RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-223	ENST00000551623	IQCE	Q6IPM2	695 aa		3.03	□□□□□ -1.92
PTCH1-223	ENST00000551623	C17orf99	Q6UX52	265 aa		3.03	□□□□□ -1.92
PTCH1-223	ENST00000551623	GAREM2	Q75VX8	874 aa		3.03	□□□□□ -1.92
PTCH1-223	ENST00000551623	PPP1R42	Q7Z4L9	355 aa		3.03	□□□□□ -1.92
PTCH1-223	ENST00000551623	ANKRD13A	Q8IZ07	590 aa		3.03	□□□□□ -1.92
PTCH1-223	ENST00000551623	STPG3	Q8N7X2	389 aa		3.03	□□□□□ -1.92
PTCH1-223	ENST00000551623	TBC1D16	Q8TBP0	767 aa		3.03	□□□□□ -1.92
PTCH1-223	ENST00000551623	PHOSPHO1	Q8TCT1	267 aa		3.03	□□□□□ -1.92
PTCH1-223	ENST00000551623	BRI3BP	Q8WY22	251 aa		3.03	□□□□□ -1.92
PTCH1-223	ENST00000551623	SHD	Q96IW2	340 aa		3.03	□□□□□ -1.92
PTCH1-223	ENST00000551623	CLMN	Q96JQ2	1002 aa		3.03	□□□□□ -1.92
PTCH1-223	ENST00000551623	BBC3	Q96PG8	261 aa	Predicted RBP	3.03	□□□□□ -1.92
PTCH1-223	ENST00000551623	EYA3	Q99504	573 aa		3.03	□□□□□ -1.92
PTCH1-223	ENST00000551623	CDX2	Q99626	313 aa	Predicted RBP	3.03	□□□□□ -1.92
PTCH1-223	ENST00000551623	C12orf65	Q9H3J6	166 aa	Known RBP	3.03	□□□□□ -1.92
PTCH1-223	ENST00000551623	ASH2L	Q9UBL3	628 aa		3.03	□□□□□ -1.92
PTCH1-223	ENST00000551623	ZNHIT2	Q9UHR6	403 aa		3.03	□□□□□ -1.92
PTCH1-223	ENST00000551623	FBXL7	Q9UJT9	491 aa		3.03	□□□□□ -1.92
PTCH1-223	ENST00000551623	RIPOR2	Q9Y4F9	1068 aa		3.03	□□□□□ -1.92
PTCH1-223	ENST00000551623	LAMB2	P55268	1798 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	ALPK3	Q96L96	1907 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	KCNQ3	O43525	872 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	MYO1B	O43795	1136 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	KCNH1	O95259	989 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	CKM	P06732	381 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	HOXD10	P28358	340 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	CD38	P28907	300 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	TNNT2	P45379	298 aa	Predicted RBP	3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	PIP4K2A	P48426	406 aa	Predicted RBP	3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	RRAD	P55042	308 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	UBXN2A	P68543	259 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	SMAD3	P84022	425 aa	Known RBP	3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	HHEX	Q03014	270 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	KIF22	Q14807	665 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	NOLC1	Q14978	699 aa	Known RBP eCLIP	3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	SKIDA1	Q1XH10	827 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	ZMAT1	Q5H9K5	638 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	DACT2	Q5SW24	774 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	STRIP1	Q5VSL9	837 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	DDX46	Q7L014	1031 aa	Known RBP	3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	SGMS1	Q86VZ5	419 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	FAM43A	Q8N2R8	423 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	TTLL11	Q8NHH1	800 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	NPLOC4	Q8TAT6	608 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	RASGRP4	Q8TDF6	673 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	FRS2	Q8WU20	508 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	ASB2	Q96Q27	587 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	SIN3A	Q96ST3	1273 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	UTP14A	Q9BVJ6	771 aa	Known RBP	3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	ARHGAP39	Q9C0H5	1083 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	DEFB129	Q9H1M3	183 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	SMOC1	Q9H4F8	434 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	METTL5	Q9NRN9	209 aa	Known RBP	3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	GPRC5B	Q9NZH0	403 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	ARHGAP20	Q9P2F6	1191 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	AKT3	Q9Y243	479 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	EFR3B	Q9Y2G0	817 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	NR2E1	Q9Y466	385 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	NUP98	P52948	1817 aa		3.02	□□□□□ -1.93
PTCH1-223	ENST00000551623	POLR2A	P24928	1970 aa	Known RBP	3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623	CDH23	Q9H251	3354 aa		3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623	MED23	Q9ULK4	1368 aa		3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623	TAF1	P21675	1872 aa		3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623	PFAS	O15067	1338 aa		3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623	SH3TC1	Q8TE82	1336 aa		3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623	CAPN14	A8MX76	684 aa		3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623		H7BY64	318 aa		3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623	TCERG1	O14776	1098 aa	Known RBP	3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623	TBX1	O43435	398 aa		3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623	HTATSF1	O43719	755 aa	Known RBP	3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623	CUTA	O60888	179 aa		3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623	GPT	P24298	496 aa		3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623	GPSM2	P81274	684 aa		3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623	HDLBP	Q00341	1268 aa	Known RBP	3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623	SLC7A5	Q01650	507 aa		3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623	SUPT20HL1	Q3ZLR7	823 aa		3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623	AKNAD1	Q5T1N1	836 aa		3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623	LCE1A	Q5T7P2	110 aa		3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623	MBNL2	Q5VZF2	373 aa	Known RBP	3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623	NECAB2	Q7Z6G3	386 aa		3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623	ADGRG3	Q86Y34	549 aa		3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623	DIO2	Q92813	273 aa		3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623	OPTN	Q96CV9	577 aa		3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623	PAWR	Q96IZ0	340 aa	Known RBP	3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623	LRFN3	Q9BTN0	628 aa		3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623	KCNH6	Q9H252	994 aa		3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623	TTYH1	Q9H313	450 aa	Predicted RBP	3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623	MSL2	Q9HCI7	577 aa		3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623	PLA2G3	Q9NZ20	509 aa		3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623	OGDHL	Q9ULD0	1010 aa		3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623	SLC12A7	Q9Y666	1083 aa		3.01	□□□□□ -1.93
PTCH1-223	ENST00000551623	XDH	P47989	1333 aa		3	□□□□□ -1.93
PTCH1-223	ENST00000551623	MYPN	Q86TC9	1320 aa		3	□□□□□ -1.93
PTCH1-223	ENST00000551623	OTOF	Q9HC10	1997 aa		3	□□□□□ -1.93
PTCH1-223	ENST00000551623	CCL15-CCL14	A0A0B4J2E2	113 aa		3	□□□□□ -1.93
PTCH1-223	ENST00000551623	ZAR1L	A6NP61	321 aa		3	□□□□□ -1.93
PTCH1-223	ENST00000551623	ARHGAP6	O43182	974 aa		3	□□□□□ -1.93
PTCH1-223	ENST00000551623	MAFK	O60675	156 aa		3	□□□□□ -1.93
PTCH1-223	ENST00000551623	WDHD1	O75717	1129 aa	Predicted RBP	3	□□□□□ -1.93

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