RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 FUT10Q6P4F1 479 aa12.88□□□□□ -0.35
USP3-214ENST00000559718 OTOP3Q7RTS5 596 aa12.88□□□□□ -0.35
USP3-214ENST00000559718 PALB2Q86YC2 1186 aa12.88□□□□□ -0.35
USP3-214ENST00000559718 GLYCTKQ8IVS8 523 aa12.88□□□□□ -0.35
USP3-214ENST00000559718 HACE1Q8IYU2 909 aa12.88□□□□□ -0.35
USP3-214ENST00000559718 TMEM105Q8N8V8 129 aa12.88□□□□□ -0.35
USP3-214ENST00000559718 C8orf76Q96K31 380 aa12.88□□□□□ -0.35
USP3-214ENST00000559718 POLR3CQ9BUI4 534 aaPredicted RBP12.88□□□□□ -0.35
USP3-214ENST00000559718 COLEC11Q9BWP8 271 aa12.88□□□□□ -0.35
USP3-214ENST00000559718 FZD8Q9H461 694 aa12.88□□□□□ -0.35
USP3-214ENST00000559718 RXFP1Q9HBX9 757 aa12.88□□□□□ -0.35
USP3-214ENST00000559718 POLD4Q9HCU8 107 aa12.88□□□□□ -0.35
USP3-214ENST00000559718 CHST7Q9NS84 486 aa12.88□□□□□ -0.35
USP3-214ENST00000559718 LIMCH1Q9UPQ0 1083 aa12.88□□□□□ -0.35
USP3-214ENST00000559718 H0Y858 1186 aa12.87□□□□□ -0.35
USP3-214ENST00000559718 NR1I2O75469 434 aa12.87□□□□□ -0.35
USP3-214ENST00000559718 GLUD1P00367 558 aa12.87□□□□□ -0.35
USP3-214ENST00000559718 EDN1P05305 212 aa12.87□□□□□ -0.35
USP3-214ENST00000559718 OR52Z1P0C646 297 aa12.87□□□□□ -0.35
USP3-214ENST00000559718 LIG1P18858 919 aa12.87□□□□□ -0.35
USP3-214ENST00000559718 GRIK3Q13003 919 aa12.87□□□□□ -0.35
USP3-214ENST00000559718 NBR1Q14596 966 aa12.87□□□□□ -0.35
USP3-214ENST00000559718 ECM1Q16610 540 aa12.87□□□□□ -0.35
USP3-214ENST00000559718 PADI6Q6TGC4 694 aa12.87□□□□□ -0.35
USP3-214ENST00000559718 C15orf39Q6ZRI6 1047 aa12.87□□□□□ -0.35
USP3-214ENST00000559718 MCPH1Q8NEM0 835 aa12.87□□□□□ -0.35
USP3-214ENST00000559718 CMASQ8NFW8 434 aaPredicted RBP12.87□□□□□ -0.35
USP3-214ENST00000559718 HASPINQ8TF76 798 aa12.87□□□□□ -0.35
USP3-214ENST00000559718 RIN2Q8WYP3 895 aaPredicted RBP12.87□□□□□ -0.35
USP3-214ENST00000559718 ACSF2Q96CM8 615 aaPredicted RBP12.87□□□□□ -0.35
USP3-214ENST00000559718 NACC1Q96RE7 527 aa12.87□□□□□ -0.35
USP3-214ENST00000559718 KIFC3Q9BVG8 833 aa12.87□□□□□ -0.35
USP3-214ENST00000559718 PDZD7Q9H5P4 517 aa12.87□□□□□ -0.35
USP3-214ENST00000559718 KCNK12Q9HB15 430 aa12.87□□□□□ -0.35
USP3-214ENST00000559718 PRMT7Q9NVM4 692 aaPredicted RBP12.87□□□□□ -0.35
USP3-214ENST00000559718 ADAM28Q9UKQ2 775 aa12.87□□□□□ -0.35
USP3-214ENST00000559718 SSX2IPQ9Y2D8 614 aa12.87□□□□□ -0.35
USP3-214ENST00000559718 ARHGEF35A5YM69 484 aa12.86□□□□□ -0.35
USP3-214ENST00000559718 CASTOR2A6NHX0 329 aa12.86□□□□□ -0.35
USP3-214ENST00000559718 PTGESO14684 152 aa12.86□□□□□ -0.35
USP3-214ENST00000559718 TGM5O43548 720 aa12.86□□□□□ -0.35
USP3-214ENST00000559718 CYP11B2P19099 503 aa12.86□□□□□ -0.35
USP3-214ENST00000559718 RPA1P27694 616 aa12.86□□□□□ -0.35
USP3-214ENST00000559718 FAM187BQ17R55 369 aa12.86□□□□□ -0.35
USP3-214ENST00000559718 TTC38Q5R3I4 469 aa12.86□□□□□ -0.35
USP3-214ENST00000559718 EEF1DP3Q658K8 133 aa12.86□□□□□ -0.35
USP3-214ENST00000559718 PRSS55Q6UWB4 352 aaPredicted RBP12.86□□□□□ -0.35
USP3-214ENST00000559718 NOSTRINQ8IVI9 506 aa12.86□□□□□ -0.35
USP3-214ENST00000559718 ZBTB8OSQ8IWT0 167 aa12.86□□□□□ -0.35
USP3-214ENST00000559718 RSAD2Q8WXG1 361 aa12.86□□□□□ -0.35
USP3-214ENST00000559718 SMG7Q92540 1137 aaKnown RBP12.86□□□□□ -0.35
USP3-214ENST00000559718 ATOH1Q92858 354 aaPredicted RBP12.86□□□□□ -0.35
USP3-214ENST00000559718 ZNF707Q96C28 371 aaPredicted RBP12.86□□□□□ -0.35
USP3-214ENST00000559718 PRIMPOLQ96LW4 560 aa12.86□□□□□ -0.35
USP3-214ENST00000559718 FOXP1Q9H334 677 aaPredicted RBP12.86□□□□□ -0.35
USP3-214ENST00000559718 WDR6Q9NNW5 1121 aaKnown RBP12.86□□□□□ -0.35
USP3-214ENST00000559718 SNTG2Q9NY99 539 aa12.86□□□□□ -0.35
USP3-214ENST00000559718 DOCK6Q96HP0 2047 aa12.85□□□□□ -0.35
USP3-214ENST00000559718 NARSO43776 548 aaKnown RBP12.85□□□□□ -0.35
USP3-214ENST00000559718 TADA2AO75478 443 aa12.85□□□□□ -0.35
USP3-214ENST00000559718 RECQL4O94761 1208 aa12.85□□□□□ -0.35
USP3-214ENST00000559718 KIF4AO95239 1232 aa12.85□□□□□ -0.35
USP3-214ENST00000559718 PRKCBP05771 671 aa12.85□□□□□ -0.35
USP3-214ENST00000559718 HOXB3P14651 431 aaPredicted RBP12.85□□□□□ -0.35
USP3-214ENST00000559718 GBP2P32456 591 aaPredicted RBP12.85□□□□□ -0.35
USP3-214ENST00000559718 TUSC3Q13454 348 aa12.85□□□□□ -0.35
USP3-214ENST00000559718 PRPF4BQ13523 1007 aaKnown RBP12.85□□□□□ -0.35
USP3-214ENST00000559718 TDGQ13569 410 aa12.85□□□□□ -0.35
USP3-214ENST00000559718 HSP90AA2PQ14568 343 aaPredicted RBP12.85□□□□□ -0.35
USP3-214ENST00000559718 TMEM132AQ24JP5 1023 aa12.85□□□□□ -0.35
USP3-214ENST00000559718 USP41Q3LFD5 358 aa12.85□□□□□ -0.35
USP3-214ENST00000559718 RTP2Q5QGT7 225 aa12.85□□□□□ -0.35
USP3-214ENST00000559718 CWF19L1Q69YN2 538 aaKnown RBP12.85□□□□□ -0.35
USP3-214ENST00000559718 LILRA6Q6PI73 481 aa12.85□□□□□ -0.35
USP3-214ENST00000559718 C4orf32Q8N8J7 132 aa12.85□□□□□ -0.35
USP3-214ENST00000559718 FBXO18Q8NFZ0 1043 aa12.85□□□□□ -0.35
USP3-214ENST00000559718 ERMNQ8TAM6 284 aa12.85□□□□□ -0.35
USP3-214ENST00000559718 DEPTORQ8TB45 409 aa12.85□□□□□ -0.35
USP3-214ENST00000559718 MYADMQ96S97 322 aa12.85□□□□□ -0.35
USP3-214ENST00000559718 LLPHQ9BRT6 129 aaKnown RBP12.85□□□□□ -0.35
USP3-214ENST00000559718 CCDC113Q9H0I3 377 aa12.85□□□□□ -0.35
USP3-214ENST00000559718 NT5C3AQ9H0P0 336 aa12.85□□□□□ -0.35
USP3-214ENST00000559718 MFSD1Q9H3U5 465 aa12.85□□□□□ -0.35
USP3-214ENST00000559718 DOCK8Q8NF50 2099 aa12.85□□□□□ -0.35
USP3-214ENST00000559718 CLUHO75153 1309 aa12.85□□□□□ -0.35
USP3-214ENST00000559718 ZMYM2Q9UBW7 1377 aa12.84□□□□□ -0.35
USP3-214ENST00000559718 MTCL1Q9Y4B5 1905 aaKnown RBP12.84□□□□□ -0.35
USP3-214ENST00000559718 ACKR2O00590 384 aa12.84□□□□□ -0.35
USP3-214ENST00000559718 N4BP3O15049 544 aa12.84□□□□□ -0.35
USP3-214ENST00000559718 PI15O43692 258 aa12.84□□□□□ -0.35
USP3-214ENST00000559718 NPR3P17342 541 aa12.84□□□□□ -0.35
USP3-214ENST00000559718 IGFBP6P24592 240 aaPredicted RBP12.84□□□□□ -0.35
USP3-214ENST00000559718 CCT6AP40227 531 aaKnown RBP12.84□□□□□ -0.35
USP3-214ENST00000559718 NAMPTP43490 491 aa12.84□□□□□ -0.35
USP3-214ENST00000559718 NAB2Q15742 525 aa12.84□□□□□ -0.35
USP3-214ENST00000559718 MAPK6Q16659 721 aa12.84□□□□□ -0.35
USP3-214ENST00000559718 ERICH6BQ5W0A0 696 aa12.84□□□□□ -0.35
USP3-214ENST00000559718 FLCNQ8NFG4 579 aa12.84□□□□□ -0.35
USP3-214ENST00000559718 ST13P5Q8NFI4 369 aaPredicted RBP12.84□□□□□ -0.35
USP3-214ENST00000559718 KIF2CQ99661 725 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms