RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 ADSSL1Q8N142 457 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 ALLCQ8N6M5 410 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 METTL25Q8N6Q8 603 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 EGLN2Q96KS0 407 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 BIRC8Q96P09 236 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 ERP44Q9BS26 406 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 PLVAPQ9BX97 442 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 OSBPL6Q9BZF3 934 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 UNKQ9C0B0 810 aaKnown RBP14.68□□□□□ -0.06
SHMT2-226ENST00000556825 LRRC27Q9C0I9 530 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 TMEM60Q9H2L4 133 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 EHD1Q9H4M9 534 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 ZDHHC18Q9NUE0 388 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 TBC1D23Q9NUY8 699 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 FKBP14Q9NWM8 211 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 NDE1Q9NXR1 346 aa14.68□□□□□ -0.06
SHMT2-226ENST00000556825 FLT4P35916 1363 aa14.67□□□□□ -0.06
SHMT2-226ENST00000556825 F8W8V4 182 aa14.67□□□□□ -0.06
SHMT2-226ENST00000556825 PGRMC1O00264 195 aaKnown RBP14.67□□□□□ -0.06
SHMT2-226ENST00000556825 KCNK3O14649 394 aa14.67□□□□□ -0.06
SHMT2-226ENST00000556825 S100A5P33763 92 aa14.67□□□□□ -0.06
SHMT2-226ENST00000556825 PDK3Q15120 406 aa14.67□□□□□ -0.06
SHMT2-226ENST00000556825 RPS6KA1Q15418 735 aa14.67□□□□□ -0.06
SHMT2-226ENST00000556825 MTHFSDQ2M296 383 aaKnown RBP14.67□□□□□ -0.06
SHMT2-226ENST00000556825 ASTE1Q2TB18 679 aaPredicted RBP14.67□□□□□ -0.06
SHMT2-226ENST00000556825 ESCO1Q5FWF5 840 aa14.67□□□□□ -0.06
SHMT2-226ENST00000556825 ANKMY2Q8IV38 441 aa14.67□□□□□ -0.06
SHMT2-226ENST00000556825 ANKRD42Q8N9B4 389 aa14.67□□□□□ -0.06
SHMT2-226ENST00000556825 OR6Y1Q8NGX8 325 aa14.67□□□□□ -0.06
SHMT2-226ENST00000556825 MED30Q96HR3 178 aa14.67□□□□□ -0.06
SHMT2-226ENST00000556825 TUBB6Q9BUF5 446 aa14.67□□□□□ -0.06
SHMT2-226ENST00000556825 SEZ6LQ9BYH1 1024 aa14.67□□□□□ -0.06
SHMT2-226ENST00000556825 ROPN1BQ9BZX4 212 aaPredicted RBP14.67□□□□□ -0.06
SHMT2-226ENST00000556825 ROPN1Q9HAT0 212 aaPredicted RBP14.67□□□□□ -0.06
SHMT2-226ENST00000556825 TRNAU1APQ9NX07 287 aaKnown RBP14.67□□□□□ -0.06
SHMT2-226ENST00000556825 PLK2Q9NYY3 685 aa14.67□□□□□ -0.06
SHMT2-226ENST00000556825 GTF3C4Q9UKN8 822 aa14.67□□□□□ -0.06
SHMT2-226ENST00000556825 AK5Q9Y6K8 562 aa14.67□□□□□ -0.06
SHMT2-226ENST00000556825 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.67□□□□□ -0.06
SHMT2-226ENST00000556825 SOS2Q07890 1332 aaPredicted RBP14.67□□□□□ -0.06
SHMT2-226ENST00000556825 KRIT1O00522 736 aa14.66□□□□□ -0.06
SHMT2-226ENST00000556825 BAIAP3O94812 1187 aa14.66□□□□□ -0.06
SHMT2-226ENST00000556825 HSPA1AP0DMV8 641 aaKnown RBP14.66□□□□□ -0.06
SHMT2-226ENST00000556825 HSPA1BP0DMV9 641 aaKnown RBP14.66□□□□□ -0.06
SHMT2-226ENST00000556825 HMOX2P30519 316 aa14.66□□□□□ -0.06
SHMT2-226ENST00000556825 SLC1A4P43007 532 aa14.66□□□□□ -0.06
SHMT2-226ENST00000556825 PHKA2P46019 1235 aa14.66□□□□□ -0.06
SHMT2-226ENST00000556825 SLCO1A2P46721 670 aa14.66□□□□□ -0.06
SHMT2-226ENST00000556825 MOGSQ13724 837 aa14.66□□□□□ -0.06
SHMT2-226ENST00000556825 RASGRF1Q13972 1273 aa14.66□□□□□ -0.06
SHMT2-226ENST00000556825 TAF1BQ53T94 588 aaPredicted RBP14.66□□□□□ -0.06
SHMT2-226ENST00000556825 MAP3K21Q5TCX8 1036 aa14.66□□□□□ -0.06
SHMT2-226ENST00000556825 PCNX4Q63HM2 1172 aa14.66□□□□□ -0.06
SHMT2-226ENST00000556825 TTC23LQ6PF05 361 aa14.66□□□□□ -0.06
SHMT2-226ENST00000556825 OSTM1Q86WC4 334 aa14.66□□□□□ -0.06
SHMT2-226ENST00000556825 RASSF3Q86WH2 238 aa14.66□□□□□ -0.06
SHMT2-226ENST00000556825 SENP6Q9GZR1 1112 aaPredicted RBP14.66□□□□□ -0.06
SHMT2-226ENST00000556825 CRNNQ9UBG3 495 aaPredicted RBP14.66□□□□□ -0.06
SHMT2-226ENST00000556825 KLHL3Q9UH77 587 aa14.66□□□□□ -0.06
SHMT2-226ENST00000556825 ZNF536O15090 1300 aa14.66□□□□□ -0.06
SHMT2-226ENST00000556825 USP54Q70EL1 1684 aa14.66□□□□□ -0.06
SHMT2-226ENST00000556825 MARF1Q9Y4F3 1742 aaKnown RBP14.66□□□□□ -0.06
SHMT2-226ENST00000556825 CFAP69A5D8W1 941 aa14.66□□□□□ -0.06
SHMT2-226ENST00000556825 CLASP2O75122 1294 aaKnown RBP14.66□□□□□ -0.06
SHMT2-226ENST00000556825 ESRRAP11474 423 aaPredicted RBP14.66□□□□□ -0.06
SHMT2-226ENST00000556825 PCYT1AP49585 367 aa14.66□□□□□ -0.06
SHMT2-226ENST00000556825 ENTPD1P49961 510 aa14.66□□□□□ -0.06
SHMT2-226ENST00000556825 VCPP55072 806 aaKnown RBP14.66□□□□□ -0.06
SHMT2-226ENST00000556825 PPP2R5BQ15173 497 aa14.66□□□□□ -0.06
SHMT2-226ENST00000556825 RILPL1Q5EBL4 403 aa14.66□□□□□ -0.06
SHMT2-226ENST00000556825 ACMSDQ8TDX5 336 aa14.66□□□□□ -0.06
SHMT2-226ENST00000556825 ERGIC2Q96RQ1 377 aa14.66□□□□□ -0.06
SHMT2-226ENST00000556825 CRAMP1Q96RY5 1269 aa14.66□□□□□ -0.06
SHMT2-226ENST00000556825 TUBGCP2Q9BSJ2 902 aa14.66□□□□□ -0.06
SHMT2-226ENST00000556825 NUP85Q9BW27 656 aa14.66□□□□□ -0.06
SHMT2-226ENST00000556825 MLXIPLQ9NP71 852 aa14.66□□□□□ -0.06
SHMT2-226ENST00000556825 KCNK9Q9NPC2 374 aa14.66□□□□□ -0.06
SHMT2-226ENST00000556825 A0A0G2JLW4 131 aa14.65□□□□□ -0.06
SHMT2-226ENST00000556825 GOLGA8CPA6NN73 597 aa14.65□□□□□ -0.06
SHMT2-226ENST00000556825 RBAK-RBAKDNI3L0D1 243 aa14.65□□□□□ -0.06
SHMT2-226ENST00000556825 BUD23O43709 281 aaKnown RBP14.65□□□□□ -0.06
SHMT2-226ENST00000556825 FARP2O94887 1054 aaPredicted RBP14.65□□□□□ -0.06
SHMT2-226ENST00000556825 VCLP18206 1134 aa14.65□□□□□ -0.06
SHMT2-226ENST00000556825 KCNC4Q03721 635 aa14.65□□□□□ -0.06
SHMT2-226ENST00000556825 KLRC3Q07444 240 aa14.65□□□□□ -0.06
SHMT2-226ENST00000556825 PDAP1Q13442 181 aaKnown RBP14.65□□□□□ -0.06
SHMT2-226ENST00000556825 ELMSAN1Q6PJG2 1045 aa14.65□□□□□ -0.06
SHMT2-226ENST00000556825 PPP1R21Q6ZMI0 780 aa14.65□□□□□ -0.06
SHMT2-226ENST00000556825 RFPL4BQ6ZWI9 263 aa14.65□□□□□ -0.06
SHMT2-226ENST00000556825 GIPC2Q8TF65 315 aa14.65□□□□□ -0.06
SHMT2-226ENST00000556825 MCUR1Q96AQ8 359 aa14.65□□□□□ -0.06
SHMT2-226ENST00000556825 MRPS26Q9BYN8 205 aaKnown RBP14.65□□□□□ -0.06
SHMT2-226ENST00000556825 ARMC7Q9H6L4 198 aa14.65□□□□□ -0.06
SHMT2-226ENST00000556825 HERC5Q9UII4 1024 aaKnown RBP14.65□□□□□ -0.06
SHMT2-226ENST00000556825 ZFP69BQ9UJL9 534 aa14.65□□□□□ -0.06
SHMT2-226ENST00000556825 KIAA1257Q9ULG3 409 aa14.65□□□□□ -0.06
SHMT2-226ENST00000556825 ATP5DP30049 168 aa14.65□□□□□ -0.06
SHMT2-226ENST00000556825 RCVRNP35243 200 aa14.65□□□□□ -0.06
SHMT2-226ENST00000556825 AP2B1P63010 937 aa14.65□□□□□ -0.06
SHMT2-226ENST00000556825 XIAPP98170 497 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms