RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 FLNBO75369 2602 aaKnown RBP6.75□□□□□ -1.33
VPS53-219ENST00000576019 TCRBV5S4A2TA0A5A2 114 aa6.75□□□□□ -1.33
VPS53-219ENST00000576019 MEGF11A6BM72 1044 aa6.75□□□□□ -1.33
VPS53-219ENST00000576019 RRN3P2A6NIE6 340 aa6.75□□□□□ -1.33
VPS53-219ENST00000576019 LPLP06858 475 aa6.75□□□□□ -1.33
VPS53-219ENST00000576019 COL6A2P12110 1019 aa6.75□□□□□ -1.33
VPS53-219ENST00000576019 BCL6P41182 706 aa6.75□□□□□ -1.33
VPS53-219ENST00000576019 AGFG1P52594 562 aaKnown RBP6.75□□□□□ -1.33
VPS53-219ENST00000576019 LAPTM5Q13571 262 aa6.75□□□□□ -1.33
VPS53-219ENST00000576019 PDE1CQ14123 709 aaPredicted RBP6.75□□□□□ -1.33
VPS53-219ENST00000576019 POLD3Q15054 466 aaPredicted RBP6.75□□□□□ -1.33
VPS53-219ENST00000576019 HSF5Q4G112 596 aaPredicted RBP6.75□□□□□ -1.33
VPS53-219ENST00000576019 DAAM2Q86T65 1068 aa6.75□□□□□ -1.33
VPS53-219ENST00000576019 NBPF11Q86T75 865 aa6.75□□□□□ -1.33
VPS53-219ENST00000576019 ANKRD18AQ8IVF6 992 aa6.75□□□□□ -1.33
VPS53-219ENST00000576019 GOLGA6L1Q8N7Z2 621 aa6.75□□□□□ -1.33
VPS53-219ENST00000576019 USP38Q8NB14 1042 aa6.75□□□□□ -1.33
VPS53-219ENST00000576019 MYLIPQ8WY64 445 aa6.75□□□□□ -1.33
VPS53-219ENST00000576019 MMP19Q99542 508 aa6.75□□□□□ -1.33
VPS53-219ENST00000576019 ADARB2Q9NS39 739 aaKnown RBP6.75□□□□□ -1.33
VPS53-219ENST00000576019 TPCN1Q9ULQ1 816 aa6.75□□□□□ -1.33
VPS53-219ENST00000576019 MAGED2Q9UNF1 606 aaPredicted RBP6.75□□□□□ -1.33
VPS53-219ENST00000576019 NSFL1CQ9UNZ2 370 aaKnown RBP6.75□□□□□ -1.33
VPS53-219ENST00000576019 SLC45A1Q9Y2W3 748 aa6.75□□□□□ -1.33
VPS53-219ENST00000576019 ZNF831Q5JPB2 1677 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 ANKRD26Q9UPS8 1709 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 A0A1B0GVC2 190 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 MAN2B1O00754 1011 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 RPS6KA4O75676 772 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 CBX7O95931 251 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 EPXP11678 715 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 FOSL2P15408 326 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 VAV1P15498 845 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 SMARCA1P28370 1054 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 TECP42680 631 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 STT3AP46977 705 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 RXRGP48443 463 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 SLC16A1P53985 500 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 EIF5P55010 431 aaKnown RBP6.74□□□□□ -1.33
VPS53-219ENST00000576019 MANFP55145 182 aaKnown RBP6.74□□□□□ -1.33
VPS53-219ENST00000576019 TMEM132BQ14DG7 1078 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 PRR16Q569H4 304 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 MBNL2Q5VZF2 373 aaKnown RBP6.74□□□□□ -1.33
VPS53-219ENST00000576019 CC2D1AQ6P1N0 951 aaPredicted RBP6.74□□□□□ -1.33
VPS53-219ENST00000576019 FDX2Q6P4F2 183 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 APOA5Q6Q788 366 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 C16orf54Q6UWD8 224 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 LMBR1LQ6UX01 489 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 ZZZ3Q8IYH5 903 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 ZSCAN18Q8TBC5 510 aaPredicted RBP6.74□□□□□ -1.33
VPS53-219ENST00000576019 PHKBQ93100 1093 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 UBXN10Q96LJ8 280 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 NT5C1BQ96P26 610 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 PPP1R16BQ96T49 567 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 CENPOQ9BU64 300 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 ACSS2Q9NR19 701 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 VPS45Q9NRW7 570 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 SRP68Q9UHB9 627 aaKnown RBP6.74□□□□□ -1.33
VPS53-219ENST00000576019 KCNH3Q9ULD8 1083 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 CRYL1Q9Y2S2 319 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 ZNF281Q9Y2X9 895 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 XIRP2A4UGR9 3374 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 ANKRD31Q8N7Z5 1873 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 SSC5DA1L4H1 1573 aa6.74□□□□□ -1.33
VPS53-219ENST00000576019 ZNF646O15015 1829 aaPredicted RBP6.73□□□□□ -1.33
VPS53-219ENST00000576019 TPRP12270 2363 aaKnown RBP6.73□□□□□ -1.33
VPS53-219ENST00000576019 KDRP35968 1356 aa6.73□□□□□ -1.33
VPS53-219ENST00000576019 POM121BA6NF01 834 aa6.73□□□□□ -1.33
VPS53-219ENST00000576019 CCDC154A6NI56 674 aa6.73□□□□□ -1.33
VPS53-219ENST00000576019 EYA2O00167 538 aa6.73□□□□□ -1.33
VPS53-219ENST00000576019 NKRFO15226 690 aaKnown RBP eCLIP6.73□□□□□ -1.33
VPS53-219ENST00000576019 IFIT1P09914 478 aaKnown RBP6.73□□□□□ -1.33
VPS53-219ENST00000576019 CYP7A1P22680 504 aa6.73□□□□□ -1.33
VPS53-219ENST00000576019 SLC5A3P53794 718 aa6.73□□□□□ -1.33
VPS53-219ENST00000576019 RPL11P62913 178 aaKnown RBP6.73□□□□□ -1.33
VPS53-219ENST00000576019 CCT2P78371 535 aaKnown RBP6.73□□□□□ -1.33
VPS53-219ENST00000576019 PMS2P11Q13670 270 aa6.73□□□□□ -1.33
VPS53-219ENST00000576019 STARD3Q14849 445 aa6.73□□□□□ -1.33
VPS53-219ENST00000576019 SLC9C1Q4G0N8 1177 aa6.73□□□□□ -1.33
VPS53-219ENST00000576019 RTP2Q5QGT7 225 aa6.73□□□□□ -1.33
VPS53-219ENST00000576019 INTS11Q5TA45 600 aaKnown RBP6.73□□□□□ -1.33
VPS53-219ENST00000576019 MZT2BQ6NZ67 158 aa6.73□□□□□ -1.33
VPS53-219ENST00000576019 CYP26C1Q6V0L0 522 aa6.73□□□□□ -1.33
VPS53-219ENST00000576019 PDZD4Q76G19 769 aaPredicted RBP6.73□□□□□ -1.33
VPS53-219ENST00000576019 MAEAQ7L5Y9 396 aa6.73□□□□□ -1.33
VPS53-219ENST00000576019 NLRP10Q86W26 655 aa6.73□□□□□ -1.33
VPS53-219ENST00000576019 TOP6BLQ8N6T0 577 aa6.73□□□□□ -1.33
VPS53-219ENST00000576019 GIMAP8Q8ND71 665 aaPredicted RBP6.73□□□□□ -1.33
VPS53-219ENST00000576019 ZNF622Q969S3 477 aaKnown RBP eCLIP6.73□□□□□ -1.331e-8■■■□□ 18.7
VPS53-219ENST00000576019 TCTN2Q96GX1 697 aa6.73□□□□□ -1.33
VPS53-219ENST00000576019 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.73□□□□□ -1.333e-7■■■■□ 22.8
VPS53-219ENST00000576019 OSBPL5Q9H0X9 879 aaPredicted RBP6.73□□□□□ -1.33
VPS53-219ENST00000576019 KCNH6Q9H252 994 aa6.73□□□□□ -1.33
VPS53-219ENST00000576019 ITM2CQ9NQX7 267 aa6.73□□□□□ -1.33
VPS53-219ENST00000576019 PDP2Q9P2J9 529 aa6.73□□□□□ -1.33
VPS53-219ENST00000576019 LIMCH1Q9UPQ0 1083 aa6.73□□□□□ -1.33
VPS53-219ENST00000576019 TIMM13Q9Y5L4 95 aaPredicted RBP6.73□□□□□ -1.33
VPS53-219ENST00000576019 ZNF292O60281 2723 aa6.73□□□□□ -1.33
VPS53-219ENST00000576019 ASH1LQ9NR48 2969 aaKnown RBP6.72□□□□□ -1.33
VPS53-219ENST00000576019 SMIM22K7EJ46 135 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms