RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 N4BP1O75113 896 aaKnown RBP12.88□□□□□ -0.35
USP3-220ENST00000561381 RFPL2O75678 378 aa12.88□□□□□ -0.35
USP3-220ENST00000561381 ADH1AP07327 375 aa12.88□□□□□ -0.35
USP3-220ENST00000561381 RPL17P18621 184 aaKnown RBP12.88□□□□□ -0.35
USP3-220ENST00000561381 SAFBQ15424 915 aaKnown RBP eCLIP12.88□□□□□ -0.35
USP3-220ENST00000561381 CDCA2Q69YH5 1023 aaPredicted RBP12.88□□□□□ -0.35
USP3-220ENST00000561381 FUT10Q6P4F1 479 aa12.88□□□□□ -0.35
USP3-220ENST00000561381 OTOP3Q7RTS5 596 aa12.88□□□□□ -0.35
USP3-220ENST00000561381 PALB2Q86YC2 1186 aa12.88□□□□□ -0.35
USP3-220ENST00000561381 GLYCTKQ8IVS8 523 aa12.88□□□□□ -0.35
USP3-220ENST00000561381 HACE1Q8IYU2 909 aa12.88□□□□□ -0.35
USP3-220ENST00000561381 TMEM105Q8N8V8 129 aa12.88□□□□□ -0.35
USP3-220ENST00000561381 C8orf76Q96K31 380 aa12.88□□□□□ -0.35
USP3-220ENST00000561381 POLR3CQ9BUI4 534 aaPredicted RBP12.88□□□□□ -0.35
USP3-220ENST00000561381 COLEC11Q9BWP8 271 aa12.88□□□□□ -0.35
USP3-220ENST00000561381 FZD8Q9H461 694 aa12.88□□□□□ -0.35
USP3-220ENST00000561381 RXFP1Q9HBX9 757 aa12.88□□□□□ -0.35
USP3-220ENST00000561381 POLD4Q9HCU8 107 aa12.88□□□□□ -0.35
USP3-220ENST00000561381 CHST7Q9NS84 486 aa12.88□□□□□ -0.35
USP3-220ENST00000561381 LIMCH1Q9UPQ0 1083 aa12.88□□□□□ -0.35
USP3-220ENST00000561381 H0Y858 1186 aa12.87□□□□□ -0.35
USP3-220ENST00000561381 NR1I2O75469 434 aa12.87□□□□□ -0.35
USP3-220ENST00000561381 GLUD1P00367 558 aa12.87□□□□□ -0.35
USP3-220ENST00000561381 EDN1P05305 212 aa12.87□□□□□ -0.35
USP3-220ENST00000561381 OR52Z1P0C646 297 aa12.87□□□□□ -0.35
USP3-220ENST00000561381 LIG1P18858 919 aa12.87□□□□□ -0.35
USP3-220ENST00000561381 GRIK3Q13003 919 aa12.87□□□□□ -0.35
USP3-220ENST00000561381 NBR1Q14596 966 aa12.87□□□□□ -0.35
USP3-220ENST00000561381 ECM1Q16610 540 aa12.87□□□□□ -0.35
USP3-220ENST00000561381 PADI6Q6TGC4 694 aa12.87□□□□□ -0.35
USP3-220ENST00000561381 C15orf39Q6ZRI6 1047 aa12.87□□□□□ -0.35
USP3-220ENST00000561381 MCPH1Q8NEM0 835 aa12.87□□□□□ -0.35
USP3-220ENST00000561381 CMASQ8NFW8 434 aaPredicted RBP12.87□□□□□ -0.35
USP3-220ENST00000561381 HASPINQ8TF76 798 aa12.87□□□□□ -0.35
USP3-220ENST00000561381 RIN2Q8WYP3 895 aaPredicted RBP12.87□□□□□ -0.35
USP3-220ENST00000561381 ACSF2Q96CM8 615 aaPredicted RBP12.87□□□□□ -0.35
USP3-220ENST00000561381 NACC1Q96RE7 527 aa12.87□□□□□ -0.35
USP3-220ENST00000561381 KIFC3Q9BVG8 833 aa12.87□□□□□ -0.35
USP3-220ENST00000561381 PDZD7Q9H5P4 517 aa12.87□□□□□ -0.35
USP3-220ENST00000561381 KCNK12Q9HB15 430 aa12.87□□□□□ -0.35
USP3-220ENST00000561381 PRMT7Q9NVM4 692 aaPredicted RBP12.87□□□□□ -0.35
USP3-220ENST00000561381 ADAM28Q9UKQ2 775 aa12.87□□□□□ -0.35
USP3-220ENST00000561381 SSX2IPQ9Y2D8 614 aa12.87□□□□□ -0.35
USP3-220ENST00000561381 ARHGEF35A5YM69 484 aa12.86□□□□□ -0.35
USP3-220ENST00000561381 CASTOR2A6NHX0 329 aa12.86□□□□□ -0.35
USP3-220ENST00000561381 PTGESO14684 152 aa12.86□□□□□ -0.35
USP3-220ENST00000561381 TGM5O43548 720 aa12.86□□□□□ -0.35
USP3-220ENST00000561381 CYP11B2P19099 503 aa12.86□□□□□ -0.35
USP3-220ENST00000561381 RPA1P27694 616 aa12.86□□□□□ -0.35
USP3-220ENST00000561381 FAM187BQ17R55 369 aa12.86□□□□□ -0.35
USP3-220ENST00000561381 TTC38Q5R3I4 469 aa12.86□□□□□ -0.35
USP3-220ENST00000561381 EEF1DP3Q658K8 133 aa12.86□□□□□ -0.35
USP3-220ENST00000561381 PRSS55Q6UWB4 352 aaPredicted RBP12.86□□□□□ -0.35
USP3-220ENST00000561381 NOSTRINQ8IVI9 506 aa12.86□□□□□ -0.35
USP3-220ENST00000561381 ZBTB8OSQ8IWT0 167 aa12.86□□□□□ -0.35
USP3-220ENST00000561381 RSAD2Q8WXG1 361 aa12.86□□□□□ -0.35
USP3-220ENST00000561381 SMG7Q92540 1137 aaKnown RBP12.86□□□□□ -0.35
USP3-220ENST00000561381 ATOH1Q92858 354 aaPredicted RBP12.86□□□□□ -0.35
USP3-220ENST00000561381 ZNF707Q96C28 371 aaPredicted RBP12.86□□□□□ -0.35
USP3-220ENST00000561381 PRIMPOLQ96LW4 560 aa12.86□□□□□ -0.35
USP3-220ENST00000561381 FOXP1Q9H334 677 aaPredicted RBP12.86□□□□□ -0.35
USP3-220ENST00000561381 WDR6Q9NNW5 1121 aaKnown RBP12.86□□□□□ -0.35
USP3-220ENST00000561381 SNTG2Q9NY99 539 aa12.86□□□□□ -0.35
USP3-220ENST00000561381 DOCK6Q96HP0 2047 aa12.85□□□□□ -0.35
USP3-220ENST00000561381 NARSO43776 548 aaKnown RBP12.85□□□□□ -0.35
USP3-220ENST00000561381 TADA2AO75478 443 aa12.85□□□□□ -0.35
USP3-220ENST00000561381 RECQL4O94761 1208 aa12.85□□□□□ -0.35
USP3-220ENST00000561381 KIF4AO95239 1232 aa12.85□□□□□ -0.35
USP3-220ENST00000561381 PRKCBP05771 671 aa12.85□□□□□ -0.35
USP3-220ENST00000561381 GBP2P32456 591 aaPredicted RBP12.85□□□□□ -0.35
USP3-220ENST00000561381 TUSC3Q13454 348 aa12.85□□□□□ -0.35
USP3-220ENST00000561381 PRPF4BQ13523 1007 aaKnown RBP12.85□□□□□ -0.35
USP3-220ENST00000561381 TDGQ13569 410 aa12.85□□□□□ -0.35
USP3-220ENST00000561381 HSP90AA2PQ14568 343 aaPredicted RBP12.85□□□□□ -0.35
USP3-220ENST00000561381 TMEM132AQ24JP5 1023 aa12.85□□□□□ -0.35
USP3-220ENST00000561381 USP41Q3LFD5 358 aa12.85□□□□□ -0.35
USP3-220ENST00000561381 RTP2Q5QGT7 225 aa12.85□□□□□ -0.35
USP3-220ENST00000561381 CWF19L1Q69YN2 538 aaKnown RBP12.85□□□□□ -0.35
USP3-220ENST00000561381 LILRA6Q6PI73 481 aa12.85□□□□□ -0.35
USP3-220ENST00000561381 C4orf32Q8N8J7 132 aa12.85□□□□□ -0.35
USP3-220ENST00000561381 FBXO18Q8NFZ0 1043 aa12.85□□□□□ -0.35
USP3-220ENST00000561381 ERMNQ8TAM6 284 aa12.85□□□□□ -0.35
USP3-220ENST00000561381 DEPTORQ8TB45 409 aa12.85□□□□□ -0.35
USP3-220ENST00000561381 MYADMQ96S97 322 aa12.85□□□□□ -0.35
USP3-220ENST00000561381 LLPHQ9BRT6 129 aaKnown RBP12.85□□□□□ -0.35
USP3-220ENST00000561381 CCDC113Q9H0I3 377 aa12.85□□□□□ -0.35
USP3-220ENST00000561381 NT5C3AQ9H0P0 336 aa12.85□□□□□ -0.35
USP3-220ENST00000561381 MFSD1Q9H3U5 465 aa12.85□□□□□ -0.35
USP3-220ENST00000561381 DOCK8Q8NF50 2099 aa12.85□□□□□ -0.35
USP3-220ENST00000561381 CLUHO75153 1309 aa12.85□□□□□ -0.35
USP3-220ENST00000561381 ZMYM2Q9UBW7 1377 aa12.84□□□□□ -0.35
USP3-220ENST00000561381 MTCL1Q9Y4B5 1905 aaKnown RBP12.84□□□□□ -0.35
USP3-220ENST00000561381 ACKR2O00590 384 aa12.84□□□□□ -0.35
USP3-220ENST00000561381 N4BP3O15049 544 aa12.84□□□□□ -0.35
USP3-220ENST00000561381 PI15O43692 258 aa12.84□□□□□ -0.35
USP3-220ENST00000561381 NPR3P17342 541 aa12.84□□□□□ -0.35
USP3-220ENST00000561381 IGFBP6P24592 240 aaPredicted RBP12.84□□□□□ -0.35
USP3-220ENST00000561381 CCT6AP40227 531 aaKnown RBP12.84□□□□□ -0.35
USP3-220ENST00000561381 NAMPTP43490 491 aa12.84□□□□□ -0.35
USP3-220ENST00000561381 NAB2Q15742 525 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms