RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 GNAT2P19087 354 aa6.24□□□□□ -1.41
NUP88-208ENST00000574087 AKAP5P24588 427 aa6.24□□□□□ -1.41
NUP88-208ENST00000574087 ATP8B2P98198 1209 aa6.24□□□□□ -1.41
NUP88-208ENST00000574087 HHEXQ03014 270 aa6.24□□□□□ -1.41
NUP88-208ENST00000574087 IL10RAQ13651 578 aa6.24□□□□□ -1.41
NUP88-208ENST00000574087 UAP1L1Q3KQV9 507 aa6.24□□□□□ -1.41
NUP88-208ENST00000574087 RRP12Q5JTH9 1297 aaKnown RBP6.24□□□□□ -1.41
NUP88-208ENST00000574087 METTL24Q5JXM2 366 aa6.24□□□□□ -1.41
NUP88-208ENST00000574087 C1QL3Q5VWW1 255 aa6.24□□□□□ -1.41
NUP88-208ENST00000574087 ANKS6Q68DC2 871 aa6.24□□□□□ -1.41
NUP88-208ENST00000574087 MIGA2Q7L4E1 593 aa6.24□□□□□ -1.41
NUP88-208ENST00000574087 FAM83AQ86UY5 434 aa6.24□□□□□ -1.41
NUP88-208ENST00000574087 RHOT1Q8IXI2 618 aa6.24□□□□□ -1.41
NUP88-208ENST00000574087 PRR18Q8N4B5 295 aa6.24□□□□□ -1.41
NUP88-208ENST00000574087 FBXO18Q8NFZ0 1043 aa6.24□□□□□ -1.41
NUP88-208ENST00000574087 CASKIN2Q8WXE0 1202 aa6.24□□□□□ -1.41
NUP88-208ENST00000574087 JPH3Q8WXH2 748 aaPredicted RBP6.24□□□□□ -1.41
NUP88-208ENST00000574087 ST8SIA2Q92186 375 aa6.24□□□□□ -1.41
NUP88-208ENST00000574087 ADOQ96SZ5 270 aa6.24□□□□□ -1.41
NUP88-208ENST00000574087 SENP6Q9GZR1 1112 aaPredicted RBP6.24□□□□□ -1.41
NUP88-208ENST00000574087 EPC1Q9H2F5 836 aa6.24□□□□□ -1.41
NUP88-208ENST00000574087 LDAHQ9H6V9 325 aa6.24□□□□□ -1.41
NUP88-208ENST00000574087 PNMA8BQ9ULN7 279 aaPredicted RBP6.24□□□□□ -1.41
NUP88-208ENST00000574087 G3BP2Q9UN86 482 aaKnown RBP6.24□□□□□ -1.41
NUP88-208ENST00000574087 CAPN14A8MX76 684 aa6.23□□□□□ -1.41
NUP88-208ENST00000574087 B5MCH6 92 aa6.23□□□□□ -1.41
NUP88-208ENST00000574087 IPO13O94829 963 aaKnown RBP6.23□□□□□ -1.41
NUP88-208ENST00000574087 IL2RBP14784 551 aa6.23□□□□□ -1.41
NUP88-208ENST00000574087 ZNF20P17024 532 aa6.23□□□□□ -1.41
NUP88-208ENST00000574087 PDCP20941 246 aa6.23□□□□□ -1.41
NUP88-208ENST00000574087 FPR1P21462 350 aa6.23□□□□□ -1.41
NUP88-208ENST00000574087 PCSK1P29120 753 aa6.23□□□□□ -1.41
NUP88-208ENST00000574087 RABGGTBP53611 331 aa6.23□□□□□ -1.41
NUP88-208ENST00000574087 CDC42EP1Q00587 391 aa6.23□□□□□ -1.41
NUP88-208ENST00000574087 CDSNQ15517 529 aa6.23□□□□□ -1.41
NUP88-208ENST00000574087 CSRP2Q16527 193 aa6.23□□□□□ -1.41
NUP88-208ENST00000574087 HTR3DQ70Z44 454 aa6.23□□□□□ -1.41
NUP88-208ENST00000574087 XYLT1Q86Y38 959 aa6.23□□□□□ -1.41
NUP88-208ENST00000574087 ZGPATQ8N5A5 531 aaKnown RBP6.23□□□□□ -1.41
NUP88-208ENST00000574087 CCHCR1Q8TD31 782 aa6.23□□□□□ -1.41
NUP88-208ENST00000574087 STON2Q8WXE9 905 aa6.23□□□□□ -1.41
NUP88-208ENST00000574087 DVL3Q92997 716 aaPredicted RBP6.23□□□□□ -1.41
NUP88-208ENST00000574087 CPPED1Q9BRF8 314 aaPredicted RBP6.23□□□□□ -1.41
NUP88-208ENST00000574087 CPEB1Q9BZB8 566 aaKnown RBP6.23□□□□□ -1.41
NUP88-208ENST00000574087 METTL14Q9HCE5 456 aaKnown RBP6.23□□□□□ -1.41
NUP88-208ENST00000574087 KLHL42Q9P2K6 505 aa6.23□□□□□ -1.41
NUP88-208ENST00000574087 AJAP1Q9UKB5 411 aaPredicted RBP6.23□□□□□ -1.41
NUP88-208ENST00000574087 TESMINQ9Y4I5 508 aa6.23□□□□□ -1.41
NUP88-208ENST00000574087 PCDHB1Q9Y5F3 818 aa6.23□□□□□ -1.41
NUP88-208ENST00000574087 TBKBP1A7MCY6 615 aa6.22□□□□□ -1.41
NUP88-208ENST00000574087 CXorf49A8MYA2 514 aaPredicted RBP6.22□□□□□ -1.41
NUP88-208ENST00000574087 PJA2O43164 708 aa6.22□□□□□ -1.41
NUP88-208ENST00000574087 HIBADHP31937 336 aaKnown RBP6.22□□□□□ -1.41
NUP88-208ENST00000574087 DSC2Q02487 901 aa6.22□□□□□ -1.41
NUP88-208ENST00000574087 TARDBPQ13148 414 aaKnown RBP eCLIP6.22□□□□□ -1.41
NUP88-208ENST00000574087 MTM1Q13496 603 aa6.22□□□□□ -1.41
NUP88-208ENST00000574087 PRKD1Q15139 912 aaPredicted RBP6.22□□□□□ -1.41
NUP88-208ENST00000574087 LRRC41Q15345 812 aa6.22□□□□□ -1.41
NUP88-208ENST00000574087 BMT2Q1RMZ1 405 aa6.22□□□□□ -1.41
NUP88-208ENST00000574087 DCAF17Q5H9S7 520 aaPredicted RBP6.22□□□□□ -1.41
NUP88-208ENST00000574087 USP45Q70EL2 814 aa6.22□□□□□ -1.41
NUP88-208ENST00000574087 OR52N2Q8NGI0 321 aa6.22□□□□□ -1.41
NUP88-208ENST00000574087 SLC35B2Q8TB61 432 aa6.22□□□□□ -1.41
NUP88-208ENST00000574087 ATXN2LQ8WWM7 1075 aaKnown RBP6.22□□□□□ -1.41
NUP88-208ENST00000574087 KAT5Q92993 513 aa6.22□□□□□ -1.41
NUP88-208ENST00000574087 DMRTA2Q96SC8 542 aa6.22□□□□□ -1.41
NUP88-208ENST00000574087 TMEM140Q9NV12 185 aa6.22□□□□□ -1.41
NUP88-208ENST00000574087 MOCS1Q9NZB8 636 aa6.22□□□□□ -1.41
NUP88-208ENST00000574087 CFAP20Q9Y6A4 193 aaKnown RBP6.22□□□□□ -1.41
NUP88-208ENST00000574087 MYBBP1AQ9BQG0 1328 aaKnown RBP6.22□□□□□ -1.41
NUP88-208ENST00000574087 KRTAP23-1A1A580 65 aa6.21□□□□□ -1.42
NUP88-208ENST00000574087 KLRG2A4D1S0 409 aaPredicted RBP6.21□□□□□ -1.42
NUP88-208ENST00000574087 B8ZZF3 427 aa6.21□□□□□ -1.42
NUP88-208ENST00000574087 MUSKO15146 869 aa6.21□□□□□ -1.42
NUP88-208ENST00000574087 CYP27B1O15528 508 aa6.21□□□□□ -1.42
NUP88-208ENST00000574087 GPR32O75388 356 aa6.21□□□□□ -1.42
NUP88-208ENST00000574087 CT47B1P0C2W7 299 aaPredicted RBP6.21□□□□□ -1.42
NUP88-208ENST00000574087 HSP90B1P14625 803 aaKnown RBP6.21□□□□□ -1.42
NUP88-208ENST00000574087 DDCP20711 480 aa6.21□□□□□ -1.42
NUP88-208ENST00000574087 PTH1RQ03431 593 aa6.21□□□□□ -1.42
NUP88-208ENST00000574087 PPP2R5AQ15172 486 aa6.21□□□□□ -1.42
NUP88-208ENST00000574087 AFMIDQ63HM1 303 aa6.21□□□□□ -1.42
NUP88-208ENST00000574087 NAIF1Q69YI7 327 aaPredicted RBP6.21□□□□□ -1.42
NUP88-208ENST00000574087 OTUD7BQ6GQQ9 843 aa6.21□□□□□ -1.42
NUP88-208ENST00000574087 PPP4R3AQ6IN85 833 aa6.21□□□□□ -1.42
NUP88-208ENST00000574087 Q6ZRM9 215 aa6.21□□□□□ -1.42
NUP88-208ENST00000574087 PRRT2Q7Z6L0 340 aaPredicted RBP6.21□□□□□ -1.42
NUP88-208ENST00000574087 CATIPQ7Z7H3 387 aa6.21□□□□□ -1.42
NUP88-208ENST00000574087 TPH2Q8IWU9 490 aa6.21□□□□□ -1.42
NUP88-208ENST00000574087 GSPT2Q8IYD1 628 aaKnown RBP6.21□□□□□ -1.42
NUP88-208ENST00000574087 MB21D1Q8N884 522 aa6.21□□□□□ -1.42
NUP88-208ENST00000574087 NSUN6Q8TEA1 469 aaKnown RBP6.21□□□□□ -1.42
NUP88-208ENST00000574087 MRGPRX4Q96LA9 322 aa6.21□□□□□ -1.42
NUP88-208ENST00000574087 CDK5RAP1Q96SZ6 601 aaKnown RBP6.21□□□□□ -1.42
NUP88-208ENST00000574087 GTPBP4Q9BZE4 634 aaKnown RBP6.21□□□□□ -1.42
NUP88-208ENST00000574087 TDP1Q9NUW8 608 aa6.21□□□□□ -1.42
NUP88-208ENST00000574087 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.21□□□□□ -1.42
NUP88-208ENST00000574087 TSC22D4Q9Y3Q8 395 aa6.21□□□□□ -1.42
NUP88-208ENST00000574087 ACTL7AQ9Y615 435 aa6.21□□□□□ -1.42
NUP88-208ENST00000574087 TTBK1Q5TCY1 1321 aaPredicted RBP6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms