAQ7L5Y9 396 aa11.53□□□□□ -0.56
LIG3-212ENST00000590181 FRMD5Q7Z6J6 570 aa11.53□□□□□ -0.56
LIG3-212ENST00000590181 DDX27Q96GQ7 796 aaKnown RBP11.53□□□□□ -0.56
LIG3-212ENST00000590181 CPB2Q96IY4 423 aa11.53□□□□□ -0.56
LIG3-212ENST00000590181 GAD1Q99259 594 aa11.53□□□□□ -0.56
LIG3-212ENST00000590181 CCDC94Q9BW85 323 aaPredicted RBP11.53□□□□□ -0.56
LIG3-212ENST00000590181 EIF2AQ9BY44 585 aaKnown RBP11.53□□□□□ -0.56
LIG3-212ENST00000590181 SMOC2Q9H3U7 446 aa11.53□□□□□ -0.56
LIG3-212ENST00000590181 PDZD7Q9H5P4 517 aa11.53□□□□□ -0.56
LIG3-212ENST00000590181 SLC38A7Q9NVC3 462 aa11.53□□□□□ -0.56
LIG3-212ENST00000590181 FNIP2Q9P278 1114 aa11.53□□□□□ -0.56
LIG3-212ENST00000590181 STK17AQ9UEE5 414 aa11.53□□□□□ -0.56
LIG3-212ENST00000590181 SRPRBQ9Y5M8 271 aaKnown RBP11.53□□□□□ -0.56
LIG3-212ENST00000590181 E9PMD0 336 aa11.52□□□□□ -0.57
LIG3-212ENST00000590181 B4GALT5O43286 388 aa11.52□□□□□ -0.57
LIG3-212ENST00000590181 TRAPPC3O43617 180 aa11.52□□□□□ -0.57
LIG3-212ENST00000590181 STX6O43752 255 aa11.52□□□□□ -0.57
LIG3-212ENST00000590181 HIP1RO75146 1068 aa11.52□□□□□ -0.57
LIG3-212ENST00000590181 TOM1L1O75674 476 aa11.52□□□□□ -0.57
LIG3-212ENST00000590181 DDHD2O94830 711 aa11.52□□□□□ -0.57
LIG3-212ENST00000590181 EFEMP2O95967 443 aa11.52□□□□□ -0.57
LIG3-212ENST00000590181 POMCP01189 267 aa11.52□□□□□ -0.57
LIG3-212ENST00000590181 URODP06132 367 aa11.52□□□□□ -0.57
LIG3-212ENST00000590181 ADH1AP07327 375 aa11.52□□□□□ -0.57
LIG3-212ENST00000590181 PLA2G4BP0C869 781 aa11.52□□□□□ -0.57
LIG3-212ENST00000590181 MCF2P10911 925 aa11.52□□□□□ -0.57
LIG3-212ENST00000590181 CA8P35219 290 aa11.52□□□□□ -0.57
LIG3-212ENST00000590181 DDIT3P35638 169 aa11.52□□□□□ -0.57
LIG3-212ENST00000590181 SLC11A1P49279 550 aa11.52□□□□□ -0.57
LIG3-212ENST00000590181 SLC12A3P55017 1021 aa11.52□□□□□ -0.57
LIG3-212ENST00000590181 PEX3P56589 373 aa11.52□□□□□ -0.57
LIG3-212ENST00000590181 SF3A1Q15459 793 aaKnown RBP11.52□□□□□ -0.57
LIG3-212ENST00000590181 ZNF280BQ86YH2 543 aa11.52□□□□□ -0.57
LIG3-212ENST00000590181 TDRD5Q8NAT2 981 aaKnown RBP11.52□□□□□ -0.57
LIG3-212ENST00000590181 RASSF8Q8NHQ8 419 aa11.52□□□□□ -0.57
LIG3-212ENST00000590181 ACO2Q99798 780 aaKnown RBP11.52□□□□□ -0.57
LIG3-212ENST00000590181 HERC2P3Q9BVR0 1158 aa11.52□□□□□ -0.57
LIG3-212ENST00000590181 LRRC27Q9C0I9 530 aa11.52□□□□□ -0.57
LIG3-212ENST00000590181 GBP3Q9H0R5 595 aa11.52□□□□□ -0.57
LIG3-212ENST00000590181 ADAM7Q9H2U9 754 aa11.52□□□□□ -0.57
LIG3-212ENST00000590181 MFSD1Q9H3U5 465 aa11.52□□□□□ -0.57
LIG3-212ENST00000590181 PLEKHA4Q9H4M7 779 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms