RNA–Protein interactions for RNA: ENST00000558040.5

SNX1-203, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 774 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-203ENST00000558040 BRSK2Q8IWQ3 736 aa18.33■□□□□ 0.52
SNX1-203ENST00000558040 DRC7Q8IY82 874 aa18.33■□□□□ 0.52
SNX1-203ENST00000558040 SLC35C1Q96A29 364 aa18.33■□□□□ 0.52
SNX1-203ENST00000558040 FNBP1Q96RU3 617 aa18.33■□□□□ 0.52
SNX1-203ENST00000558040 CCDC94Q9BW85 323 aaPredicted RBP18.33■□□□□ 0.52
SNX1-203ENST00000558040 HIPK3Q9H422 1215 aa18.33■□□□□ 0.52
SNX1-203ENST00000558040 INTS13Q9NVM9 706 aa18.33■□□□□ 0.52
SNX1-203ENST00000558040 CPSF3Q9UKF6 684 aaKnown RBP18.33■□□□□ 0.52
SNX1-203ENST00000558040 PADI3Q9ULW8 664 aa18.33■□□□□ 0.52
SNX1-203ENST00000558040 CD52P31358 61 aa18.32■□□□□ 0.52
SNX1-203ENST00000558040 GRM5P41594 1212 aa18.32■□□□□ 0.52
SNX1-203ENST00000558040 MCCD1P59942 119 aaPredicted RBP18.32■□□□□ 0.52
SNX1-203ENST00000558040 FAAP100Q0VG06 881 aa18.32■□□□□ 0.52
SNX1-203ENST00000558040 TWF2Q6IBS0 349 aaKnown RBP18.32■□□□□ 0.52
SNX1-203ENST00000558040 TRAF7Q6Q0C0 670 aa18.32■□□□□ 0.52
SNX1-203ENST00000558040 PARD3BQ8TEW8 1205 aa18.32■□□□□ 0.52
SNX1-203ENST00000558040 AGO3Q9H9G7 860 aaKnown RBP18.32■□□□□ 0.52
SNX1-203ENST00000558040 RPF1Q9H9Y2 349 aaKnown RBP18.32■□□□□ 0.52
SNX1-203ENST00000558040 A0A1W2PQC6 194 aa18.31■□□□□ 0.52
SNX1-203ENST00000558040 GOLGA6L6A8MZA4 724 aa18.31■□□□□ 0.52
SNX1-203ENST00000558040 TULP1O00294 542 aaPredicted RBP18.31■□□□□ 0.52
SNX1-203ENST00000558040 TEX33O43247 280 aa18.31■□□□□ 0.52
SNX1-203ENST00000558040 IL18RAPO95256 599 aa18.31■□□□□ 0.52
SNX1-203ENST00000558040 CLTBP09497 229 aa18.31■□□□□ 0.52
SNX1-203ENST00000558040 STAG3L1P0CL83 205 aa18.31■□□□□ 0.52
SNX1-203ENST00000558040 GTF2H1P32780 548 aa18.31■□□□□ 0.52
SNX1-203ENST00000558040 TNFSF9P41273 254 aa18.31■□□□□ 0.52
SNX1-203ENST00000558040 LRRC26Q2I0M4 334 aa18.31■□□□□ 0.52
SNX1-203ENST00000558040 SEZ6Q53EL9 994 aa18.31■□□□□ 0.52
SNX1-203ENST00000558040 ZBTB41Q5SVQ8 909 aa18.31■□□□□ 0.52
SNX1-203ENST00000558040 VSTM4Q8IW00 320 aa18.31■□□□□ 0.52
SNX1-203ENST00000558040 HACE1Q8IYU2 909 aa18.31■□□□□ 0.52
SNX1-203ENST00000558040 CCDC127Q96BQ5 260 aa18.31■□□□□ 0.52
SNX1-203ENST00000558040 ACAP3Q96P50 834 aa18.31■□□□□ 0.52
SNX1-203ENST00000558040 CENPFP49454 3210 aa18.31■□□□□ 0.52
SNX1-203ENST00000558040 P4HA2O15460 535 aa18.3■□□□□ 0.52
SNX1-203ENST00000558040 TRIM49P0CI25 452 aa18.3■□□□□ 0.52
SNX1-203ENST00000558040 TRIM49CP0CI26 452 aa18.3■□□□□ 0.52
SNX1-203ENST00000558040 DLATP10515 647 aaKnown RBP18.3■□□□□ 0.52
SNX1-203ENST00000558040 FMO5P49326 533 aa18.3■□□□□ 0.52
SNX1-203ENST00000558040 RAB27AP51159 221 aa18.3■□□□□ 0.52
SNX1-203ENST00000558040 YARSP54577 528 aaKnown RBP18.3■□□□□ 0.52
SNX1-203ENST00000558040 OSTNP61366 133 aa18.3■□□□□ 0.52
SNX1-203ENST00000558040 CETN1Q12798 172 aa18.3■□□□□ 0.52
SNX1-203ENST00000558040 CEP120Q8N960 986 aa18.3■□□□□ 0.52
SNX1-203ENST00000558040 PDLIM2Q96JY6 352 aa18.3■□□□□ 0.52
SNX1-203ENST00000558040 ERGIC2Q96RQ1 377 aa18.3■□□□□ 0.52
SNX1-203ENST00000558040 EIF2AQ9BY44 585 aaKnown RBP18.3■□□□□ 0.52
SNX1-203ENST00000558040 IFIH1Q9BYX4 1025 aaKnown RBP18.3■□□□□ 0.52
SNX1-203ENST00000558040 TMEM39AQ9NV64 488 aa18.3■□□□□ 0.52
SNX1-203ENST00000558040 ITIH6Q6UXX5 1313 aa18.29■□□□□ 0.52
SNX1-203ENST00000558040 GTPBP10A4D1E9 387 aaKnown RBP18.29■□□□□ 0.52
SNX1-203ENST00000558040 LRRIQ3A6PVS8 624 aaPredicted RBP18.29■□□□□ 0.52
SNX1-203ENST00000558040 SKIP12755 728 aa18.29■□□□□ 0.52
SNX1-203ENST00000558040 TNNI1P19237 187 aa18.29■□□□□ 0.52
SNX1-203ENST00000558040 EN2P19622 333 aaPredicted RBP18.29■□□□□ 0.52
SNX1-203ENST00000558040 PBX1P40424 430 aa18.29■□□□□ 0.52
SNX1-203ENST00000558040 AP3M2P53677 418 aa18.29■□□□□ 0.52
SNX1-203ENST00000558040 DLG4P78352 724 aa18.29■□□□□ 0.52
SNX1-203ENST00000558040 CLDN10P78369 228 aa18.29■□□□□ 0.52
SNX1-203ENST00000558040 MYL7Q01449 175 aa18.29■□□□□ 0.52
SNX1-203ENST00000558040 ENOX2Q16206 610 aaKnown RBP18.29■□□□□ 0.52
SNX1-203ENST00000558040 UBXN11Q5T124 520 aa18.29■□□□□ 0.52
SNX1-203ENST00000558040 SPECC1LQ69YQ0 1117 aa18.29■□□□□ 0.52
SNX1-203ENST00000558040 TMC6Q7Z403 805 aa18.29■□□□□ 0.52
SNX1-203ENST00000558040 CD302Q8IX05 232 aa18.29■□□□□ 0.52
SNX1-203ENST00000558040 PLEKHO2Q8TD55 490 aa18.29■□□□□ 0.52
SNX1-203ENST00000558040 FAM212AQ96EL1 285 aa18.29■□□□□ 0.52
SNX1-203ENST00000558040 PCMTD1Q96MG8 357 aaPredicted RBP18.29■□□□□ 0.52
SNX1-203ENST00000558040 CGRRF1Q99675 332 aa18.29■□□□□ 0.52
SNX1-203ENST00000558040 FTHL17Q9BXU8 183 aa18.29■□□□□ 0.52
SNX1-203ENST00000558040 MMRN2Q9H8L6 949 aa18.29■□□□□ 0.52
SNX1-203ENST00000558040 PDE11AQ9HCR9 933 aa18.29■□□□□ 0.52
SNX1-203ENST00000558040 TOPORSQ9NS56 1045 aaPredicted RBP18.29■□□□□ 0.52
SNX1-203ENST00000558040 TBX21Q9UL17 535 aa18.29■□□□□ 0.52
SNX1-203ENST00000558040 PMM2O15305 246 aa18.28■□□□□ 0.52
SNX1-203ENST00000558040 CXCL8P10145 99 aa18.28■□□□□ 0.52
SNX1-203ENST00000558040 MXI1P50539 228 aa18.28■□□□□ 0.52
SNX1-203ENST00000558040 MBTPS1Q14703 1052 aa18.28■□□□□ 0.52
SNX1-203ENST00000558040 SYCP1Q15431 976 aa18.28■□□□□ 0.52
SNX1-203ENST00000558040 GBP6Q6ZN66 633 aa18.28■□□□□ 0.52
SNX1-203ENST00000558040 WDR49Q8IV35 697 aa18.28■□□□□ 0.52
SNX1-203ENST00000558040 APBB2Q92870 758 aa18.28■□□□□ 0.52
SNX1-203ENST00000558040 IQCDQ96DY2 449 aa18.28■□□□□ 0.52
SNX1-203ENST00000558040 PPP1R9BQ96SB3 815 aa18.28■□□□□ 0.52
SNX1-203ENST00000558040 TRAIPQ9BWF2 469 aa18.28■□□□□ 0.52
SNX1-203ENST00000558040 PPP1R12CQ9BZL4 782 aa18.28■□□□□ 0.52
SNX1-203ENST00000558040 ASB7Q9H672 318 aa18.28■□□□□ 0.52
SNX1-203ENST00000558040 PLEKHA5Q9HAU0 1116 aa18.28■□□□□ 0.52
SNX1-203ENST00000558040 TMEM8AQ9HCN3 771 aa18.28■□□□□ 0.52
SNX1-203ENST00000558040 FAM105AQ9NUU6 356 aa18.28■□□□□ 0.52
SNX1-203ENST00000558040 IMPACTQ9P2X3 320 aa18.28■□□□□ 0.52
SNX1-203ENST00000558040 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.28■□□□□ 0.525e-7■■□□□ 13.4
SNX1-203ENST00000558040 TANC1Q9C0D5 1861 aa18.28■□□□□ 0.52
SNX1-203ENST00000558040 TPM1P09493 284 aa18.27■□□□□ 0.52
SNX1-203ENST00000558040 GCLMP48507 274 aa18.27■□□□□ 0.52
SNX1-203ENST00000558040 PPP3CAQ08209 521 aa18.27■□□□□ 0.52
SNX1-203ENST00000558040 TRIM14Q14142 442 aa18.27■□□□□ 0.52
SNX1-203ENST00000558040 DSC3Q14574 896 aa18.27■□□□□ 0.52
SNX1-203ENST00000558040 EXOC3L4Q17RC7 722 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms