RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 CMTR2Q8IYT2 770 aaKnown RBP23.78■■□□□ 1.4
SNX1-210ENST00000560260 GSTCDQ8NEC7 633 aa23.78■■□□□ 1.4
SNX1-210ENST00000560260 POMGNT1Q8WZA1 660 aa23.78■■□□□ 1.4
SNX1-210ENST00000560260 PCIF1Q9H4Z3 704 aa23.78■■□□□ 1.4
SNX1-210ENST00000560260 RNF216Q9NWF9 866 aaPredicted RBP23.78■■□□□ 1.4
SNX1-210ENST00000560260 MIOSQ9NXC5 875 aa23.78■■□□□ 1.4
SNX1-210ENST00000560260 PARP2Q9UGN5 583 aa23.78■■□□□ 1.4
SNX1-210ENST00000560260 AGO2Q9UKV8 859 aaKnown RBP23.78■■□□□ 1.4
SNX1-210ENST00000560260 GIT1Q9Y2X7 761 aa23.78■■□□□ 1.4
SNX1-210ENST00000560260 CHD7Q9P2D1 2997 aa23.77■■□□□ 1.4
SNX1-210ENST00000560260 CLIC2O15247 247 aa23.77■■□□□ 1.4
SNX1-210ENST00000560260 INPPL1O15357 1258 aa23.77■■□□□ 1.4
SNX1-210ENST00000560260 B4GALT3O60512 393 aa23.77■■□□□ 1.4
SNX1-210ENST00000560260 GARTP22102 1010 aa23.77■■□□□ 1.4
SNX1-210ENST00000560260 RAB30Q15771 203 aa23.77■■□□□ 1.4
SNX1-210ENST00000560260 HABP4Q5JVS0 413 aaKnown RBP23.77■■□□□ 1.4
SNX1-210ENST00000560260 SLFN12LQ6IEE8 588 aa23.77■■□□□ 1.4
SNX1-210ENST00000560260 ARMCX5Q6P1M9 558 aa23.77■■□□□ 1.4
SNX1-210ENST00000560260 GLB1LQ6UWU2 654 aa23.77■■□□□ 1.4
SNX1-210ENST00000560260 CRELD2Q6UXH1 353 aaPredicted RBP23.77■■□□□ 1.4
SNX1-210ENST00000560260 LRRC55Q6ZSA7 311 aa23.77■■□□□ 1.4
SNX1-210ENST00000560260 HACE1Q8IYU2 909 aa23.77■■□□□ 1.4
SNX1-210ENST00000560260 ADSSL1Q8N142 457 aa23.77■■□□□ 1.4
SNX1-210ENST00000560260 SAAL1Q96ER3 474 aa23.77■■□□□ 1.4
SNX1-210ENST00000560260 LRCH3Q96II8 777 aa23.77■■□□□ 1.4
SNX1-210ENST00000560260 CCDC94Q9BW85 323 aaPredicted RBP23.77■■□□□ 1.4
SNX1-210ENST00000560260 TYW1Q9NV66 732 aaKnown RBP23.77■■□□□ 1.4
SNX1-210ENST00000560260 PLAGL2Q9UPG8 496 aa23.77■■□□□ 1.4
SNX1-210ENST00000560260 MRPL42Q9Y6G3 142 aaKnown RBP23.77■■□□□ 1.4
SNX1-210ENST00000560260 LINC01553A4QN01 128 aa23.76■■□□□ 1.39
SNX1-210ENST00000560260 ARL5CA6NH57 179 aa23.76■■□□□ 1.39
SNX1-210ENST00000560260 PTGESO14684 152 aa23.76■■□□□ 1.39
SNX1-210ENST00000560260 CXCL8P10145 99 aa23.76■■□□□ 1.39
SNX1-210ENST00000560260 SCNN1GP51170 649 aa23.76■■□□□ 1.39
SNX1-210ENST00000560260 BTG3Q14201 252 aaPredicted RBP23.76■■□□□ 1.39
SNX1-210ENST00000560260 ZCWPW2Q504Y3 356 aa23.76■■□□□ 1.39
SNX1-210ENST00000560260 NOMO2Q5JPE7 1267 aa23.76■■□□□ 1.39
SNX1-210ENST00000560260 CCDC183Q5T5S1 534 aa23.76■■□□□ 1.39
SNX1-210ENST00000560260 SNX27Q96L92 541 aa23.76■■□□□ 1.39
SNX1-210ENST00000560260 SEMA6BQ9H3T3 888 aa23.76■■□□□ 1.39
SNX1-210ENST00000560260 CPSF3Q9UKF6 684 aaKnown RBP23.76■■□□□ 1.39
SNX1-210ENST00000560260 CITO14578 2027 aa23.75■■□□□ 1.39
SNX1-210ENST00000560260 TRIP11Q15643 1979 aa23.75■■□□□ 1.39
SNX1-210ENST00000560260 GOLGA8IPA6NC78 632 aa23.75■■□□□ 1.39
SNX1-210ENST00000560260 GOLGA8JA6NMD2 632 aa23.75■■□□□ 1.39
SNX1-210ENST00000560260 PPP1R3GB7ZBB8 358 aa23.75■■□□□ 1.39
SNX1-210ENST00000560260 ACOT2P49753 483 aa23.75■■□□□ 1.39
SNX1-210ENST00000560260 ENOX2Q16206 610 aaKnown RBP23.75■■□□□ 1.39
SNX1-210ENST00000560260 SLC10A6Q3KNW5 377 aa23.75■■□□□ 1.39
SNX1-210ENST00000560260 C12orf56Q8IXR9 622 aa23.75■■□□□ 1.39
SNX1-210ENST00000560260 ABI1Q8IZP0 508 aa23.75■■□□□ 1.39
SNX1-210ENST00000560260 TRIML1Q8N9V2 468 aa23.75■■□□□ 1.39
SNX1-210ENST00000560260 CWH43Q9H720 699 aa23.75■■□□□ 1.39
SNX1-210ENST00000560260 UBN1Q9NPG3 1134 aa23.75■■□□□ 1.39
SNX1-210ENST00000560260 TBC1D13Q9NVG8 400 aa23.75■■□□□ 1.39
SNX1-210ENST00000560260 HSPBP1Q9NZL4 362 aa23.75■■□□□ 1.39
SNX1-210ENST00000560260 MSRAQ9UJ68 235 aa23.75■■□□□ 1.39
SNX1-210ENST00000560260 ANK1P16157 1881 aa23.75■■□□□ 1.39
SNX1-210ENST00000560260 PDCD11Q14690 1871 aaKnown RBP23.74■■□□□ 1.39
SNX1-210ENST00000560260 POMCP01189 267 aa23.74■■□□□ 1.39
SNX1-210ENST00000560260 PMS1P54277 932 aaKnown RBP23.74■■□□□ 1.39
SNX1-210ENST00000560260 WNT7BP56706 349 aa23.74■■□□□ 1.39
SNX1-210ENST00000560260 TAP1Q03518 808 aa23.74■■□□□ 1.39
SNX1-210ENST00000560260 NFKBIBQ15653 356 aa23.74■■□□□ 1.39
SNX1-210ENST00000560260 KLHL40Q2TBA0 621 aa23.74■■□□□ 1.39
SNX1-210ENST00000560260 HS2ST1Q7LGA3 356 aa23.74■■□□□ 1.39
SNX1-210ENST00000560260 LRRC43Q8N309 656 aa23.74■■□□□ 1.39
SNX1-210ENST00000560260 ACAP3Q96P50 834 aa23.74■■□□□ 1.39
SNX1-210ENST00000560260 NLRC5Q86WI3 1866 aa23.73■■□□□ 1.39
SNX1-210ENST00000560260 PDXKO00764 312 aa23.73■■□□□ 1.39
SNX1-210ENST00000560260 CLTAP09496 248 aa23.73■■□□□ 1.39
SNX1-210ENST00000560260 CYP2J2P51589 502 aa23.73■■□□□ 1.39
SNX1-210ENST00000560260 SNRPFP62306 86 aaKnown RBP23.73■■□□□ 1.39
SNX1-210ENST00000560260 XKR4Q5GH76 650 aa23.73■■□□□ 1.39
SNX1-210ENST00000560260 GLRA4Q5JXX5 417 aa23.73■■□□□ 1.39
SNX1-210ENST00000560260 CAVIN1Q6NZI2 390 aaKnown RBP23.73■■□□□ 1.39
SNX1-210ENST00000560260 ALKAL1Q6UXT8 129 aa23.73■■□□□ 1.39
SNX1-210ENST00000560260 FIBCD1Q8N539 461 aa23.73■■□□□ 1.39
SNX1-210ENST00000560260 TIFAQ96CG3 184 aa23.73■■□□□ 1.39
SNX1-210ENST00000560260 ZMAT2Q96NC0 199 aaKnown RBP23.73■■□□□ 1.39
SNX1-210ENST00000560260 FAM213AQ9BRX8 229 aa23.73■■□□□ 1.39
SNX1-210ENST00000560260 DMAC2Q9NW81 257 aa23.73■■□□□ 1.39
SNX1-210ENST00000560260 TRAF3IP3Q9Y228 551 aa23.73■■□□□ 1.39
SNX1-210ENST00000560260 TDRD15B5MCY1 1934 aaKnown RBP23.73■■□□□ 1.39
SNX1-210ENST00000560260 TTC26A0AVF1 554 aa23.72■■□□□ 1.39
SNX1-210ENST00000560260 TRIM49BA6NDI0 452 aa23.72■■□□□ 1.39
SNX1-210ENST00000560260 EXTL3O43909 919 aa23.72■■□□□ 1.39
SNX1-210ENST00000560260 KIF20AO95235 890 aa23.72■■□□□ 1.39
SNX1-210ENST00000560260 PTMSP20962 102 aa23.72■■□□□ 1.39
SNX1-210ENST00000560260 NAB2Q15742 525 aa23.72■■□□□ 1.39
SNX1-210ENST00000560260 CENPPQ6IPU0 288 aa23.72■■□□□ 1.39
SNX1-210ENST00000560260 ZNF280BQ86YH2 543 aa23.72■■□□□ 1.39
SNX1-210ENST00000560260 CBWD2Q8IUF1 395 aa23.72■■□□□ 1.39
SNX1-210ENST00000560260 GTPBP4Q9BZE4 634 aaKnown RBP23.72■■□□□ 1.39
SNX1-210ENST00000560260 CGNQ9P2M7 1197 aaKnown RBP23.72■■□□□ 1.39
SNX1-210ENST00000560260 DDHD2O94830 711 aa23.71■■□□□ 1.39
SNX1-210ENST00000560260 NR3C1P04150 777 aa23.71■■□□□ 1.39
SNX1-210ENST00000560260 ADRB2P07550 413 aa23.71■■□□□ 1.39
SNX1-210ENST00000560260 YARSP54577 528 aaKnown RBP23.71■■□□□ 1.39
SNX1-210ENST00000560260 DPCR1Q3MIW9 517 aa23.71■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms