RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 BCAR1P56945 870 aa4.92□□□□□ -1.62
SMCHD1-209ENST00000583441 SCAND1P57086 179 aa4.92□□□□□ -1.62
SMCHD1-209ENST00000583441 PRAMEF9Q5VWM5 478 aa4.92□□□□□ -1.62
SMCHD1-209ENST00000583441 SLFN12LQ6IEE8 588 aa4.92□□□□□ -1.62
SMCHD1-209ENST00000583441 KIAA1841Q6NSI8 718 aa4.92□□□□□ -1.62
SMCHD1-209ENST00000583441 PGM2L1Q6PCE3 622 aa4.92□□□□□ -1.62
SMCHD1-209ENST00000583441 C1QL2Q7Z5L3 287 aa4.92□□□□□ -1.62
SMCHD1-209ENST00000583441 FAM98AQ8NCA5 519 aaKnown RBP4.92□□□□□ -1.62
SMCHD1-209ENST00000583441 ERCC4Q92889 916 aaPredicted RBP4.92□□□□□ -1.62
SMCHD1-209ENST00000583441 FOXRED1Q96CU9 486 aaPredicted RBP4.92□□□□□ -1.62
SMCHD1-209ENST00000583441 RAX2Q96IS3 184 aa4.92□□□□□ -1.62
SMCHD1-209ENST00000583441 FAXDC2Q96IV6 333 aa4.92□□□□□ -1.62
SMCHD1-209ENST00000583441 C1QTNF7Q9BXJ2 289 aa4.92□□□□□ -1.62
SMCHD1-209ENST00000583441 CCM2LQ9NUG4 571 aaPredicted RBP4.92□□□□□ -1.62
SMCHD1-209ENST00000583441 GALNT8Q9NY28 637 aa4.92□□□□□ -1.62
SMCHD1-209ENST00000583441 ZIM2Q9NZV7 527 aa4.92□□□□□ -1.62
SMCHD1-209ENST00000583441 RFPL1O75677 317 aa4.91□□□□□ -1.62
SMCHD1-209ENST00000583441 PRPF6O94906 941 aaKnown RBP4.91□□□□□ -1.62
SMCHD1-209ENST00000583441 ABLIM3O94929 683 aa4.91□□□□□ -1.62
SMCHD1-209ENST00000583441 SCGB1D2O95969 90 aa4.91□□□□□ -1.62
SMCHD1-209ENST00000583441 CT47B1P0C2W7 299 aaPredicted RBP4.91□□□□□ -1.62
SMCHD1-209ENST00000583441 CXCR5P32302 372 aa4.91□□□□□ -1.62
SMCHD1-209ENST00000583441 GPR3P46089 330 aa4.91□□□□□ -1.62
SMCHD1-209ENST00000583441 STAT5BP51692 787 aa4.91□□□□□ -1.62
SMCHD1-209ENST00000583441 ATP2C1P98194 919 aaPredicted RBP4.91□□□□□ -1.62
SMCHD1-209ENST00000583441 ADCY2Q08462 1091 aa4.91□□□□□ -1.62
SMCHD1-209ENST00000583441 MOGSQ13724 837 aa4.91□□□□□ -1.62
SMCHD1-209ENST00000583441 PDCD1Q15116 288 aa4.91□□□□□ -1.62
SMCHD1-209ENST00000583441 KLHL22Q53GT1 634 aa4.91□□□□□ -1.62
SMCHD1-209ENST00000583441 CHPFQ8IZ52 775 aa4.91□□□□□ -1.62
SMCHD1-209ENST00000583441 SIMC1Q8NDZ2 872 aa4.91□□□□□ -1.62
SMCHD1-209ENST00000583441 CPT1CQ8TCG5 803 aa4.91□□□□□ -1.62
SMCHD1-209ENST00000583441 CAVIN3Q969G5 261 aa4.91□□□□□ -1.62
SMCHD1-209ENST00000583441 ZNF496Q96IT1 587 aaPredicted RBP4.91□□□□□ -1.62
SMCHD1-209ENST00000583441 C8orf48Q96LL4 319 aa4.91□□□□□ -1.62
SMCHD1-209ENST00000583441 ZNF778Q96MU6 729 aa4.91□□□□□ -1.62
SMCHD1-209ENST00000583441 FAM193BQ96PV7 902 aaPredicted RBP4.91□□□□□ -1.62
SMCHD1-209ENST00000583441 BTBD2Q9BX70 525 aa4.91□□□□□ -1.62
SMCHD1-209ENST00000583441 POFUT1Q9H488 388 aa4.91□□□□□ -1.62
SMCHD1-209ENST00000583441 SORCS3Q9UPU3 1222 aa4.91□□□□□ -1.62
SMCHD1-209ENST00000583441 LUC7L2Q9Y383 392 aaKnown RBP4.91□□□□□ -1.62
SMCHD1-209ENST00000583441 NUMBLQ9Y6R0 609 aa4.91□□□□□ -1.62
SMCHD1-209ENST00000583441 CENPVL1A0A0U1RR11 272 aa4.9□□□□□ -1.63
SMCHD1-209ENST00000583441 KLHL33A6NCF5 533 aa4.9□□□□□ -1.63
SMCHD1-209ENST00000583441 FZD9O00144 591 aa4.9□□□□□ -1.63
SMCHD1-209ENST00000583441 MFAP3LO75121 409 aa4.9□□□□□ -1.63
SMCHD1-209ENST00000583441 MPIG6BO95866 241 aa4.9□□□□□ -1.63
SMCHD1-209ENST00000583441 APEX1P27695 318 aaKnown RBP4.9□□□□□ -1.63
SMCHD1-209ENST00000583441 ECE1P42892 770 aa4.9□□□□□ -1.63
SMCHD1-209ENST00000583441 SLC5A3P53794 718 aa4.9□□□□□ -1.63
SMCHD1-209ENST00000583441 MRPS9P82933 396 aaKnown RBP4.9□□□□□ -1.63
SMCHD1-209ENST00000583441 CD83Q01151 205 aa4.9□□□□□ -1.63
SMCHD1-209ENST00000583441 SLC6A3Q01959 620 aa4.9□□□□□ -1.63
SMCHD1-209ENST00000583441 MAP3K12Q12852 859 aa4.9□□□□□ -1.63
SMCHD1-209ENST00000583441 STILQ15468 1287 aa4.9□□□□□ -1.63
SMCHD1-209ENST00000583441 UGT8Q16880 541 aa4.9□□□□□ -1.63
SMCHD1-209ENST00000583441 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.9□□□□□ -1.63
SMCHD1-209ENST00000583441 CCDC178Q5BJE1 867 aa4.9□□□□□ -1.63
SMCHD1-209ENST00000583441 TMEM200BQ69YZ2 307 aa4.9□□□□□ -1.63
SMCHD1-209ENST00000583441 NXNQ6DKJ4 435 aa4.9□□□□□ -1.63
SMCHD1-209ENST00000583441 CXorf57Q6NSI4 855 aaKnown RBP4.9□□□□□ -1.63
SMCHD1-209ENST00000583441 HTR3DQ70Z44 454 aa4.9□□□□□ -1.63
SMCHD1-209ENST00000583441 KANSL1Q7Z3B3 1105 aa4.9□□□□□ -1.63
SMCHD1-209ENST00000583441 MB21D1Q8N884 522 aa4.9□□□□□ -1.63
SMCHD1-209ENST00000583441 NUP88Q99567 741 aaPredicted RBP4.9□□□□□ -1.63
SMCHD1-209ENST00000583441 MYL10Q9BUA6 226 aa4.9□□□□□ -1.63
SMCHD1-209ENST00000583441 MS4A5Q9H3V2 200 aa4.9□□□□□ -1.63
SMCHD1-209ENST00000583441 SERHL2Q9H4I8 314 aa4.9□□□□□ -1.63
SMCHD1-209ENST00000583441 DNAJC28Q9NX36 388 aa4.9□□□□□ -1.63
SMCHD1-209ENST00000583441 ZNF180Q9UJW8 692 aa4.9□□□□□ -1.63
SMCHD1-209ENST00000583441 PNMA8BQ9ULN7 279 aaPredicted RBP4.9□□□□□ -1.63
SMCHD1-209ENST00000583441 ANKRD6Q9Y2G4 727 aa4.9□□□□□ -1.63
SMCHD1-209ENST00000583441 PPP2R3BQ9Y5P8 575 aa4.9□□□□□ -1.63
SMCHD1-209ENST00000583441 GOLGA6CA6NDK9 693 aa4.89□□□□□ -1.63
SMCHD1-209ENST00000583441 GOLGA6BA6NDN3 693 aa4.89□□□□□ -1.63
SMCHD1-209ENST00000583441 GRXCR1A8MXD5 290 aa4.89□□□□□ -1.63
SMCHD1-209ENST00000583441 KIF3BO15066 747 aa4.89□□□□□ -1.63
SMCHD1-209ENST00000583441 XPOTO43592 962 aaKnown RBP4.89□□□□□ -1.63
SMCHD1-209ENST00000583441 RECQL4O94761 1208 aa4.89□□□□□ -1.63
SMCHD1-209ENST00000583441 APOL3O95236 402 aa4.89□□□□□ -1.63
SMCHD1-209ENST00000583441 GOLGA6DP0CG33 693 aa4.89□□□□□ -1.63
SMCHD1-209ENST00000583441 ZSCAN20P17040 1043 aaPredicted RBP4.89□□□□□ -1.63
SMCHD1-209ENST00000583441 TYRP1P17643 537 aa4.89□□□□□ -1.63
SMCHD1-209ENST00000583441 MC4RP32245 332 aa4.89□□□□□ -1.63
SMCHD1-209ENST00000583441 GPR15P49685 360 aa4.89□□□□□ -1.63
SMCHD1-209ENST00000583441 HLTFQ14527 1009 aaKnown RBP eCLIP4.89□□□□□ -1.63
SMCHD1-209ENST00000583441 MYBPC3Q14896 1274 aa4.89□□□□□ -1.63
SMCHD1-209ENST00000583441 CLUL1Q15846 466 aa4.89□□□□□ -1.63
SMCHD1-209ENST00000583441 FAM102BQ5T8I3 360 aa4.89□□□□□ -1.63
SMCHD1-209ENST00000583441 EFCAB2Q5VUJ9 269 aa4.89□□□□□ -1.63
SMCHD1-209ENST00000583441 RAVER1Q8IY67 606 aaKnown RBP4.89□□□□□ -1.63
SMCHD1-209ENST00000583441 TCEAL8Q8IYN2 117 aa4.89□□□□□ -1.63
SMCHD1-209ENST00000583441 CPA6Q8N4T0 437 aa4.89□□□□□ -1.63
SMCHD1-209ENST00000583441 PAWRQ96IZ0 340 aaKnown RBP4.89□□□□□ -1.63
SMCHD1-209ENST00000583441 KRTAP4-4Q9BYR3 166 aa4.89□□□□□ -1.63
SMCHD1-209ENST00000583441 WDR11Q9BZH6 1224 aa4.89□□□□□ -1.63
SMCHD1-209ENST00000583441 OR10A5Q9H207 317 aa4.89□□□□□ -1.63
SMCHD1-209ENST00000583441 UCKL1Q9NWZ5 548 aa4.89□□□□□ -1.63
SMCHD1-209ENST00000583441 GOLGA6AQ9NYA3 693 aa4.89□□□□□ -1.63
SMCHD1-209ENST00000583441 GPR45Q9Y5Y3 372 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms