RNA–Protein interactions for RNA: ENST00000559511.5

SPG11-217, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 2

Gene SPG11, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-217ENST00000559511 RHOT2Q8IXI1 618 aa11.91□□□□□ -0.5
SPG11-217ENST00000559511 FBXL13Q8NEE6 735 aa11.91□□□□□ -0.5
SPG11-217ENST00000559511 DHX38Q92620 1227 aaKnown RBP11.91□□□□□ -0.5
SPG11-217ENST00000559511 ALG3Q92685 438 aa11.91□□□□□ -0.5
SPG11-217ENST00000559511 BICD1Q96G01 975 aa11.91□□□□□ -0.5
SPG11-217ENST00000559511 ZIM3Q96PE6 472 aa11.91□□□□□ -0.5
SPG11-217ENST00000559511 FAM213AQ9BRX8 229 aa11.91□□□□□ -0.5
SPG11-217ENST00000559511 TAF1DQ9H5J8 278 aaPredicted RBP11.91□□□□□ -0.5
SPG11-217ENST00000559511 RAB20Q9NX57 234 aa11.91□□□□□ -0.5
SPG11-217ENST00000559511 CTTNBP2NLQ9P2B4 639 aa11.91□□□□□ -0.5
SPG11-217ENST00000559511 AMACRQ9UHK6 382 aa11.91□□□□□ -0.5
SPG11-217ENST00000559511 TTC7AQ9ULT0 858 aaPredicted RBP11.91□□□□□ -0.5
SPG11-217ENST00000559511 CCDC66A2RUB6 948 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 RTN2O75298 545 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 CYP11B1P15538 503 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 GARTP22102 1010 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 EDNRBP24530 442 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 TCEAL1Q15170 157 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 XKR3Q5GH77 459 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 ALS2CLQ60I27 953 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 SEPT14Q6ZU15 432 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 DDX42Q86XP3 938 aaKnown RBP eCLIP11.9□□□□□ -0.5
SPG11-217ENST00000559511 MREGQ8N565 214 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 PIK3R5Q8WYR1 880 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 TATDN2Q93075 761 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 TMEM143Q96AN5 459 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 IFT74Q96LB3 600 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 RNPC3Q96LT9 517 aaKnown RBP11.9□□□□□ -0.5
SPG11-217ENST00000559511 PI4K2AQ9BTU6 479 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 TXNRD2Q9NNW7 524 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 MAFBQ9Y5Q3 323 aaPredicted RBP11.9□□□□□ -0.5
SPG11-217ENST00000559511 ALG6Q9Y672 507 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 GOLGA6CA6NDK9 693 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 HSF2BPO75031 334 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 ATG7O95352 703 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 GOLGA6DP0CG33 693 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 GZMAP12544 262 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 GTF2H1P32780 548 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 POLGP54098 1239 aaPredicted RBP11.9□□□□□ -0.5
SPG11-217ENST00000559511 HNRNPH2P55795 449 aaKnown RBP11.9□□□□□ -0.5
SPG11-217ENST00000559511 WNT7BP56706 349 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 GPC5P78333 572 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 ZNF211Q13398 564 aaPredicted RBP11.9□□□□□ -0.5
SPG11-217ENST00000559511 NAA35Q5VZE5 725 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 GPAT2Q6NUI2 795 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 IQCKQ8N0W5 287 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 WHAMMQ8TF30 809 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 ZNF516Q92618 1163 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 NT5C1BQ96P26 610 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 CARD9Q9H257 536 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 ZNF302Q9NR11 478 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 GOLGA6AQ9NYA3 693 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 RBPJLQ9UBG7 517 aa11.9□□□□□ -0.5
SPG11-217ENST00000559511 PLXNB2O15031 1838 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 TTI1O43156 1089 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 CALCAP01258 141 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 OATP04181 439 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 GJA5P36382 358 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 MARCKSL1P49006 195 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 Q3C1V9 767 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 TTMPQ5BVD1 217 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 LDLRAD1Q5T700 205 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 C11orf63Q6NUN7 778 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 AADACL2Q6P093 401 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 ARMC9Q7Z3E5 817 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 GOLGA6L1Q8N7Z2 621 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 ASAP3Q8TDY4 903 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 DDX1Q92499 740 aaKnown RBP11.89□□□□□ -0.51
SPG11-217ENST00000559511 KRT35Q92764 455 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 ARL8AQ96BM9 186 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 PKNOX2Q96KN3 472 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 CELF4Q9BZC1 486 aaKnown RBP11.89□□□□□ -0.51
SPG11-217ENST00000559511 HAPLN2Q9GZV7 340 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 NEUROG2Q9H2A3 272 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 ZNF233A6NK53 670 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 TMEM110-MUSTN1A8MSY1 372 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 KRT14P02533 472 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 UBA1P22314 1058 aaKnown RBP11.89□□□□□ -0.51
SPG11-217ENST00000559511 GLRA2P23416 452 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 COPB2P35606 906 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 ACTN2P35609 894 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 LIG4P49917 911 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 NLRP11P59045 1033 aaKnown RBP11.89□□□□□ -0.51
SPG11-217ENST00000559511 CDR2Q01850 454 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 POU5F1Q01860 360 aaKnown RBP11.89□□□□□ -0.51
SPG11-217ENST00000559511 CUL1Q13616 776 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 HLTFQ14527 1009 aaKnown RBP eCLIP11.89□□□□□ -0.51
SPG11-217ENST00000559511 ZSCAN26Q16670 478 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 LMBRD2Q68DH5 695 aaPredicted RBP11.89□□□□□ -0.51
SPG11-217ENST00000559511 C15orf39Q6ZRI6 1047 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 ADAT2Q7Z6V5 191 aaKnown RBP11.89□□□□□ -0.51
SPG11-217ENST00000559511 USP37Q86T82 979 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 CEP89Q96ST8 783 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 PORCNQ9H237 461 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 SLITRK6Q9H5Y7 841 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 DHX33Q9H6R0 707 aaKnown RBP11.89□□□□□ -0.51
SPG11-217ENST00000559511 ERVK-5Q9HDB9 667 aa11.89□□□□□ -0.51
SPG11-217ENST00000559511 DIS3Q9Y2L1 958 aaKnown RBP11.89□□□□□ -0.51
SPG11-217ENST00000559511 GOLGA8KD6RF30 607 aa11.88□□□□□ -0.51
SPG11-217ENST00000559511 EXTL3O43909 919 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms