RNA–Protein interactions for RNA: ENST00000560070.5

USP3-217, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-217ENST00000560070 PCDHB13Q9Y5F0 798 aa9.37□□□□□ -0.91
USP3-217ENST00000560070 TRIP12Q14669 1992 aaPredicted RBP9.36□□□□□ -0.91
USP3-217ENST00000560070 A0A1W2PQ27 194 aa9.36□□□□□ -0.91
USP3-217ENST00000560070 A0A1W2PQ64 194 aa9.36□□□□□ -0.91
USP3-217ENST00000560070 A0A1W2PQD8 194 aa9.36□□□□□ -0.91
USP3-217ENST00000560070 CASTOR2A6NHX0 329 aa9.36□□□□□ -0.91
USP3-217ENST00000560070 C5orf67F2Z3F1 127 aa9.36□□□□□ -0.91
USP3-217ENST00000560070 F8W810 466 aa9.36□□□□□ -0.91
USP3-217ENST00000560070 PER2O15055 1255 aa9.36□□□□□ -0.91
USP3-217ENST00000560070 TOM1L1O75674 476 aa9.36□□□□□ -0.91
USP3-217ENST00000560070 ZNF202O95125 648 aa9.36□□□□□ -0.91
USP3-217ENST00000560070 SLC34A2O95436 690 aa9.36□□□□□ -0.91
USP3-217ENST00000560070 CXCL14O95715 111 aa9.36□□□□□ -0.91
USP3-217ENST00000560070 PRR29P0C7W0 189 aa9.36□□□□□ -0.91
USP3-217ENST00000560070 MCF2P10911 925 aa9.36□□□□□ -0.91
USP3-217ENST00000560070 YARSP54577 528 aaKnown RBP9.36□□□□□ -0.91
USP3-217ENST00000560070 GTF2BQ00403 316 aa9.36□□□□□ -0.91
USP3-217ENST00000560070 TCEAL5Q5H9L2 206 aa9.36□□□□□ -0.91
USP3-217ENST00000560070 ZBTB41Q5SVQ8 909 aa9.36□□□□□ -0.91
USP3-217ENST00000560070 PLPP4Q5VZY2 271 aa9.36□□□□□ -0.91
USP3-217ENST00000560070 TMC7Q7Z402 723 aa9.36□□□□□ -0.91
USP3-217ENST00000560070 NELFCDQ8IXH7 590 aa9.36□□□□□ -0.91
USP3-217ENST00000560070 TMEM130Q8N3G9 435 aa9.36□□□□□ -0.91
USP3-217ENST00000560070 BCL7CQ8WUZ0 217 aaPredicted RBP9.36□□□□□ -0.91
USP3-217ENST00000560070 AUTS2Q8WXX7 1259 aa9.36□□□□□ -0.91
USP3-217ENST00000560070 MRPL38Q96DV4 380 aaKnown RBP9.36□□□□□ -0.91
USP3-217ENST00000560070 ACAP3Q96P50 834 aa9.36□□□□□ -0.91
USP3-217ENST00000560070 PYM1Q9BRP8 204 aaKnown RBP9.36□□□□□ -0.91
USP3-217ENST00000560070 PLVAPQ9BX97 442 aa9.36□□□□□ -0.91
USP3-217ENST00000560070 SLC39A2Q9NP94 309 aa9.36□□□□□ -0.91
USP3-217ENST00000560070 SEL1LQ9UBV2 794 aa9.36□□□□□ -0.91
USP3-217ENST00000560070 HPSEQ9Y251 543 aa9.36□□□□□ -0.91
USP3-217ENST00000560070 GOLGA8IPA6NC78 632 aa9.35□□□□□ -0.91
USP3-217ENST00000560070 GOLGA8JA6NMD2 632 aa9.35□□□□□ -0.91
USP3-217ENST00000560070 ABLIM1O14639 778 aa9.35□□□□□ -0.91
USP3-217ENST00000560070 PTGESO14684 152 aa9.35□□□□□ -0.91
USP3-217ENST00000560070 HNRNPDLO14979 420 aaKnown RBP9.35□□□□□ -0.91
USP3-217ENST00000560070 PRPF40AO75400 957 aaKnown RBP9.35□□□□□ -0.91
USP3-217ENST00000560070 NR1I2O75469 434 aa9.35□□□□□ -0.91
USP3-217ENST00000560070 TADA2AO75478 443 aa9.35□□□□□ -0.91
USP3-217ENST00000560070 THP07101 528 aa9.35□□□□□ -0.91
USP3-217ENST00000560070 PROZP22891 400 aa9.35□□□□□ -0.91
USP3-217ENST00000560070 IGFBP6P24592 240 aaPredicted RBP9.35□□□□□ -0.91
USP3-217ENST00000560070 GTF2F1P35269 517 aaKnown RBP eCLIP9.35□□□□□ -0.91
USP3-217ENST00000560070 TNFSF9P41273 254 aa9.35□□□□□ -0.91
USP3-217ENST00000560070 GRM5P41594 1212 aa9.35□□□□□ -0.91
USP3-217ENST00000560070 ACOT2P49753 483 aa9.35□□□□□ -0.91
USP3-217ENST00000560070 MCL1Q07820 350 aa9.35□□□□□ -0.91
USP3-217ENST00000560070 CAMK1Q14012 370 aa9.35□□□□□ -0.91
USP3-217ENST00000560070 L1TD1Q5T7N2 865 aaKnown RBP9.35□□□□□ -0.91
USP3-217ENST00000560070 SLC39A4Q6P5W5 647 aa9.35□□□□□ -0.91
USP3-217ENST00000560070 ZPBP2Q6X784 338 aa9.35□□□□□ -0.91
USP3-217ENST00000560070 KRBA2Q6ZNG9 492 aa9.35□□□□□ -0.91
USP3-217ENST00000560070 UNC13DQ70J99 1090 aa9.35□□□□□ -0.91
USP3-217ENST00000560070 TAS1R1Q7RTX1 841 aa9.35□□□□□ -0.91
USP3-217ENST00000560070 TMEM173Q86WV6 379 aaPredicted RBP9.35□□□□□ -0.91
USP3-217ENST00000560070 MAP4K3Q8IVH8 894 aa9.35□□□□□ -0.91
USP3-217ENST00000560070 COLGALT2Q8IYK4 626 aa9.35□□□□□ -0.91
USP3-217ENST00000560070 SLC39A11Q8N1S5 342 aa9.35□□□□□ -0.91
USP3-217ENST00000560070 GSTCDQ8NEC7 633 aa9.35□□□□□ -0.91
USP3-217ENST00000560070 HASPINQ8TF76 798 aa9.35□□□□□ -0.91
USP3-217ENST00000560070 POMGNT1Q8WZA1 660 aa9.35□□□□□ -0.91
USP3-217ENST00000560070 ERCC4Q92889 916 aaPredicted RBP9.35□□□□□ -0.91
USP3-217ENST00000560070 P2RX5Q93086 422 aa9.35□□□□□ -0.91
USP3-217ENST00000560070 IPO9Q96P70 1041 aaKnown RBP9.35□□□□□ -0.91
USP3-217ENST00000560070 PAAF1Q9BRP4 392 aa9.35□□□□□ -0.91
USP3-217ENST00000560070 MSTO1Q9BUK6 570 aa9.35□□□□□ -0.91
USP3-217ENST00000560070 COLEC11Q9BWP8 271 aa9.35□□□□□ -0.91
USP3-217ENST00000560070 ENTPD7Q9NQZ7 604 aa9.35□□□□□ -0.91
USP3-217ENST00000560070 TET1Q8NFU7 2136 aa9.35□□□□□ -0.91
USP3-217ENST00000560070 A0A0B4J269 797 aa9.34□□□□□ -0.91
USP3-217ENST00000560070 SMIM28A0A1B0GU29 152 aa9.34□□□□□ -0.91
USP3-217ENST00000560070 FRMD3A2A2Y4 597 aa9.34□□□□□ -0.91
USP3-217ENST00000560070 LACTBL1A8MY62 500 aa9.34□□□□□ -0.91
USP3-217ENST00000560070 C2CD2LO14523 706 aa9.34□□□□□ -0.91
USP3-217ENST00000560070 MEFVO15553 781 aaPredicted RBP9.34□□□□□ -0.91
USP3-217ENST00000560070 RPN1P04843 607 aaKnown RBP9.34□□□□□ -0.91
USP3-217ENST00000560070 CLTAP09496 248 aa9.34□□□□□ -0.91
USP3-217ENST00000560070 NRIP1P48552 1158 aa9.34□□□□□ -0.91
USP3-217ENST00000560070 PLCB3Q01970 1234 aa9.34□□□□□ -0.91
USP3-217ENST00000560070 NOLC1Q14978 699 aaKnown RBP eCLIP9.34□□□□□ -0.91
USP3-217ENST00000560070 SLC10A6Q3KNW5 377 aa9.34□□□□□ -0.91
USP3-217ENST00000560070 KMT5BQ4FZB7 885 aa9.34□□□□□ -0.91
USP3-217ENST00000560070 FAM26FQ5R3K3 315 aa9.34□□□□□ -0.91
USP3-217ENST00000560070 ISM2Q6H9L7 571 aa9.34□□□□□ -0.91
USP3-217ENST00000560070 ADGRD2Q7Z7M1 963 aa9.34□□□□□ -0.91
USP3-217ENST00000560070 VPS52Q8N1B4 723 aa9.34□□□□□ -0.91
USP3-217ENST00000560070 TMEM87AQ8NBN3 555 aa9.34□□□□□ -0.91
USP3-217ENST00000560070 RDH13Q8NBN7 331 aa9.34□□□□□ -0.91
USP3-217ENST00000560070 SLC17A8Q8NDX2 589 aa9.34□□□□□ -0.91
USP3-217ENST00000560070 ZSWIM2Q8NEG5 633 aa9.34□□□□□ -0.91
USP3-217ENST00000560070 C18orf25Q96B23 403 aaPredicted RBP9.34□□□□□ -0.91
USP3-217ENST00000560070 SAAL1Q96ER3 474 aa9.34□□□□□ -0.91
USP3-217ENST00000560070 TMEM169Q96HH4 297 aa9.34□□□□□ -0.91
USP3-217ENST00000560070 IGSF21Q96ID5 467 aa9.34□□□□□ -0.91
USP3-217ENST00000560070 ZMAT2Q96NC0 199 aaKnown RBP9.34□□□□□ -0.91
USP3-217ENST00000560070 TCF25Q9BQ70 676 aa9.34□□□□□ -0.91
USP3-217ENST00000560070 FAM213AQ9BRX8 229 aa9.34□□□□□ -0.91
USP3-217ENST00000560070 STRA6Q9BX79 667 aa9.34□□□□□ -0.91
USP3-217ENST00000560070 RPF1Q9H9Y2 349 aaKnown RBP9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms