RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 CFAP54Q96N23 3096 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 A0A1B0GUA9 196 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 PRR33A8MZF0 331 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 H3BQ06 376 aaPredicted RBP8.92□□□□□ -0.98
VPS53-214ENST00000572607 K7ERI5 159 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 ACKR2O00590 384 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 B4GALT5O43286 388 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 STX6O43752 255 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 HIP1RO75146 1068 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 POMCP01189 267 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 KRT18P05783 430 aaKnown RBP8.92□□□□□ -0.98
VPS53-214ENST00000572607 CFHP08603 1231 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 PLA2G4BP0C869 781 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 IL9P15248 144 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 DNAJB1P25685 340 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 PBX3P40426 434 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 MLH1P40692 756 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 NRIP1P48552 1158 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 SMTNP53814 917 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 PEX3P56589 373 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 RESTQ13127 1097 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 CAMK1Q14012 370 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 SMC1AQ14683 1233 aaKnown RBP8.92□□□□□ -0.98
VPS53-214ENST00000572607 FAM187BQ17R55 369 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 DCAF4L1Q3SXM0 396 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 HYIQ5T013 277 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 PTCRAQ6ISU1 281 aaPredicted RBP8.92□□□□□ -0.98
VPS53-214ENST00000572607 RINT1Q6NUQ1 792 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 AGMOQ6ZNB7 445 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 RBM23Q86U06 439 aaKnown RBP8.92□□□□□ -0.98
VPS53-214ENST00000572607 SMG8Q8ND04 991 aaKnown RBP8.92□□□□□ -0.98
VPS53-214ENST00000572607 BSNDQ8WZ55 320 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 PNMA5Q96PV4 448 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 PLIN2Q99541 437 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 MMTAG2Q9BU76 263 aaKnown RBP8.92□□□□□ -0.98
VPS53-214ENST00000572607 FZD8Q9H461 694 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 C17orf75Q9HAS0 396 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 KMT5AQ9NQR1 393 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 CCDC39Q9UFE4 941 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 PARP2Q9UGN5 583 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 RBM19Q9Y4C8 960 aaKnown RBP8.92□□□□□ -0.98
VPS53-214ENST00000572607 LOXHD1Q8IVV2 1947 aa8.92□□□□□ -0.98
VPS53-214ENST00000572607 KMT2EQ8IZD2 1858 aa8.91□□□□□ -0.98
VPS53-214ENST00000572607 ARID2Q68CP9 1835 aa8.91□□□□□ -0.98
VPS53-214ENST00000572607 ZMYM2Q9UBW7 1377 aa8.91□□□□□ -0.98
VPS53-214ENST00000572607 MEIS3P2A8K0S8 358 aa8.91□□□□□ -0.98
VPS53-214ENST00000572607 NT5C1B-RDH14C9J2C7 533 aa8.91□□□□□ -0.98
VPS53-214ENST00000572607 H0YCG3 227 aa8.91□□□□□ -0.98
VPS53-214ENST00000572607 FSCN2O14926 492 aa8.91□□□□□ -0.98
VPS53-214ENST00000572607 ALDH2P05091 517 aa8.91□□□□□ -0.98
VPS53-214ENST00000572607 GALTP07902 379 aa8.91□□□□□ -0.98
VPS53-214ENST00000572607 GUCY2CP25092 1073 aa8.91□□□□□ -0.98
VPS53-214ENST00000572607 OR1G1P47890 313 aa8.91□□□□□ -0.98
VPS53-214ENST00000572607 ERVFC1P60507 584 aa8.91□□□□□ -0.98
VPS53-214ENST00000572607 NHLH1Q02575 133 aa8.91□□□□□ -0.98
VPS53-214ENST00000572607 CEBPZQ03701 1054 aaKnown RBP8.91□□□□□ -0.98
VPS53-214ENST00000572607 STRN3Q13033 797 aa8.91□□□□□ -0.98
VPS53-214ENST00000572607 GIT2Q14161 759 aa8.91□□□□□ -0.98
VPS53-214ENST00000572607 COL19A1Q14993 1142 aa8.91□□□□□ -0.98
VPS53-214ENST00000572607 DUSP6Q16828 381 aa8.91□□□□□ -0.98
VPS53-214ENST00000572607 TMEM119Q4V9L6 283 aa8.91□□□□□ -0.98
VPS53-214ENST00000572607 ATF7IP2Q5U623 682 aa8.91□□□□□ -0.98
VPS53-214ENST00000572607 KCNK18Q7Z418 384 aa8.91□□□□□ -0.98
VPS53-214ENST00000572607 CDR2LQ86X02 465 aaPredicted RBP8.91□□□□□ -0.98
VPS53-214ENST00000572607 GJD3Q8N144 294 aa8.91□□□□□ -0.98
VPS53-214ENST00000572607 EFHBQ8N7U6 833 aa8.91□□□□□ -0.98
VPS53-214ENST00000572607 SYT2Q8N9I0 419 aaPredicted RBP8.91□□□□□ -0.98
VPS53-214ENST00000572607 ZNF396Q96N95 335 aaPredicted RBP8.91□□□□□ -0.98
VPS53-214ENST00000572607 GAD1Q99259 594 aa8.91□□□□□ -0.98
VPS53-214ENST00000572607 KIFC3Q9BVG8 833 aa8.91□□□□□ -0.98
VPS53-214ENST00000572607 RUSC1Q9BVN2 902 aa8.91□□□□□ -0.98
VPS53-214ENST00000572607 NXF3Q9H4D5 531 aaKnown RBP8.91□□□□□ -0.98
VPS53-214ENST00000572607 PDZD7Q9H5P4 517 aa8.91□□□□□ -0.98
VPS53-214ENST00000572607 NRDE2Q9H7Z3 1164 aa8.91□□□□□ -0.98
VPS53-214ENST00000572607 POLD4Q9HCU8 107 aa8.91□□□□□ -0.98
VPS53-214ENST00000572607 MTMR6Q9Y217 621 aa8.91□□□□□ -0.98
VPS53-214ENST00000572607 FAN1Q9Y2M0 1017 aa8.91□□□□□ -0.98
VPS53-214ENST00000572607 HES2Q9Y543 173 aa8.91□□□□□ -0.98
VPS53-214ENST00000572607 KIAA1671Q9BY89 1806 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 ARL5CA6NH57 179 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 TBCAO75347 108 aaKnown RBP8.9□□□□□ -0.98
VPS53-214ENST00000572607 FAM13AO94988 1023 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 S1PR4O95977 384 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 ADH1BP00325 375 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 PLS3P13797 630 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 AKAP5P24588 427 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 MARCKSP29966 332 aaPredicted RBP8.9□□□□□ -0.98
VPS53-214ENST00000572607 NPTX2P47972 431 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 SLC11A1P49279 550 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 MRE11P49959 708 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 SCNN1GP51170 649 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 YARSP54577 528 aaKnown RBP8.9□□□□□ -0.98
VPS53-214ENST00000572607 PRR20EP86478 221 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 PRR20CP86479 221 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 PRR20DP86480 221 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 PRR20BP86481 221 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 PRR20AP86496 221 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 RAD51AP2Q09MP3 1159 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 GRIK3Q13003 919 aa8.9□□□□□ -0.98
VPS53-214ENST00000572607 ADAM15Q13444 863 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms