RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 CASKIN2Q8WXE0 1202 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 PSPC1Q8WXF1 523 aaKnown RBP10.62□□□□□ -0.71
SS18-205ENST00000542420 BSNDQ8WZ55 320 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 KREMEN1Q96MU8 473 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 PLVAPQ9BX97 442 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 POLR3FQ9H1D9 316 aaPredicted RBP10.62□□□□□ -0.71
SS18-205ENST00000542420 FAM204AQ9H8W3 233 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 NRBP2Q9NSY0 501 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 GGA3Q9NZ52 723 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 EHD2Q9NZN4 543 aa10.62□□□□□ -0.71
SS18-205ENST00000542420 SEPT9Q9UHD8 586 aaPredicted RBP10.62□□□□□ -0.71
SS18-205ENST00000542420 CXCL11O14625 94 aa10.61□□□□□ -0.71
SS18-205ENST00000542420 SART1O43290 800 aaKnown RBP10.61□□□□□ -0.71
SS18-205ENST00000542420 USP2O75604 605 aaPredicted RBP10.61□□□□□ -0.71
SS18-205ENST00000542420 FTLP02792 175 aaPredicted RBP10.61□□□□□ -0.71
SS18-205ENST00000542420 CHRNB2P17787 502 aa10.61□□□□□ -0.71
SS18-205ENST00000542420 PRPF4BQ13523 1007 aaKnown RBP10.61□□□□□ -0.71
SS18-205ENST00000542420 DGKZQ13574 1117 aa10.61□□□□□ -0.71
SS18-205ENST00000542420 ZPBP2Q6X784 338 aa10.61□□□□□ -0.71
SS18-205ENST00000542420 RDH13Q8NBN7 331 aa10.61□□□□□ -0.71
SS18-205ENST00000542420 TRPM4Q8TD43 1214 aa10.61□□□□□ -0.71
SS18-205ENST00000542420 MAIP1Q8WWC4 291 aa10.61□□□□□ -0.71
SS18-205ENST00000542420 CEP89Q96ST8 783 aa10.61□□□□□ -0.71
SS18-205ENST00000542420 THAP2Q9H0W7 228 aa10.61□□□□□ -0.71
SS18-205ENST00000542420 RASAL2Q9UJF2 1139 aa10.61□□□□□ -0.71
SS18-205ENST00000542420 PACSIN2Q9UNF0 486 aaPredicted RBP10.61□□□□□ -0.71
SS18-205ENST00000542420 SNCAIPQ9Y6H5 919 aa10.61□□□□□ -0.71
SS18-205ENST00000542420 GOLGA6CA6NDK9 693 aa10.61□□□□□ -0.71
SS18-205ENST00000542420 HNRNPDLO14979 420 aaKnown RBP10.61□□□□□ -0.71
SS18-205ENST00000542420 ZMYND10O75800 440 aa10.61□□□□□ -0.71
SS18-205ENST00000542420 GOLGA6DP0CG33 693 aa10.61□□□□□ -0.71
SS18-205ENST00000542420 CYP11B1P15538 503 aa10.61□□□□□ -0.71
SS18-205ENST00000542420 TBXAS1P24557 533 aaPredicted RBP10.61□□□□□ -0.71
SS18-205ENST00000542420 CHRNA3P32297 505 aa10.61□□□□□ -0.71
SS18-205ENST00000542420 CARSP49589 748 aaKnown RBP10.61□□□□□ -0.71
SS18-205ENST00000542420 POLGP54098 1239 aaPredicted RBP10.61□□□□□ -0.71
SS18-205ENST00000542420 SLC7A5Q01650 507 aa10.61□□□□□ -0.71
SS18-205ENST00000542420 FMO1Q01740 532 aa10.61□□□□□ -0.71
SS18-205ENST00000542420 SURF1Q15526 300 aa10.61□□□□□ -0.71
SS18-205ENST00000542420 TARBP2Q15633 366 aaKnown RBP10.61□□□□□ -0.71
SS18-205ENST00000542420 CYP1B1Q16678 543 aa10.61□□□□□ -0.71
SS18-205ENST00000542420 ZACNQ401N2 412 aa10.61□□□□□ -0.71
SS18-205ENST00000542420 ACAD10Q6JQN1 1059 aa10.61□□□□□ -0.71
SS18-205ENST00000542420 CROCCP2Q86T23 111 aa10.61□□□□□ -0.71
SS18-205ENST00000542420 CD101Q93033 1021 aa10.61□□□□□ -0.71
SS18-205ENST00000542420 FAXDC2Q96IV6 333 aa10.61□□□□□ -0.71
SS18-205ENST00000542420 VCPIP1Q96JH7 1222 aa10.61□□□□□ -0.71
SS18-205ENST00000542420 ZSWIM1Q9BR11 485 aa10.61□□□□□ -0.71
SS18-205ENST00000542420 JPH2Q9BR39 696 aaPredicted RBP10.61□□□□□ -0.71
SS18-205ENST00000542420 GOLGA6AQ9NYA3 693 aa10.61□□□□□ -0.71
SS18-205ENST00000542420 SMARCAL1Q9NZC9 954 aa10.61□□□□□ -0.71
SS18-205ENST00000542420 PARP2Q9UGN5 583 aa10.61□□□□□ -0.71
SS18-205ENST00000542420 CNTN6Q9UQ52 1028 aa10.61□□□□□ -0.71
SS18-205ENST00000542420 UTP11Q9Y3A2 253 aaKnown RBP10.61□□□□□ -0.71
SS18-205ENST00000542420 LRRN2O75325 713 aa10.6□□□□□ -0.71
SS18-205ENST00000542420 SLC1A1P43005 524 aa10.6□□□□□ -0.71
SS18-205ENST00000542420 LMAN1P49257 510 aa10.6□□□□□ -0.71
SS18-205ENST00000542420 LIG4P49917 911 aa10.6□□□□□ -0.71
SS18-205ENST00000542420 EFNA5P52803 228 aa10.6□□□□□ -0.71
SS18-205ENST00000542420 SV2AQ7L0J3 742 aa10.6□□□□□ -0.71
SS18-205ENST00000542420 TAS1R3Q7RTX0 852 aa10.6□□□□□ -0.71
SS18-205ENST00000542420 NOP9Q86U38 636 aaKnown RBP10.6□□□□□ -0.71
SS18-205ENST00000542420 GPIHBP1Q8IV16 184 aa10.6□□□□□ -0.71
SS18-205ENST00000542420 GTF3C2Q8WUA4 911 aaPredicted RBP10.6□□□□□ -0.71
SS18-205ENST00000542420 DDX1Q92499 740 aaKnown RBP10.6□□□□□ -0.71
SS18-205ENST00000542420 ARHGEF26Q96DR7 871 aa10.6□□□□□ -0.71
SS18-205ENST00000542420 RNPC3Q96LT9 517 aaKnown RBP10.6□□□□□ -0.71
SS18-205ENST00000542420 OSGEPQ9NPF4 335 aa10.6□□□□□ -0.71
SS18-205ENST00000542420 ADARB2Q9NS39 739 aaKnown RBP10.6□□□□□ -0.71
SS18-205ENST00000542420 C1orf112Q9NSG2 853 aa10.6□□□□□ -0.71
SS18-205ENST00000542420 CTTNBP2NLQ9P2B4 639 aa10.6□□□□□ -0.71
SS18-205ENST00000542420 NFU1Q9UMS0 254 aa10.6□□□□□ -0.71
SS18-205ENST00000542420 ALG6Q9Y672 507 aa10.6□□□□□ -0.71
SS18-205ENST00000542420 ADGRA3Q8IWK6 1321 aa10.6□□□□□ -0.71
SS18-205ENST00000542420 A0A0G2JLL6 359 aaPredicted RBP10.59□□□□□ -0.71
SS18-205ENST00000542420 HMGB1P1B2RPK0 211 aaPredicted RBP10.59□□□□□ -0.71
SS18-205ENST00000542420 TISP43B9A030 160 aa10.59□□□□□ -0.71
SS18-205ENST00000542420 PODXLO00592 558 aa10.59□□□□□ -0.71
SS18-205ENST00000542420 PHF2O75151 1096 aa10.59□□□□□ -0.71
SS18-205ENST00000542420 CTNNA1P35221 906 aaKnown RBP10.59□□□□□ -0.71
SS18-205ENST00000542420 SLC26A2P50443 739 aa10.59□□□□□ -0.71
SS18-205ENST00000542420 ERVK-9P63128 1117 aa10.59□□□□□ -0.71
SS18-205ENST00000542420 MAP2K1Q02750 393 aaPredicted RBP10.59□□□□□ -0.71
SS18-205ENST00000542420 PTP4A2Q12974 167 aa10.59□□□□□ -0.71
SS18-205ENST00000542420 ZSCAN26Q16670 478 aa10.59□□□□□ -0.71
SS18-205ENST00000542420 WDR44Q5JSH3 913 aa10.59□□□□□ -0.71
SS18-205ENST00000542420 SEL1L2Q5TEA6 688 aa10.59□□□□□ -0.71
SS18-205ENST00000542420 PRRT2Q7Z6L0 340 aaPredicted RBP10.59□□□□□ -0.71
SS18-205ENST00000542420 GSPT2Q8IYD1 628 aaKnown RBP10.59□□□□□ -0.71
SS18-205ENST00000542420 PPM1KQ8N3J5 372 aa10.59□□□□□ -0.71
SS18-205ENST00000542420 C12orf50Q8NA57 414 aaPredicted RBP10.59□□□□□ -0.71
SS18-205ENST00000542420 SLC20A1Q8WUM9 679 aa10.59□□□□□ -0.71
SS18-205ENST00000542420 TCP11Q8WWU5 503 aa10.59□□□□□ -0.71
SS18-205ENST00000542420 SLC7A3Q8WY07 619 aa10.59□□□□□ -0.71
SS18-205ENST00000542420 SEMA4DQ92854 862 aa10.59□□□□□ -0.71
SS18-205ENST00000542420 BCCIPQ9P287 314 aaKnown RBP eCLIP10.59□□□□□ -0.71
SS18-205ENST00000542420 PCYOX1Q9UHG3 505 aa10.59□□□□□ -0.71
SS18-205ENST00000542420 PCDHB2Q9Y5E7 798 aa10.59□□□□□ -0.71
SS18-205ENST00000542420 CSADQ9Y600 493 aa10.59□□□□□ -0.71
SS18-205ENST00000542420 ANK1P16157 1881 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms