RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.56■□□□□ 0.4
SS18-211ENST00000578954 UMODL1Q5DID0 1318 aa17.55■□□□□ 0.4
SS18-211ENST00000578954 NBNO60934 754 aa17.55■□□□□ 0.4
SS18-211ENST00000578954 NPTXRO95502 500 aa17.55■□□□□ 0.4
SS18-211ENST00000578954 CXCL10P02778 98 aa17.55■□□□□ 0.4
SS18-211ENST00000578954 TPM2P07951 284 aa17.55■□□□□ 0.4
SS18-211ENST00000578954 HARSP12081 509 aaKnown RBP17.55■□□□□ 0.4
SS18-211ENST00000578954 KRT13P13646 458 aa17.55■□□□□ 0.4
SS18-211ENST00000578954 TNFSF9P41273 254 aa17.55■□□□□ 0.4
SS18-211ENST00000578954 ACOT2P49753 483 aa17.55■□□□□ 0.4
SS18-211ENST00000578954 VAMP7P51809 220 aa17.55■□□□□ 0.4
SS18-211ENST00000578954 PLCB2Q00722 1185 aa17.55■□□□□ 0.4
SS18-211ENST00000578954 NFX1Q12986 1120 aaKnown RBP17.55■□□□□ 0.4
SS18-211ENST00000578954 C1orf220Q5T0J3 134 aa17.55■□□□□ 0.4
SS18-211ENST00000578954 CEP120Q8N960 986 aa17.55■□□□□ 0.4
SS18-211ENST00000578954 RDH13Q8NBN7 331 aa17.55■□□□□ 0.4
SS18-211ENST00000578954 EIF2AQ9BY44 585 aaKnown RBP17.55■□□□□ 0.4
SS18-211ENST00000578954 VPS16Q9H269 839 aa17.55■□□□□ 0.4
SS18-211ENST00000578954 TMX1Q9H3N1 280 aa17.55■□□□□ 0.4
SS18-211ENST00000578954 NDST4Q9H3R1 872 aa17.55■□□□□ 0.4
SS18-211ENST00000578954 RBAKQ9NYW8 714 aaPredicted RBP17.55■□□□□ 0.4
SS18-211ENST00000578954 KIAA0355O15063 1070 aa17.54■□□□□ 0.4
SS18-211ENST00000578954 PMM2O15305 246 aa17.54■□□□□ 0.4
SS18-211ENST00000578954 ADCY5O95622 1261 aa17.54■□□□□ 0.4
SS18-211ENST00000578954 AFPP02771 609 aaKnown RBP17.54■□□□□ 0.4
SS18-211ENST00000578954 TPM3P06753 285 aa17.54■□□□□ 0.4
SS18-211ENST00000578954 STAG3L1P0CL83 205 aa17.54■□□□□ 0.4
SS18-211ENST00000578954 CDC25BP30305 580 aa17.54■□□□□ 0.4
SS18-211ENST00000578954 PBX1P40424 430 aa17.54■□□□□ 0.4
SS18-211ENST00000578954 ENOX2Q16206 610 aaKnown RBP17.54■□□□□ 0.4
SS18-211ENST00000578954 PLEKHG4Q58EX7 1191 aa17.54■□□□□ 0.4
SS18-211ENST00000578954 USP37Q86T82 979 aa17.54■□□□□ 0.4
SS18-211ENST00000578954 CREBRFQ8IUR6 639 aa17.54■□□□□ 0.4
SS18-211ENST00000578954 THNSL1Q8IYQ7 743 aa17.54■□□□□ 0.4
SS18-211ENST00000578954 TMEM39AQ9NV64 488 aa17.54■□□□□ 0.4
SS18-211ENST00000578954 RALGAPA2Q2PPJ7 1873 aa17.53■□□□□ 0.4
SS18-211ENST00000578954 A0A1W2PQC6 194 aa17.53■□□□□ 0.4
SS18-211ENST00000578954 LRRIQ3A6PVS8 624 aaPredicted RBP17.53■□□□□ 0.4
SS18-211ENST00000578954 MEFVO15553 781 aaPredicted RBP17.53■□□□□ 0.4
SS18-211ENST00000578954 TEX33O43247 280 aa17.53■□□□□ 0.4
SS18-211ENST00000578954 MGEA5O60502 916 aa17.53■□□□□ 0.4
SS18-211ENST00000578954 ZNF623O75123 536 aa17.53■□□□□ 0.4
SS18-211ENST00000578954 ZSCAN20P17040 1043 aaPredicted RBP17.53■□□□□ 0.4
SS18-211ENST00000578954 GTF2H1P32780 548 aa17.53■□□□□ 0.4
SS18-211ENST00000578954 RAB27AP51159 221 aa17.53■□□□□ 0.4
SS18-211ENST00000578954 WNT7BP56706 349 aa17.53■□□□□ 0.4
SS18-211ENST00000578954 KCNH2Q12809 1159 aa17.53■□□□□ 0.4
SS18-211ENST00000578954 SURF1Q15526 300 aa17.53■□□□□ 0.4
SS18-211ENST00000578954 SEZ6Q53EL9 994 aa17.53■□□□□ 0.4
SS18-211ENST00000578954 DCAF17Q5H9S7 520 aaPredicted RBP17.53■□□□□ 0.4
SS18-211ENST00000578954 TWF2Q6IBS0 349 aaKnown RBP17.53■□□□□ 0.4
SS18-211ENST00000578954 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.53■□□□□ 0.4
SS18-211ENST00000578954 TMEM192Q8IY95 271 aa17.53■□□□□ 0.4
SS18-211ENST00000578954 ERGIC2Q96RQ1 377 aa17.53■□□□□ 0.4
SS18-211ENST00000578954 CCDC94Q9BW85 323 aaPredicted RBP17.53■□□□□ 0.4
SS18-211ENST00000578954 IFIH1Q9BYX4 1025 aaKnown RBP17.53■□□□□ 0.4
SS18-211ENST00000578954 ALPK3Q96L96 1907 aa17.53■□□□□ 0.4
SS18-211ENST00000578954 ANK1P16157 1881 aa17.52■□□□□ 0.4
SS18-211ENST00000578954 TTC26A0AVF1 554 aa17.52■□□□□ 0.4
SS18-211ENST00000578954 GTPBP10A4D1E9 387 aaKnown RBP17.52■□□□□ 0.4
SS18-211ENST00000578954 P4HA2O15460 535 aa17.52■□□□□ 0.4
SS18-211ENST00000578954 STX10O60499 249 aa17.52■□□□□ 0.4
SS18-211ENST00000578954 IL18RAPO95256 599 aa17.52■□□□□ 0.4
SS18-211ENST00000578954 TRIM49P0CI25 452 aa17.52■□□□□ 0.4
SS18-211ENST00000578954 TRIM49CP0CI26 452 aa17.52■□□□□ 0.4
SS18-211ENST00000578954 RFC2P35250 354 aa17.52■□□□□ 0.4
SS18-211ENST00000578954 DLG4P78352 724 aa17.52■□□□□ 0.4
SS18-211ENST00000578954 MRPL10Q7Z7H8 261 aaKnown RBP17.52■□□□□ 0.4
SS18-211ENST00000578954 CD302Q8IX05 232 aa17.52■□□□□ 0.4
SS18-211ENST00000578954 SMG8Q8ND04 991 aaKnown RBP17.52■□□□□ 0.4
SS18-211ENST00000578954 APBB2Q92870 758 aa17.52■□□□□ 0.4
SS18-211ENST00000578954 PDLIM2Q96JY6 352 aa17.52■□□□□ 0.4
SS18-211ENST00000578954 ACAP3Q96P50 834 aa17.52■□□□□ 0.4
SS18-211ENST00000578954 CGRRF1Q99675 332 aa17.52■□□□□ 0.4
SS18-211ENST00000578954 FTHL17Q9BXU8 183 aa17.52■□□□□ 0.4
SS18-211ENST00000578954 NXF3Q9H4D5 531 aaKnown RBP17.52■□□□□ 0.4
SS18-211ENST00000578954 ASB7Q9H672 318 aa17.52■□□□□ 0.4
SS18-211ENST00000578954 RPF1Q9H9Y2 349 aaKnown RBP17.52■□□□□ 0.4
SS18-211ENST00000578954 PLEKHA5Q9HAU0 1116 aa17.52■□□□□ 0.4
SS18-211ENST00000578954 FAM105AQ9NUU6 356 aa17.52■□□□□ 0.4
SS18-211ENST00000578954 IPPQ9Y573 584 aa17.52■□□□□ 0.4
SS18-211ENST00000578954 N4BP1O75113 896 aaKnown RBP17.51■□□□□ 0.39
SS18-211ENST00000578954 CXCL8P10145 99 aa17.51■□□□□ 0.39
SS18-211ENST00000578954 CYP2C18P33260 490 aa17.51■□□□□ 0.39
SS18-211ENST00000578954 FMO5P49326 533 aa17.51■□□□□ 0.39
SS18-211ENST00000578954 PPP3CAQ08209 521 aa17.51■□□□□ 0.39
SS18-211ENST00000578954 SLC10A6Q3KNW5 377 aa17.51■□□□□ 0.39
SS18-211ENST00000578954 XKR4Q5GH76 650 aa17.51■□□□□ 0.39
SS18-211ENST00000578954 FKBP15Q5T1M5 1219 aa17.51■□□□□ 0.39
SS18-211ENST00000578954 COL13A1Q5TAT6 717 aaPredicted RBP17.51■□□□□ 0.39
SS18-211ENST00000578954 TCERG1LQ5VWI1 586 aa17.51■□□□□ 0.39
SS18-211ENST00000578954 C15orf39Q6ZRI6 1047 aa17.51■□□□□ 0.39
SS18-211ENST00000578954 WDR49Q8IV35 697 aa17.51■□□□□ 0.39
SS18-211ENST00000578954 VSTM4Q8IW00 320 aa17.51■□□□□ 0.39
SS18-211ENST00000578954 ABHD8Q96I13 439 aa17.51■□□□□ 0.39
SS18-211ENST00000578954 SNX27Q96L92 541 aa17.51■□□□□ 0.39
SS18-211ENST00000578954 PPP1R12CQ9BZL4 782 aa17.51■□□□□ 0.39
SS18-211ENST00000578954 TRIM6Q9C030 488 aaPredicted RBP17.51■□□□□ 0.39
SS18-211ENST00000578954 PDE11AQ9HCR9 933 aa17.51■□□□□ 0.39
SS18-211ENST00000578954 RGS18Q9NS28 235 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms