RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 PTPRZ1P23471 2315 aaPredicted RBP5.86□□□□□ -1.47
VPS13C-209ENST00000560637 ANKRD36CQ5JPF3 1778 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 TBKBP1A7MCY6 615 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 DAPK3O43293 454 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 HLA-DRAP01903 254 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 CCL5P13501 91 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 MAP2K2P36507 400 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 MLH1P40692 756 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 SCNN1GP51170 649 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 GRB14Q14449 540 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 TMEM119Q4V9L6 283 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 ZBTB41Q5SVQ8 909 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 METTL23Q86XA0 190 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 FBXL13Q8NEE6 735 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 IPO4Q8TEX9 1081 aaKnown RBP5.86□□□□□ -1.47
VPS13C-209ENST00000560637 INTS2Q9H0H0 1204 aaKnown RBP5.86□□□□□ -1.47
VPS13C-209ENST00000560637 HIPK3Q9H422 1215 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 ZKSCAN5Q9Y2L8 839 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 FHOD1Q9Y613 1164 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 AKAP11Q9UKA4 1901 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 CYP3A7-CYP3A51PA0A087WV96 503 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 LGALS16A8MUM7 142 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 DUSP11O75319 330 aaKnown RBP5.86□□□□□ -1.47
VPS13C-209ENST00000560637 TOM1L1O75674 476 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 CYP3A7P24462 503 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 NAMPTP43490 491 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 PPM1FP49593 454 aaPredicted RBP5.86□□□□□ -1.47
VPS13C-209ENST00000560637 PSMC1P62191 440 aaKnown RBP5.86□□□□□ -1.47
VPS13C-209ENST00000560637 DLG4P78352 724 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 GFPT1Q06210 699 aaPredicted RBP5.86□□□□□ -1.47
VPS13C-209ENST00000560637 ARHGAP1Q07960 439 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 MTHFD1LQ6UB35 978 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.86□□□□□ -1.47
VPS13C-209ENST00000560637 DAAM2Q86T65 1068 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 TXLNBQ8N3L3 684 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 RDM1Q8NG50 284 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 URGCPQ8TCY9 931 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 TRAF3IP1Q8TDR0 691 aaPredicted RBP5.86□□□□□ -1.47
VPS13C-209ENST00000560637 GOLGA1Q92805 767 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 DNAJC19Q96DA6 116 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 CHP1Q99653 195 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 APOL5Q9BWW9 433 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 NXF3Q9H4D5 531 aaKnown RBP5.86□□□□□ -1.47
VPS13C-209ENST00000560637 LRRC4Q9HBW1 653 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 NGRNQ9NPE2 291 aaKnown RBP5.86□□□□□ -1.47
VPS13C-209ENST00000560637 ST3GAL5Q9UNP4 418 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 PCDHB7Q9Y5E2 793 aa5.86□□□□□ -1.47
VPS13C-209ENST00000560637 CEP350Q5VT06 3117 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 NKRFO15226 690 aaKnown RBP eCLIP5.85□□□□□ -1.47
VPS13C-209ENST00000560637 ATMINO43313 823 aaPredicted RBP5.85□□□□□ -1.47
VPS13C-209ENST00000560637 N4BP1O75113 896 aaKnown RBP5.85□□□□□ -1.47
VPS13C-209ENST00000560637 RECQL4O94761 1208 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 FTCDO95954 541 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 FXR1P51114 621 aaKnown RBP eCLIP5.85□□□□□ -1.47
VPS13C-209ENST00000560637 ACLYP53396 1101 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 PPP2R5DQ14738 602 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 ZNF792Q3KQV3 632 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 CLEC17AQ6ZS10 378 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 TMCO2Q7Z6W1 182 aaPredicted RBP5.85□□□□□ -1.47
VPS13C-209ENST00000560637 SLC17A8Q8NDX2 589 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 PPTC7Q8NI37 304 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 UBA3Q8TBC4 463 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 TSC1Q92574 1164 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 UBXN4Q92575 508 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 FAM161BQ96MY7 647 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 NUP58Q9BVL2 599 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 EPN1Q9Y6I3 576 aaPredicted RBP5.85□□□□□ -1.47
VPS13C-209ENST00000560637 PASKQ96RG2 1323 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 POLR2AP24928 1970 aaKnown RBP5.85□□□□□ -1.47
VPS13C-209ENST00000560637 MAP1BP46821 2468 aaKnown RBP5.85□□□□□ -1.47
VPS13C-209ENST00000560637 M0QYV0 167 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 OGTO15294 1046 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 DHX15O43143 795 aaKnown RBP5.85□□□□□ -1.47
VPS13C-209ENST00000560637 CEP104O60308 925 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 EVI5O60447 810 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 MOCS2O96007 188 aaPredicted RBP5.85□□□□□ -1.47
VPS13C-209ENST00000560637 RHOXF2BP0C7M4 288 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 FMO5P49326 533 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 MYL6P60660 151 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 DYNLT1P63172 113 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 NOP14P78316 857 aaKnown RBP5.85□□□□□ -1.47
VPS13C-209ENST00000560637 MAP3K10Q02779 954 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 EHHADHQ08426 723 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 BFSP2Q13515 415 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 IRF5Q13568 498 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 ALCAMQ13740 583 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 BSPRYQ5W0U4 402 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 NIPA1Q7RTP0 329 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 GSTA5Q7RTV2 222 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 LRRC8AQ8IWT6 810 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 SLAIN1Q8ND83 568 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 KAT5Q92993 513 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 CCDC114Q96M63 670 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 SEPT5Q99719 369 aaPredicted RBP5.85□□□□□ -1.47
VPS13C-209ENST00000560637 RHOXF2Q9BQY4 288 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 TRAIPQ9BWF2 469 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 GOLPH3Q9H4A6 298 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 XPNPEP1Q9NQW7 623 aa5.85□□□□□ -1.47
VPS13C-209ENST00000560637 ABI2Q9NYB9 513 aaPredicted RBP5.85□□□□□ -1.47
VPS13C-209ENST00000560637 PGAP2Q9UHJ9 254 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms