RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 TMEM132AQ24JP5 1023 aa22.59■■□□□ 1.21
SHMT1-209ENST00000582653 OTOP3Q7RTS5 596 aa22.59■■□□□ 1.21
SHMT1-209ENST00000582653 HDAC7Q8WUI4 952 aa22.59■■□□□ 1.21
SHMT1-209ENST00000582653 RHOBTB2Q9BYZ6 727 aa22.59■■□□□ 1.21
SHMT1-209ENST00000582653 GPR62Q9BZJ7 368 aa22.59■■□□□ 1.21
SHMT1-209ENST00000582653 UPF2Q9HAU5 1272 aaKnown RBP22.59■■□□□ 1.21
SHMT1-209ENST00000582653 CACNG4Q9UBN1 327 aa22.59■■□□□ 1.21
SHMT1-209ENST00000582653 KIF3AQ9Y496 699 aa22.59■■□□□ 1.21
SHMT1-209ENST00000582653 MYO10Q9HD67 2058 aa22.59■■□□□ 1.21
SHMT1-209ENST00000582653 ASGR2P07307 311 aa22.58■■□□□ 1.21
SHMT1-209ENST00000582653 USP41Q3LFD5 358 aa22.58■■□□□ 1.21
SHMT1-209ENST00000582653 ELMSAN1Q6PJG2 1045 aa22.58■■□□□ 1.21
SHMT1-209ENST00000582653 DTHD1Q6ZMT9 781 aa22.58■■□□□ 1.21
SHMT1-209ENST00000582653 CCDC149Q6ZUS6 474 aa22.58■■□□□ 1.21
SHMT1-209ENST00000582653 RAB34Q9BZG1 259 aa22.58■■□□□ 1.21
SHMT1-209ENST00000582653 CXCL16Q9H2A7 254 aa22.58■■□□□ 1.21
SHMT1-209ENST00000582653 MAN1C1Q9NR34 630 aa22.58■■□□□ 1.21
SHMT1-209ENST00000582653 SNTG2Q9NY99 539 aa22.58■■□□□ 1.21
SHMT1-209ENST00000582653 ADAM28Q9UKQ2 775 aa22.58■■□□□ 1.21
SHMT1-209ENST00000582653 CCDC195A0A1B0GUA6 201 aa22.57■■□□□ 1.2
SHMT1-209ENST00000582653 LAD1O00515 517 aa22.57■■□□□ 1.2
SHMT1-209ENST00000582653 ACKR2O00590 384 aa22.57■■□□□ 1.2
SHMT1-209ENST00000582653 N4BP3O15049 544 aa22.57■■□□□ 1.2
SHMT1-209ENST00000582653 TADA2AO75478 443 aa22.57■■□□□ 1.2
SHMT1-209ENST00000582653 GLUD1P00367 558 aa22.57■■□□□ 1.2
SHMT1-209ENST00000582653 PRPHP41219 470 aa22.57■■□□□ 1.2
SHMT1-209ENST00000582653 NUBP1P53384 320 aa22.57■■□□□ 1.2
SHMT1-209ENST00000582653 VCPP55072 806 aaKnown RBP22.57■■□□□ 1.2
SHMT1-209ENST00000582653 TCF15Q12870 199 aa22.57■■□□□ 1.2
SHMT1-209ENST00000582653 PPP2R5AQ15172 486 aa22.57■■□□□ 1.2
SHMT1-209ENST00000582653 KRT79Q5XKE5 535 aa22.57■■□□□ 1.2
SHMT1-209ENST00000582653 EEF1DP3Q658K8 133 aa22.57■■□□□ 1.2
SHMT1-209ENST00000582653 FUT10Q6P4F1 479 aa22.57■■□□□ 1.2
SHMT1-209ENST00000582653 B3GALT6Q96L58 329 aa22.57■■□□□ 1.2
SHMT1-209ENST00000582653 IFT74Q96LB3 600 aa22.57■■□□□ 1.2
SHMT1-209ENST00000582653 MMTAG2Q9BU76 263 aaKnown RBP22.57■■□□□ 1.2
SHMT1-209ENST00000582653 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP22.57■■□□□ 1.2
SHMT1-209ENST00000582653 FNIP2Q9P278 1114 aa22.57■■□□□ 1.2
SHMT1-209ENST00000582653 DNM3Q9UQ16 869 aa22.57■■□□□ 1.2
SHMT1-209ENST00000582653 H3BQV1 296 aa22.56■■□□□ 1.2
SHMT1-209ENST00000582653 PAPLNO95428 1278 aa22.56■■□□□ 1.2
SHMT1-209ENST00000582653 PDGFBP01127 241 aaPredicted RBP22.56■■□□□ 1.2
SHMT1-209ENST00000582653 RILPL1Q5EBL4 403 aa22.56■■□□□ 1.2
SHMT1-209ENST00000582653 KCNK18Q7Z418 384 aa22.56■■□□□ 1.2
SHMT1-209ENST00000582653 KIFAP3Q92845 792 aa22.56■■□□□ 1.2
SHMT1-209ENST00000582653 TBC1D32Q96NH3 1257 aa22.56■■□□□ 1.2
SHMT1-209ENST00000582653 PAAF1Q9BRP4 392 aa22.56■■□□□ 1.2
SHMT1-209ENST00000582653 PLEKHA4Q9H4M7 779 aa22.56■■□□□ 1.2
SHMT1-209ENST00000582653 STK24Q9Y6E0 443 aa22.56■■□□□ 1.2
SHMT1-209ENST00000582653 TDRD15B5MCY1 1934 aaKnown RBP22.56■■□□□ 1.2
SHMT1-209ENST00000582653 MYBP10242 640 aa22.55■■□□□ 1.2
SHMT1-209ENST00000582653 TUSC3Q13454 348 aa22.55■■□□□ 1.2
SHMT1-209ENST00000582653 HSP90AA2PQ14568 343 aaPredicted RBP22.55■■□□□ 1.2
SHMT1-209ENST00000582653 ZRSR1Q15695 479 aaKnown RBP22.55■■□□□ 1.2
SHMT1-209ENST00000582653 NT5DC1Q5TFE4 455 aa22.55■■□□□ 1.2
SHMT1-209ENST00000582653 LILRA6Q6PI73 481 aa22.55■■□□□ 1.2
SHMT1-209ENST00000582653 PALB2Q86YC2 1186 aa22.55■■□□□ 1.2
SHMT1-209ENST00000582653 IRF2BPLQ9H1B7 796 aa22.55■■□□□ 1.2
SHMT1-209ENST00000582653 SMOC2Q9H3U7 446 aa22.55■■□□□ 1.2
SHMT1-209ENST00000582653 WDR6Q9NNW5 1121 aaKnown RBP22.55■■□□□ 1.2
SHMT1-209ENST00000582653 PTGESO14684 152 aa22.54■■□□□ 1.2
SHMT1-209ENST00000582653 RECQL4O94761 1208 aa22.54■■□□□ 1.2
SHMT1-209ENST00000582653 THP07101 528 aa22.54■■□□□ 1.2
SHMT1-209ENST00000582653 EFNA5P52803 228 aa22.54■■□□□ 1.2
SHMT1-209ENST00000582653 PEX3P56589 373 aa22.54■■□□□ 1.2
SHMT1-209ENST00000582653 ATP2C1P98194 919 aaPredicted RBP22.54■■□□□ 1.2
SHMT1-209ENST00000582653 DAW1Q8N136 415 aa22.54■■□□□ 1.2
SHMT1-209ENST00000582653 PLIN2Q99541 437 aa22.54■■□□□ 1.2
SHMT1-209ENST00000582653 ADPGKQ9BRR6 497 aa22.54■■□□□ 1.2
SHMT1-209ENST00000582653 RUSC1Q9BVN2 902 aa22.54■■□□□ 1.2
SHMT1-209ENST00000582653 SMC3Q9UQE7 1217 aa22.54■■□□□ 1.2
SHMT1-209ENST00000582653 GDAQ9Y2T3 454 aa22.54■■□□□ 1.2
SHMT1-209ENST00000582653 CASTOR2A6NHX0 329 aa22.53■■□□□ 1.2
SHMT1-209ENST00000582653 CCDC169A6NNP5 214 aa22.53■■□□□ 1.2
SHMT1-209ENST00000582653 K7ERI5 159 aa22.53■■□□□ 1.2
SHMT1-209ENST00000582653 TGM5O43548 720 aa22.53■■□□□ 1.2
SHMT1-209ENST00000582653 HIP1RO75146 1068 aa22.53■■□□□ 1.2
SHMT1-209ENST00000582653 SPATA31D3P0C874 917 aa22.53■■□□□ 1.2
SHMT1-209ENST00000582653 MCM2P49736 904 aa22.53■■□□□ 1.2
SHMT1-209ENST00000582653 CREMQ03060 361 aa22.53■■□□□ 1.2
SHMT1-209ENST00000582653 TDGQ13569 410 aa22.53■■□□□ 1.2
SHMT1-209ENST00000582653 RINT1Q6NUQ1 792 aa22.53■■□□□ 1.2
SHMT1-209ENST00000582653 SPATA31D4Q6ZUB0 917 aa22.53■■□□□ 1.2
SHMT1-209ENST00000582653 RIN2Q8WYP3 895 aaPredicted RBP22.53■■□□□ 1.2
SHMT1-209ENST00000582653 NT5C3AQ9H0P0 336 aa22.53■■□□□ 1.2
SHMT1-209ENST00000582653 KCNK12Q9HB15 430 aa22.53■■□□□ 1.2
SHMT1-209ENST00000582653 PIEZO1Q92508 2521 aa22.52■■□□□ 1.2
SHMT1-209ENST00000582653 VWA3AA6NCI4 1184 aa22.52■■□□□ 1.2
SHMT1-209ENST00000582653 SFI1A8K8P3 1242 aa22.52■■□□□ 1.2
SHMT1-209ENST00000582653 RFPL2O75678 378 aa22.52■■□□□ 1.2
SHMT1-209ENST00000582653 NPTX2P47972 431 aa22.52■■□□□ 1.2
SHMT1-209ENST00000582653 NAB2Q15742 525 aa22.52■■□□□ 1.2
SHMT1-209ENST00000582653 ATF7IP2Q5U623 682 aa22.52■■□□□ 1.2
SHMT1-209ENST00000582653 C1orf186Q6ZWK4 172 aa22.52■■□□□ 1.2
SHMT1-209ENST00000582653 HASPINQ8TF76 798 aa22.52■■□□□ 1.2
SHMT1-209ENST00000582653 STAMQ92783 540 aa22.52■■□□□ 1.2
SHMT1-209ENST00000582653 PNMA5Q96PV4 448 aa22.52■■□□□ 1.2
SHMT1-209ENST00000582653 PHOX2BQ99453 314 aa22.52■■□□□ 1.2
SHMT1-209ENST00000582653 IGSF9Q9P2J2 1179 aa22.52■■□□□ 1.2
SHMT1-209ENST00000582653 SF3B1O75533 1304 aaKnown RBP eCLIP22.52■■□□□ 1.28e-11■■■■■ 206.8
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms