RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 PLCB4Q15147 1175 aa9.71□□□□□ -0.86
VPS39-207ENST00000563692 EXOC3L4Q17RC7 722 aa9.71□□□□□ -0.86
VPS39-207ENST00000563692 PPP2R2DQ66LE6 453 aa9.71□□□□□ -0.86
VPS39-207ENST00000563692 RRAGAQ7L523 313 aa9.71□□□□□ -0.86
VPS39-207ENST00000563692 FMNL3Q8IVF7 1028 aa9.71□□□□□ -0.86
VPS39-207ENST00000563692 TXLNBQ8N3L3 684 aa9.71□□□□□ -0.86
VPS39-207ENST00000563692 RDH13Q8NBN7 331 aa9.71□□□□□ -0.86
VPS39-207ENST00000563692 PHOSPHO2Q8TCD6 241 aa9.71□□□□□ -0.86
VPS39-207ENST00000563692 SYN2Q92777 582 aaPredicted RBP9.71□□□□□ -0.86
VPS39-207ENST00000563692 TMEM143Q96AN5 459 aa9.71□□□□□ -0.86
VPS39-207ENST00000563692 PPP1R13BQ96KQ4 1090 aa9.71□□□□□ -0.86
VPS39-207ENST00000563692 CCDC42Q96M95 316 aa9.71□□□□□ -0.86
VPS39-207ENST00000563692 LSM14BQ9BX40 385 aaKnown RBP9.71□□□□□ -0.86
VPS39-207ENST00000563692 TTYH3Q9C0H2 523 aa9.71□□□□□ -0.86
VPS39-207ENST00000563692 C2orf40Q9H1Z8 148 aa9.71□□□□□ -0.86
VPS39-207ENST00000563692 PCIF1Q9H4Z3 704 aa9.71□□□□□ -0.86
VPS39-207ENST00000563692 SUGCTQ9HAC7 445 aa9.71□□□□□ -0.86
VPS39-207ENST00000563692 PLCB1Q9NQ66 1216 aa9.71□□□□□ -0.86
VPS39-207ENST00000563692 AGPAT5Q9NUQ2 364 aa9.71□□□□□ -0.86
VPS39-207ENST00000563692 HSPBP1Q9NZL4 362 aa9.71□□□□□ -0.86
VPS39-207ENST00000563692 PLAGL2Q9UPG8 496 aa9.71□□□□□ -0.86
VPS39-207ENST00000563692 PCDHA11Q9Y5I1 949 aa9.71□□□□□ -0.86
VPS39-207ENST00000563692 EPN1Q9Y6I3 576 aaPredicted RBP9.71□□□□□ -0.86
VPS39-207ENST00000563692 KIAA1217Q5T5P2 1943 aa9.7□□□□□ -0.86
VPS39-207ENST00000563692 LRRIQ4A6NIV6 560 aa9.7□□□□□ -0.86
VPS39-207ENST00000563692 SOWAHDA6NJG2 315 aa9.7□□□□□ -0.86
VPS39-207ENST00000563692 RNF225M0QZC1 329 aaPredicted RBP9.7□□□□□ -0.86
VPS39-207ENST00000563692 EFCAB14O75071 495 aa9.7□□□□□ -0.86
VPS39-207ENST00000563692 CAND2O75155 1236 aa9.7□□□□□ -0.86
VPS39-207ENST00000563692 LDHAP00338 332 aaKnown RBP9.7□□□□□ -0.86
VPS39-207ENST00000563692 GLRA2P23416 452 aa9.7□□□□□ -0.86
VPS39-207ENST00000563692 MARK3P27448 753 aa9.7□□□□□ -0.86
VPS39-207ENST00000563692 TMOD1P28289 359 aa9.7□□□□□ -0.86
VPS39-207ENST00000563692 HNRNPH3P31942 346 aaKnown RBP9.7□□□□□ -0.86
VPS39-207ENST00000563692 LIG4P49917 911 aa9.7□□□□□ -0.86
VPS39-207ENST00000563692 VAMP7P51809 220 aa9.7□□□□□ -0.86
VPS39-207ENST00000563692 RABGGTBP53611 331 aa9.7□□□□□ -0.86
VPS39-207ENST00000563692 ENPEPQ07075 957 aa9.7□□□□□ -0.86
VPS39-207ENST00000563692 BFSP1Q12934 665 aa9.7□□□□□ -0.86
VPS39-207ENST00000563692 GRIN2CQ14957 1233 aa9.7□□□□□ -0.86
VPS39-207ENST00000563692 MEA1Q16626 185 aa9.7□□□□□ -0.86
VPS39-207ENST00000563692 SFMBT2Q5VUG0 894 aa9.7□□□□□ -0.86
VPS39-207ENST00000563692 CNKSR3Q6P9H4 555 aa9.7□□□□□ -0.86
VPS39-207ENST00000563692 ZBTB8OSQ8IWT0 167 aa9.7□□□□□ -0.86
VPS39-207ENST00000563692 KIF18AQ8NI77 898 aa9.7□□□□□ -0.86
VPS39-207ENST00000563692 PRPF31Q8WWY3 499 aaKnown RBP9.7□□□□□ -0.86
VPS39-207ENST00000563692 PSPC1Q8WXF1 523 aaKnown RBP9.7□□□□□ -0.86
VPS39-207ENST00000563692 BSNDQ8WZ55 320 aa9.7□□□□□ -0.86
VPS39-207ENST00000563692 POMGNT1Q8WZA1 660 aa9.7□□□□□ -0.86
VPS39-207ENST00000563692 DHX38Q92620 1227 aaKnown RBP9.7□□□□□ -0.86
VPS39-207ENST00000563692 SLC35C1Q96A29 364 aa9.7□□□□□ -0.86
VPS39-207ENST00000563692 PRIMPOLQ96LW4 560 aa9.7□□□□□ -0.86
VPS39-207ENST00000563692 C16orf45Q96MC5 204 aaPredicted RBP9.7□□□□□ -0.86
VPS39-207ENST00000563692 CEP89Q96ST8 783 aa9.7□□□□□ -0.86
VPS39-207ENST00000563692 CRACR2AQ9BSW2 395 aa9.7□□□□□ -0.86
VPS39-207ENST00000563692 NKX2-4Q9H2Z4 354 aa9.7□□□□□ -0.86
VPS39-207ENST00000563692 ARHGAP28Q9P2N2 729 aa9.7□□□□□ -0.86
VPS39-207ENST00000563692 SUCLA2Q9P2R7 463 aaPredicted RBP9.7□□□□□ -0.86
VPS39-207ENST00000563692 FBXL5Q9UKA1 691 aa9.7□□□□□ -0.86
VPS39-207ENST00000563692 MYO6Q9UM54 1294 aa9.7□□□□□ -0.86
VPS39-207ENST00000563692 ADGRG1Q9Y653 693 aa9.7□□□□□ -0.86
VPS39-207ENST00000563692 BZW2Q9Y6E2 419 aaKnown RBP9.7□□□□□ -0.86
VPS39-207ENST00000563692 IGKV6-21A0A0C4DH24 114 aa9.69□□□□□ -0.86
VPS39-207ENST00000563692 ABHD14A-ACY1A0A1B0GW23 586 aa9.69□□□□□ -0.86
VPS39-207ENST00000563692 ZNF233A6NK53 670 aa9.69□□□□□ -0.86
VPS39-207ENST00000563692 HNRNPDLO14979 420 aaKnown RBP9.69□□□□□ -0.86
VPS39-207ENST00000563692 COL1A2P08123 1366 aa9.69□□□□□ -0.86
VPS39-207ENST00000563692 CCDC172P0C7W6 258 aa9.69□□□□□ -0.86
VPS39-207ENST00000563692 FMO5P49326 533 aa9.69□□□□□ -0.86
VPS39-207ENST00000563692 TERF1P54274 439 aa9.69□□□□□ -0.86
VPS39-207ENST00000563692 POLR2FP61218 127 aaKnown RBP9.69□□□□□ -0.86
VPS39-207ENST00000563692 ZNF200P98182 395 aaPredicted RBP9.69□□□□□ -0.86
VPS39-207ENST00000563692 IKBKEQ14164 716 aa9.69□□□□□ -0.86
VPS39-207ENST00000563692 SPA17Q15506 151 aa9.69□□□□□ -0.86
VPS39-207ENST00000563692 ZNF618Q5T7W0 954 aa9.69□□□□□ -0.86
VPS39-207ENST00000563692 PDXDC1Q6P996 788 aa9.69□□□□□ -0.86
VPS39-207ENST00000563692 RAD9BQ6WBX8 426 aa9.69□□□□□ -0.86
VPS39-207ENST00000563692 TOGARAM2Q6ZUX3 1019 aa9.69□□□□□ -0.86
VPS39-207ENST00000563692 NYAP1Q6ZVC0 841 aa9.69□□□□□ -0.86
VPS39-207ENST00000563692 RSPH3Q86UC2 560 aa9.69□□□□□ -0.86
VPS39-207ENST00000563692 SERINC5Q86VE9 423 aa9.69□□□□□ -0.86
VPS39-207ENST00000563692 TRIM50Q86XT4 487 aa9.69□□□□□ -0.86
VPS39-207ENST00000563692 GPD1LQ8N335 351 aa9.69□□□□□ -0.86
VPS39-207ENST00000563692 ASAP3Q8TDY4 903 aa9.69□□□□□ -0.86
VPS39-207ENST00000563692 ZNF592Q92610 1267 aa9.69□□□□□ -0.86
VPS39-207ENST00000563692 NRCAMQ92823 1304 aa9.69□□□□□ -0.86
VPS39-207ENST00000563692 SPAG5Q96R06 1193 aa9.69□□□□□ -0.86
VPS39-207ENST00000563692 CHP1Q99653 195 aa9.69□□□□□ -0.86
VPS39-207ENST00000563692 CBWD1Q9BRT8 395 aa9.69□□□□□ -0.86
VPS39-207ENST00000563692 ZBED2Q9BTP6 218 aa9.69□□□□□ -0.86
VPS39-207ENST00000563692 KIFC3Q9BVG8 833 aa9.69□□□□□ -0.86
VPS39-207ENST00000563692 IKZF4Q9H2S9 585 aa9.69□□□□□ -0.86
VPS39-207ENST00000563692 DEF6Q9H4E7 631 aa9.69□□□□□ -0.86
VPS39-207ENST00000563692 NHEJ1Q9H9Q4 299 aaPredicted RBP9.69□□□□□ -0.86
VPS39-207ENST00000563692 LUC7LQ9NQ29 371 aaKnown RBP9.69□□□□□ -0.86
VPS39-207ENST00000563692 R3HCC1Q9Y3T6 440 aaKnown RBP9.69□□□□□ -0.86
VPS39-207ENST00000563692 RRN3P2A6NIE6 340 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 LRRC53A6NM62 1247 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 USP27XA6NNY8 438 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 EIF3CLB5ME19 914 aaKnown RBP9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms