RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 CERS4Q9HA82 394 aa10.71□□□□□ -0.69
CLK3-208ENST00000562626 TMEM63CQ9P1W3 806 aa10.71□□□□□ -0.69
CLK3-208ENST00000562626 KCNG1Q9UIX4 513 aa10.71□□□□□ -0.69
CLK3-208ENST00000562626 LRFN2Q9ULH4 789 aa10.71□□□□□ -0.69
CLK3-208ENST00000562626 INPP5FQ9Y2H2 1132 aa10.71□□□□□ -0.69
CLK3-208ENST00000562626 PCDHB13Q9Y5F0 798 aa10.71□□□□□ -0.69
CLK3-208ENST00000562626 PRRC2BQ5JSZ5 2229 aaKnown RBP10.7□□□□□ -0.7
CLK3-208ENST00000562626 UBE4BO95155 1302 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 GOLGA8IPA6NC78 632 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 ARL5CA6NH57 179 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 GOLGA8JA6NMD2 632 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 CLIC2O15247 247 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 DDHD2O94830 711 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 EOMESO95936 686 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 POMCP01189 267 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 STAG3L1P0CL83 205 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 CXCL8P10145 99 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 MCF2P10911 925 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 PBX3P40426 434 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 GRM5P41594 1212 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 PRCPP42785 496 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 ACOT2P49753 483 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 SCNN1GP51170 649 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 PMS1P54277 932 aaKnown RBP10.7□□□□□ -0.7
CLK3-208ENST00000562626 SPAG1Q07617 926 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 PSMD2Q13200 908 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 MORC3Q14149 939 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 NAB2Q15742 525 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 SLC10A6Q3KNW5 377 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 DCAF4L1Q3SXM0 396 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 GLRA4Q5JXX5 417 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 SCARA3Q6AZY7 606 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 Q7L0L9 218 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 ZNF280BQ86YH2 543 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 ZMAT2Q96NC0 199 aaKnown RBP10.7□□□□□ -0.7
CLK3-208ENST00000562626 YME1L1Q96TA2 773 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 TCHPQ9BT92 498 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 TRIM6Q9C030 488 aaPredicted RBP10.7□□□□□ -0.7
CLK3-208ENST00000562626 TMEM117Q9H0C3 514 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 NUP62CLQ9H1M0 184 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 SEMA6BQ9H3T3 888 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 PCIF1Q9H4Z3 704 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 RSAD1Q9HA92 442 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 TBC1D13Q9NVG8 400 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 DNAJB4Q9UDY4 337 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 PARP2Q9UGN5 583 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 MTUS1Q9ULD2 1270 aa10.7□□□□□ -0.7
CLK3-208ENST00000562626 TRIM49BA6NDI0 452 aa10.69□□□□□ -0.7
CLK3-208ENST00000562626 PPP1R3GB7ZBB8 358 aa10.69□□□□□ -0.7
CLK3-208ENST00000562626 F8W810 466 aa10.69□□□□□ -0.7
CLK3-208ENST00000562626 RFXAPO00287 272 aa10.69□□□□□ -0.7
CLK3-208ENST00000562626 INPPL1O15357 1258 aa10.69□□□□□ -0.7
CLK3-208ENST00000562626 CLDN3O15551 220 aa10.69□□□□□ -0.7
CLK3-208ENST00000562626 ADRB2P07550 413 aa10.69□□□□□ -0.7
CLK3-208ENST00000562626 MATR3P43243 847 aaKnown RBP eCLIP10.69□□□□□ -0.7
CLK3-208ENST00000562626 SOX4Q06945 474 aaPredicted RBP10.69□□□□□ -0.7
CLK3-208ENST00000562626 NCBP1Q09161 790 aaKnown RBP10.69□□□□□ -0.7
CLK3-208ENST00000562626 ALCAMQ13740 583 aa10.69□□□□□ -0.7
CLK3-208ENST00000562626 BTG3Q14201 252 aaPredicted RBP10.69□□□□□ -0.7
CLK3-208ENST00000562626 ENOX2Q16206 610 aaKnown RBP10.69□□□□□ -0.7
CLK3-208ENST00000562626 KNOP1Q1ED39 458 aaKnown RBP10.69□□□□□ -0.7
CLK3-208ENST00000562626 ZCWPW2Q504Y3 356 aa10.69□□□□□ -0.7
CLK3-208ENST00000562626 ZNF658Q5TYW1 1059 aaPredicted RBP10.69□□□□□ -0.7
CLK3-208ENST00000562626 ALKAL1Q6UXT8 129 aa10.69□□□□□ -0.7
CLK3-208ENST00000562626 TMEM173Q86WV6 379 aaPredicted RBP10.69□□□□□ -0.7
CLK3-208ENST00000562626 CMTR2Q8IYT2 770 aaKnown RBP10.69□□□□□ -0.7
CLK3-208ENST00000562626 SYCP3Q8IZU3 236 aa10.69□□□□□ -0.7
CLK3-208ENST00000562626 BCL7CQ8WUZ0 217 aaPredicted RBP10.69□□□□□ -0.7
CLK3-208ENST00000562626 RABGGTAQ92696 567 aa10.69□□□□□ -0.7
CLK3-208ENST00000562626 TIFAQ96CG3 184 aa10.69□□□□□ -0.7
CLK3-208ENST00000562626 SNX27Q96L92 541 aa10.69□□□□□ -0.7
CLK3-208ENST00000562626 GSDMAQ96QA5 445 aa10.69□□□□□ -0.7
CLK3-208ENST00000562626 MED15Q96RN5 788 aa10.69□□□□□ -0.7
CLK3-208ENST00000562626 PAAF1Q9BRP4 392 aa10.69□□□□□ -0.7
CLK3-208ENST00000562626 ADPGKQ9BRR6 497 aa10.69□□□□□ -0.7
CLK3-208ENST00000562626 MSTO1Q9BUK6 570 aa10.69□□□□□ -0.7
CLK3-208ENST00000562626 GBP3Q9H0R5 595 aa10.69□□□□□ -0.7
CLK3-208ENST00000562626 NRDE2Q9H7Z3 1164 aa10.69□□□□□ -0.7
CLK3-208ENST00000562626 AGPAT3Q9NRZ7 376 aa10.69□□□□□ -0.7
CLK3-208ENST00000562626 TYW1Q9NV66 732 aaKnown RBP10.69□□□□□ -0.7
CLK3-208ENST00000562626 KIAA1468Q9P260 1216 aa10.69□□□□□ -0.7
CLK3-208ENST00000562626 RAPGEFL1Q9UHV5 662 aa10.69□□□□□ -0.7
CLK3-208ENST00000562626 CPSF3Q9UKF6 684 aaKnown RBP10.69□□□□□ -0.7
CLK3-208ENST00000562626 AGO2Q9UKV8 859 aaKnown RBP10.69□□□□□ -0.7
CLK3-208ENST00000562626 STXBP5LQ9Y2K9 1186 aa10.69□□□□□ -0.7
CLK3-208ENST00000562626 INSL6Q9Y581 213 aa10.69□□□□□ -0.7
CLK3-208ENST00000562626 UNC80Q8N2C7 3258 aa10.68□□□□□ -0.7
CLK3-208ENST00000562626 PTPRJQ12913 1337 aa10.68□□□□□ -0.7
CLK3-208ENST00000562626 GOLGA6L22H0YM25 854 aa10.68□□□□□ -0.7
CLK3-208ENST00000562626 OGTO15294 1046 aa10.68□□□□□ -0.7
CLK3-208ENST00000562626 SMC2O95347 1197 aa10.68□□□□□ -0.7
CLK3-208ENST00000562626 SKIP12755 728 aa10.68□□□□□ -0.7
CLK3-208ENST00000562626 SCP2P22307 547 aa10.68□□□□□ -0.7
CLK3-208ENST00000562626 HOXD11P31277 338 aaPredicted RBP10.68□□□□□ -0.7
CLK3-208ENST00000562626 RAB30Q15771 203 aa10.68□□□□□ -0.7
CLK3-208ENST00000562626 XKR4Q5GH76 650 aa10.68□□□□□ -0.7
CLK3-208ENST00000562626 NOMO2Q5JPE7 1267 aa10.68□□□□□ -0.7
CLK3-208ENST00000562626 PPP2R2DQ66LE6 453 aa10.68□□□□□ -0.7
CLK3-208ENST00000562626 RBM43Q6ZSC3 357 aaKnown RBP10.68□□□□□ -0.7
CLK3-208ENST00000562626 CBWD2Q8IUF1 395 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 145.2 ms