RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	ARHGAP25	P42331	645 aa		16.66	■□□□□ 0.26
DDX39A-209	ENST00000589318	GCLM	P48507	274 aa		16.66	■□□□□ 0.26
DDX39A-209	ENST00000589318	EFNA5	P52803	228 aa		16.66	■□□□□ 0.26
DDX39A-209	ENST00000589318	IGBP1	P78318	339 aa		16.66	■□□□□ 0.26
DDX39A-209	ENST00000589318	EPC2	Q52LR7	807 aa		16.66	■□□□□ 0.26
DDX39A-209	ENST00000589318	SFMBT2	Q5VUG0	894 aa		16.66	■□□□□ 0.26
DDX39A-209	ENST00000589318	IQCE	Q6IPM2	695 aa		16.66	■□□□□ 0.26
DDX39A-209	ENST00000589318	RHPN2	Q8IUC4	686 aa		16.66	■□□□□ 0.26
DDX39A-209	ENST00000589318	TMC2	Q8TDI7	906 aa		16.66	■□□□□ 0.26
DDX39A-209	ENST00000589318	ARHGAP39	Q9C0H5	1083 aa		16.66	■□□□□ 0.26
DDX39A-209	ENST00000589318	TMEM117	Q9H0C3	514 aa		16.66	■□□□□ 0.26
DDX39A-209	ENST00000589318	INTS2	Q9H0H0	1204 aa	Known RBP	16.66	■□□□□ 0.26
DDX39A-209	ENST00000589318	CDC23	Q9UJX2	597 aa		16.66	■□□□□ 0.26
DDX39A-209	ENST00000589318	FAN1	Q9Y2M0	1017 aa		16.66	■□□□□ 0.26
DDX39A-209	ENST00000589318	CENPF	P49454	3210 aa		16.66	■□□□□ 0.26
DDX39A-209	ENST00000589318		A0A0B4J269	797 aa		16.65	■□□□□ 0.26
DDX39A-209	ENST00000589318	P4HA2	O15460	535 aa		16.65	■□□□□ 0.26
DDX39A-209	ENST00000589318	DYNC1LI2	O43237	492 aa	Predicted RBP	16.65	■□□□□ 0.26
DDX39A-209	ENST00000589318	CYLC1	P35663	651 aa	Predicted RBP	16.65	■□□□□ 0.26
DDX39A-209	ENST00000589318	MAP2K2	P36507	400 aa		16.65	■□□□□ 0.26
DDX39A-209	ENST00000589318	EIF4A3	P38919	411 aa	Known RBP	16.65	■□□□□ 0.26
DDX39A-209	ENST00000589318	ENPEP	Q07075	957 aa		16.65	■□□□□ 0.26
DDX39A-209	ENST00000589318	CRELD2	Q6UXH1	353 aa	Predicted RBP	16.65	■□□□□ 0.26
DDX39A-209	ENST00000589318	WDR24	Q96S15	920 aa		16.65	■□□□□ 0.26
DDX39A-209	ENST00000589318	FAM213A	Q9BRX8	229 aa		16.65	■□□□□ 0.26
DDX39A-209	ENST00000589318	LZTFL1	Q9NQ48	299 aa		16.65	■□□□□ 0.26
DDX39A-209	ENST00000589318	MYO6	Q9UM54	1294 aa		16.65	■□□□□ 0.26
DDX39A-209	ENST00000589318	SSU72P8	A0A1W2PR75	194 aa		16.64	■□□□□ 0.26
DDX39A-209	ENST00000589318	EXTL3	O43909	919 aa		16.64	■□□□□ 0.26
DDX39A-209	ENST00000589318	AOC2	O75106	756 aa		16.64	■□□□□ 0.26
DDX39A-209	ENST00000589318	LRRN2	O75325	713 aa		16.64	■□□□□ 0.26
DDX39A-209	ENST00000589318	LCA5L	O95447	670 aa		16.64	■□□□□ 0.26
DDX39A-209	ENST00000589318	AARS	P49588	968 aa	Known RBP eCLIP	16.64	■□□□□ 0.26	2e-6	■■■■■ 30.9
DDX39A-209	ENST00000589318	NLRP11	P59045	1033 aa	Known RBP	16.64	■□□□□ 0.26
DDX39A-209	ENST00000589318	RAPGEF1	Q13905	1077 aa		16.64	■□□□□ 0.26
DDX39A-209	ENST00000589318	MARCH8	Q5T0T0	291 aa		16.64	■□□□□ 0.26
DDX39A-209	ENST00000589318	ZPBP2	Q6X784	338 aa		16.64	■□□□□ 0.26
DDX39A-209	ENST00000589318	IRF2BP2	Q7Z5L9	587 aa		16.64	■□□□□ 0.26
DDX39A-209	ENST00000589318	TLK2	Q86UE8	772 aa		16.64	■□□□□ 0.26
DDX39A-209	ENST00000589318	METTL13	Q8N6R0	699 aa		16.64	■□□□□ 0.26
DDX39A-209	ENST00000589318	CEP120	Q8N960	986 aa		16.64	■□□□□ 0.26
DDX39A-209	ENST00000589318	CCDC42	Q96M95	316 aa		16.64	■□□□□ 0.26
DDX39A-209	ENST00000589318	POP1	Q99575	1024 aa	Known RBP	16.64	■□□□□ 0.26
DDX39A-209	ENST00000589318	IRX2	Q9BZI1	471 aa	Predicted RBP	16.64	■□□□□ 0.26
DDX39A-209	ENST00000589318	ANKZF1	Q9H8Y5	726 aa		16.64	■□□□□ 0.26
DDX39A-209	ENST00000589318	AGO2	Q9UKV8	859 aa	Known RBP	16.64	■□□□□ 0.26
DDX39A-209	ENST00000589318	ABLIM1	O14639	778 aa		16.64	■□□□□ 0.25
DDX39A-209	ENST00000589318	KIAA0391	O15091	583 aa	Known RBP	16.64	■□□□□ 0.25
DDX39A-209	ENST00000589318	MAGEB2	O15479	319 aa		16.64	■□□□□ 0.25
DDX39A-209	ENST00000589318	N4BP1	O75113	896 aa	Known RBP	16.64	■□□□□ 0.25
DDX39A-209	ENST00000589318	SERPING1	P05155	500 aa		16.64	■□□□□ 0.25
DDX39A-209	ENST00000589318	KIF11	P52732	1056 aa		16.64	■□□□□ 0.25
DDX39A-209	ENST00000589318	WNT7B	P56706	349 aa		16.64	■□□□□ 0.25
DDX39A-209	ENST00000589318	CAP1	Q01518	475 aa		16.64	■□□□□ 0.25
DDX39A-209	ENST00000589318	NOG	Q13253	232 aa		16.64	■□□□□ 0.25
DDX39A-209	ENST00000589318	SLFN12L	Q6IEE8	588 aa		16.64	■□□□□ 0.25
DDX39A-209	ENST00000589318	EHBP1	Q8NDI1	1231 aa		16.64	■□□□□ 0.25
DDX39A-209	ENST00000589318	KAT2B	Q92831	832 aa		16.64	■□□□□ 0.25
DDX39A-209	ENST00000589318	CCDC127	Q96BQ5	260 aa		16.64	■□□□□ 0.25
DDX39A-209	ENST00000589318	ZNF668	Q96K58	619 aa	Predicted RBP	16.64	■□□□□ 0.25
DDX39A-209	ENST00000589318	GPR88	Q9GZN0	384 aa		16.64	■□□□□ 0.25
DDX39A-209	ENST00000589318	TOPORS	Q9NS56	1045 aa	Predicted RBP	16.64	■□□□□ 0.25
DDX39A-209	ENST00000589318	APEX2	Q9UBZ4	518 aa		16.64	■□□□□ 0.25
DDX39A-209	ENST00000589318	RCCD1	A6NED2	376 aa		16.63	■□□□□ 0.25
DDX39A-209	ENST00000589318	ZNF233	A6NK53	670 aa		16.63	■□□□□ 0.25
DDX39A-209	ENST00000589318	ASAP2	O43150	1006 aa		16.63	■□□□□ 0.25
DDX39A-209	ENST00000589318	FAM189A1	O60320	539 aa		16.63	■□□□□ 0.25
DDX39A-209	ENST00000589318	ALDH1A1	P00352	501 aa		16.63	■□□□□ 0.25
DDX39A-209	ENST00000589318	F2	P00734	622 aa		16.63	■□□□□ 0.25
DDX39A-209	ENST00000589318	PRKCB	P05771	671 aa		16.63	■□□□□ 0.25
DDX39A-209	ENST00000589318	MXI1	P50539	228 aa		16.63	■□□□□ 0.25
DDX39A-209	ENST00000589318	PTEN	P60484	403 aa		16.63	■□□□□ 0.25
DDX39A-209	ENST00000589318	CLDN10	P78369	228 aa		16.63	■□□□□ 0.25
DDX39A-209	ENST00000589318	LACTB	P83111	547 aa	Predicted RBP	16.63	■□□□□ 0.25
DDX39A-209	ENST00000589318	CYP27A1	Q02318	531 aa		16.63	■□□□□ 0.25
DDX39A-209	ENST00000589318	GRIK4	Q16099	956 aa		16.63	■□□□□ 0.25
DDX39A-209	ENST00000589318	ZBTB41	Q5SVQ8	909 aa		16.63	■□□□□ 0.25
DDX39A-209	ENST00000589318	PHLDB3	Q6NSJ2	640 aa		16.63	■□□□□ 0.25
DDX39A-209	ENST00000589318	MTHFD1L	Q6UB35	978 aa		16.63	■□□□□ 0.25
DDX39A-209	ENST00000589318	ZBTB8OS	Q8IWT0	167 aa		16.63	■□□□□ 0.25
DDX39A-209	ENST00000589318	GPATCH11	Q8N954	259 aa		16.63	■□□□□ 0.25
DDX39A-209	ENST00000589318	NLRP4	Q96MN2	994 aa		16.63	■□□□□ 0.25
DDX39A-209	ENST00000589318	ACO2	Q99798	780 aa	Known RBP	16.63	■□□□□ 0.25
DDX39A-209	ENST00000589318	NFKBIZ	Q9BYH8	718 aa		16.63	■□□□□ 0.25
DDX39A-209	ENST00000589318	C2orf40	Q9H1Z8	148 aa		16.63	■□□□□ 0.25
DDX39A-209	ENST00000589318	EPC1	Q9H2F5	836 aa		16.63	■□□□□ 0.25
DDX39A-209	ENST00000589318	FZD8	Q9H461	694 aa		16.63	■□□□□ 0.25
DDX39A-209	ENST00000589318	MINDY3	Q9H8M7	445 aa		16.63	■□□□□ 0.25
DDX39A-209	ENST00000589318	IFT122	Q9HBG6	1241 aa		16.63	■□□□□ 0.25
DDX39A-209	ENST00000589318	KIAA1586	Q9HCI6	787 aa		16.63	■□□□□ 0.25
DDX39A-209	ENST00000589318	ANKFY1	Q9P2R3	1169 aa		16.63	■□□□□ 0.25
DDX39A-209	ENST00000589318	TFR2	Q9UP52	801 aa		16.63	■□□□□ 0.25
DDX39A-209	ENST00000589318	COQ4	Q9Y3A0	265 aa		16.63	■□□□□ 0.25
DDX39A-209	ENST00000589318	ATXN2	Q99700	1313 aa	Known RBP	16.63	■□□□□ 0.25
DDX39A-209	ENST00000589318		A6NNZ2	444 aa		16.62	■□□□□ 0.25
DDX39A-209	ENST00000589318	ERLIN2	O94905	339 aa		16.62	■□□□□ 0.25
DDX39A-209	ENST00000589318	PSMC4	P43686	418 aa		16.62	■□□□□ 0.25
DDX39A-209	ENST00000589318	ACOT2	P49753	483 aa		16.62	■□□□□ 0.25
DDX39A-209	ENST00000589318	MBTD1	Q05BQ5	628 aa		16.62	■□□□□ 0.25
DDX39A-209	ENST00000589318	PPFIA1	Q13136	1202 aa		16.62	■□□□□ 0.25

Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms