RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 CCDC94Q9BW85 323 aaPredicted RBP11.68□□□□□ -0.54
SS18-213ENST00000579640 IFIH1Q9BYX4 1025 aaKnown RBP11.68□□□□□ -0.54
SS18-213ENST00000579640 TRIM5Q9C035 493 aa11.68□□□□□ -0.54
SS18-213ENST00000579640 TAB2Q9NYJ8 693 aa11.68□□□□□ -0.54
SS18-213ENST00000579640 RBAKQ9NYW8 714 aaPredicted RBP11.68□□□□□ -0.54
SS18-213ENST00000579640 A0A1B0GTH6 734 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 CXCL10P02778 98 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 STAG3L1P0CL83 205 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 SKIP12755 728 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 VAMP7P51809 220 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 PSMD6Q15008 389 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 VWA3BQ502W6 1294 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 UBXN11Q5T124 520 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 CD302Q8IX05 232 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 THNSL1Q8IYQ7 743 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 ZSWIM2Q8NEG5 633 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 SEPT8Q92599 483 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 PPP1R12CQ9BZL4 782 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 WNT8AQ9H1J5 351 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 RPF1Q9H9Y2 349 aaKnown RBP11.67□□□□□ -0.54
SS18-213ENST00000579640 IFNKQ9P0W0 207 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 UMODL1Q5DID0 1318 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 LGALS16A8MUM7 142 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 NBNO60934 754 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 IL18RAPO95256 599 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 TIMP1P01033 207 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 AFPP02771 609 aaKnown RBP11.67□□□□□ -0.54
SS18-213ENST00000579640 CYP2C18P33260 490 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 PLEKHG4Q58EX7 1191 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 DCAF17Q5H9S7 520 aaPredicted RBP11.67□□□□□ -0.54
SS18-213ENST00000579640 ZBTB41Q5SVQ8 909 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 FKBP15Q5T1M5 1219 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 TCERG1LQ5VWI1 586 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 PARD3BQ8TEW8 1205 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 SLC35C1Q96A29 364 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 MRFAP1L1Q96HT8 127 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 ACAP3Q96P50 834 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 FNBP1Q96RU3 617 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 HTATIP2Q9BUP3 242 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 EIF2AQ9BY44 585 aaKnown RBP11.67□□□□□ -0.54
SS18-213ENST00000579640 OSBPL7Q9BZF2 842 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 VPS16Q9H269 839 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 TMX1Q9H3N1 280 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 NDST4Q9H3R1 872 aa11.67□□□□□ -0.54
SS18-213ENST00000579640 RTN4Q9NQC3 1192 aaKnown RBP11.67□□□□□ -0.54
SS18-213ENST00000579640 AP5Z1O43299 807 aa11.66□□□□□ -0.54
SS18-213ENST00000579640 N4BP1O75113 896 aaKnown RBP11.66□□□□□ -0.54
SS18-213ENST00000579640 ZNF623O75123 536 aa11.66□□□□□ -0.54
SS18-213ENST00000579640 GTF2H1P32780 548 aa11.66□□□□□ -0.54
SS18-213ENST00000579640 TNFSF9P41273 254 aa11.66□□□□□ -0.54
SS18-213ENST00000579640 ZNF75DP51815 510 aa11.66□□□□□ -0.54
SS18-213ENST00000579640 AP3M2P53677 418 aa11.66□□□□□ -0.54
SS18-213ENST00000579640 YARSP54577 528 aaKnown RBP11.66□□□□□ -0.54
SS18-213ENST00000579640 CCL23P55773 120 aa11.66□□□□□ -0.54
SS18-213ENST00000579640 KCNH2Q12809 1159 aa11.66□□□□□ -0.54
SS18-213ENST00000579640 NR1I3Q14994 352 aa11.66□□□□□ -0.54
SS18-213ENST00000579640 MIIPQ5JXC2 388 aa11.66□□□□□ -0.54
SS18-213ENST00000579640 CEP120Q8N960 986 aa11.66□□□□□ -0.54
SS18-213ENST00000579640 NAP1L5Q96NT1 182 aaPredicted RBP11.66□□□□□ -0.54
SS18-213ENST00000579640 TSPAN18Q96SJ8 248 aa11.66□□□□□ -0.54
SS18-213ENST00000579640 XPO4Q9C0E2 1151 aaKnown RBP11.66□□□□□ -0.54
SS18-213ENST00000579640 ASB7Q9H672 318 aa11.66□□□□□ -0.54
SS18-213ENST00000579640 PLEKHA5Q9HAU0 1116 aa11.66□□□□□ -0.54
SS18-213ENST00000579640 PRDM5Q9NQX1 630 aaPredicted RBP11.66□□□□□ -0.54
SS18-213ENST00000579640 RGS18Q9NS28 235 aa11.66□□□□□ -0.54
SS18-213ENST00000579640 TOPORSQ9NS56 1045 aaPredicted RBP11.66□□□□□ -0.54
SS18-213ENST00000579640 C1orf112Q9NSG2 853 aa11.66□□□□□ -0.54
SS18-213ENST00000579640 FAM105AQ9NUU6 356 aa11.66□□□□□ -0.54
SS18-213ENST00000579640 PRKAG2Q9UGJ0 569 aa11.66□□□□□ -0.54
SS18-213ENST00000579640 PES1O00541 588 aaKnown RBP11.65□□□□□ -0.54
SS18-213ENST00000579640 PMM2O15305 246 aa11.65□□□□□ -0.54
SS18-213ENST00000579640 P4HA2O15460 535 aa11.65□□□□□ -0.54
SS18-213ENST00000579640 ADCY5O95622 1261 aa11.65□□□□□ -0.54
SS18-213ENST00000579640 RAG1P15918 1043 aa11.65□□□□□ -0.54
SS18-213ENST00000579640 OSTNP61366 133 aa11.65□□□□□ -0.54
SS18-213ENST00000579640 CLDN10P78369 228 aa11.65□□□□□ -0.54
SS18-213ENST00000579640 GPNMBQ14956 572 aa11.65□□□□□ -0.54
SS18-213ENST00000579640 ENOX2Q16206 610 aaKnown RBP11.65□□□□□ -0.54
SS18-213ENST00000579640 SEZ6Q53EL9 994 aa11.65□□□□□ -0.54
SS18-213ENST00000579640 MRPL10Q7Z7H8 261 aaKnown RBP11.65□□□□□ -0.54
SS18-213ENST00000579640 NT5DC4Q86YG4 428 aa11.65□□□□□ -0.54
SS18-213ENST00000579640 CCDC127Q96BQ5 260 aa11.65□□□□□ -0.54
SS18-213ENST00000579640 PGBD4Q96DM1 585 aa11.65□□□□□ -0.54
SS18-213ENST00000579640 SCLYQ96I15 445 aa11.65□□□□□ -0.54
SS18-213ENST00000579640 CGRRF1Q99675 332 aa11.65□□□□□ -0.54
SS18-213ENST00000579640 ADAM2Q99965 735 aa11.65□□□□□ -0.54
SS18-213ENST00000579640 IPPQ9Y573 584 aa11.65□□□□□ -0.54
SS18-213ENST00000579640 PCDHB2Q9Y5E7 798 aa11.65□□□□□ -0.54
SS18-213ENST00000579640 A0A0U1RQF3 1178 aa11.65□□□□□ -0.55
SS18-213ENST00000579640 GTPBP10A4D1E9 387 aaKnown RBP11.65□□□□□ -0.55
SS18-213ENST00000579640 TRIM43BA6NCK2 446 aa11.65□□□□□ -0.55
SS18-213ENST00000579640 LRRIQ3A6PVS8 624 aaPredicted RBP11.65□□□□□ -0.55
SS18-213ENST00000579640 MGEA5O60502 916 aa11.65□□□□□ -0.55
SS18-213ENST00000579640 PFKMP08237 780 aa11.65□□□□□ -0.55
SS18-213ENST00000579640 CXCL8P10145 99 aa11.65□□□□□ -0.55
SS18-213ENST00000579640 UBXN1Q04323 297 aa11.65□□□□□ -0.55
SS18-213ENST00000579640 CETN1Q12798 172 aa11.65□□□□□ -0.55
SS18-213ENST00000579640 MFSD5Q6N075 450 aa11.65□□□□□ -0.55
SS18-213ENST00000579640 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.65□□□□□ -0.55
SS18-213ENST00000579640 WDR49Q8IV35 697 aa11.65□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms