RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 PPP3CAQ08209 521 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 RASA3Q14644 834 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 LONRF1Q17RB8 773 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 CCDC38Q502W7 563 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 SGO2Q562F6 1265 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 NUGGCQ68CJ6 796 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 CHADLQ6NUI6 762 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 PPP1R21Q6ZMI0 780 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 ARHGEF18Q6ZSZ5 1173 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 CEP128Q6ZU80 1094 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 ASRGL1Q7L266 308 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 NOP9Q86U38 636 aaKnown RBP9.37□□□□□ -0.91
TDP1-204ENST00000545686 RELL1Q8IUW5 271 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 RIBC1Q8N443 379 aaPredicted RBP9.37□□□□□ -0.91
TDP1-204ENST00000545686 UHMK1Q8TAS1 419 aaKnown RBP9.37□□□□□ -0.91
TDP1-204ENST00000545686 NSMCE1Q8WV22 266 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 SHC3Q92529 594 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 ZNF653Q96CK0 615 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 KLHL29Q96CT2 875 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 MAGEB18Q96M61 343 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 ACCSQ96QU6 501 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 DDX23Q9BUQ8 820 aaKnown RBP9.37□□□□□ -0.91
TDP1-204ENST00000545686 TRIM7Q9C029 511 aa9.37□□□□□ -0.91
TDP1-204ENST00000545686 ZC3H12CQ9C0D7 883 aaKnown RBP9.37□□□□□ -0.91
TDP1-204ENST00000545686 LARSQ9P2J5 1176 aaKnown RBP9.37□□□□□ -0.91
TDP1-204ENST00000545686 ARID2Q68CP9 1835 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 IGF2BP3O00425 579 aaKnown RBP eCLIP9.36□□□□□ -0.91
TDP1-204ENST00000545686 CHMP2AO43633 222 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 ANP32DO95626 131 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 GYS1P13807 737 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 MFAP3P55082 362 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 SNAP25P60880 206 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 KCNJ2P63252 427 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 DLG4P78352 724 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 FMO1Q01740 532 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 MYO1EQ12965 1108 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 STRN3Q13033 797 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 ABCB5Q2M3G0 1257 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 ACCSLQ4AC99 568 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 C1orf220Q5T0J3 134 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 ZNF746Q6NUN9 644 aaPredicted RBP9.36□□□□□ -0.91
TDP1-204ENST00000545686 DAW1Q8N136 415 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 XXYLT1Q8NBI6 393 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 BBOF1Q8ND07 529 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 AGAP11Q8TF27 550 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 LXNQ9BS40 222 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 TRAIPQ9BWF2 469 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 TEKT3Q9BXF9 490 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 ST6GALNAC4Q9H4F1 302 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 ASIC3Q9UHC3 531 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 PRR12Q9ULL5 1215 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 COL11A2P13942 1736 aaPredicted RBP9.36□□□□□ -0.91
TDP1-204ENST00000545686 SCN9AQ15858 1988 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 ATRNL1Q5VV63 1379 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 RIMBP2O15034 1052 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 CDH16O75309 829 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 SGPL1O95470 568 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 ACSL3O95573 720 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 DLATP10515 647 aaKnown RBP9.36□□□□□ -0.91
TDP1-204ENST00000545686 SCP2P22307 547 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 CCNG1P51959 295 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 FKBP1AP62942 108 aaKnown RBP9.36□□□□□ -0.91
TDP1-204ENST00000545686 LACTBP83111 547 aaPredicted RBP9.36□□□□□ -0.91
TDP1-204ENST00000545686 CDR2Q01850 454 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 CENPCQ03188 943 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 MTFR1Q15390 333 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 CEP55Q53EZ4 464 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 ZFPM1Q8IX07 1006 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 BANK1Q8NDB2 785 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 CNKSR1Q969H4 720 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 FAM81BQ96LP2 452 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 RAB3IPQ96QF0 476 aaPredicted RBP9.36□□□□□ -0.91
TDP1-204ENST00000545686 IWS1Q96ST2 819 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 RIT2Q99578 217 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 FOXP3Q9BZS1 431 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 UNC45AQ9H3U1 944 aa9.36□□□□□ -0.91
TDP1-204ENST00000545686 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.35□□□□□ -0.91
TDP1-204ENST00000545686 DDTLA6NHG4 134 aaPredicted RBP9.35□□□□□ -0.91
TDP1-204ENST00000545686 LIN7AO14910 233 aaPredicted RBP9.35□□□□□ -0.91
TDP1-204ENST00000545686 ZBTB39O15060 712 aa9.35□□□□□ -0.91
TDP1-204ENST00000545686 ATMINO43313 823 aaPredicted RBP9.35□□□□□ -0.91
TDP1-204ENST00000545686 ATP5HO75947 161 aa9.35□□□□□ -0.91
TDP1-204ENST00000545686 ABHD2P08910 425 aa9.35□□□□□ -0.91
TDP1-204ENST00000545686 POLR2MP0CAP2 368 aa9.35□□□□□ -0.91
TDP1-204ENST00000545686 BRAFP15056 766 aa9.35□□□□□ -0.91
TDP1-204ENST00000545686 IVDP26440 423 aa9.35□□□□□ -0.91
TDP1-204ENST00000545686 KCNJ1P48048 391 aa9.35□□□□□ -0.91
TDP1-204ENST00000545686 GCLMP48507 274 aa9.35□□□□□ -0.91
TDP1-204ENST00000545686 LRRC14Q15048 493 aa9.35□□□□□ -0.91
TDP1-204ENST00000545686 SHROOM1Q2M3G4 852 aaPredicted RBP9.35□□□□□ -0.91
TDP1-204ENST00000545686 SLC17A8Q8NDX2 589 aa9.35□□□□□ -0.91
TDP1-204ENST00000545686 KIFAP3Q92845 792 aa9.35□□□□□ -0.91
TDP1-204ENST00000545686 TGS1Q96RS0 853 aaKnown RBP9.35□□□□□ -0.91
TDP1-204ENST00000545686 ZNF577Q9BSK1 485 aa9.35□□□□□ -0.91
TDP1-204ENST00000545686 TIPINQ9BVW5 301 aa9.35□□□□□ -0.91
TDP1-204ENST00000545686 AVENQ9NQS1 362 aaPredicted RBP9.35□□□□□ -0.91
TDP1-204ENST00000545686 NKIRAS1Q9NYS0 192 aa9.35□□□□□ -0.91
TDP1-204ENST00000545686 HSPBP1Q9NZL4 362 aa9.35□□□□□ -0.91
TDP1-204ENST00000545686 KLHL14Q9P2G3 628 aa9.35□□□□□ -0.91
TDP1-204ENST00000545686 WRAP73Q9P2S5 460 aaPredicted RBP9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms