RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-219	ENST00000541341	IL17A	Q16552	155 aa		11.21	□□□□□ -0.61
CHFR-219	ENST00000541341	EARS2	Q5JPH6	523 aa	Known RBP	11.21	□□□□□ -0.61
CHFR-219	ENST00000541341	TMEM240	Q5SV17	173 aa		11.21	□□□□□ -0.61
CHFR-219	ENST00000541341	SYDE2	Q5VT97	1194 aa		11.21	□□□□□ -0.61
CHFR-219	ENST00000541341	CXCL17	Q6UXB2	119 aa		11.21	□□□□□ -0.61
CHFR-219	ENST00000541341	MAMDC4	Q6UXC1	1216 aa		11.21	□□□□□ -0.61
CHFR-219	ENST00000541341	ZNF365	Q70YC5	407 aa		11.21	□□□□□ -0.61
CHFR-219	ENST00000541341	ADGRF4	Q8IZF3	695 aa		11.21	□□□□□ -0.61
CHFR-219	ENST00000541341	FUK	Q8N0W3	1084 aa		11.21	□□□□□ -0.61
CHFR-219	ENST00000541341	TSEN2	Q8NCE0	465 aa	Known RBP	11.21	□□□□□ -0.61
CHFR-219	ENST00000541341	BANK1	Q8NDB2	785 aa		11.21	□□□□□ -0.61
CHFR-219	ENST00000541341	SEC14L1	Q92503	715 aa		11.21	□□□□□ -0.61
CHFR-219	ENST00000541341	BAP1	Q92560	729 aa		11.21	□□□□□ -0.61
CHFR-219	ENST00000541341	SEC16B	Q96JE7	1060 aa		11.21	□□□□□ -0.61
CHFR-219	ENST00000541341	ZFP91	Q96JP5	570 aa	Predicted RBP	11.21	□□□□□ -0.61
CHFR-219	ENST00000541341	INPP4A	Q96PE3	977 aa	Predicted RBP	11.21	□□□□□ -0.61
CHFR-219	ENST00000541341	KRT12	Q99456	494 aa		11.21	□□□□□ -0.61
CHFR-219	ENST00000541341	TMEM109	Q9BVC6	243 aa		11.21	□□□□□ -0.61
CHFR-219	ENST00000541341	PBX4	Q9BYU1	374 aa		11.21	□□□□□ -0.61
CHFR-219	ENST00000541341	ROPN1B	Q9BZX4	212 aa	Predicted RBP	11.21	□□□□□ -0.61
CHFR-219	ENST00000541341	ABHD16B	Q9H3Z7	469 aa		11.21	□□□□□ -0.61
CHFR-219	ENST00000541341	JMJD4	Q9H9V9	463 aa		11.21	□□□□□ -0.61
CHFR-219	ENST00000541341	ROPN1	Q9HAT0	212 aa	Predicted RBP	11.21	□□□□□ -0.61
CHFR-219	ENST00000541341	GPCPD1	Q9NPB8	672 aa		11.21	□□□□□ -0.61
CHFR-219	ENST00000541341	PDGFC	Q9NRA1	345 aa		11.21	□□□□□ -0.61
CHFR-219	ENST00000541341	RNF146	Q9NTX7	359 aa		11.21	□□□□□ -0.61
CHFR-219	ENST00000541341	ZNF536	O15090	1300 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	KIAA1217	Q5T5P2	1943 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	GTPBP10	A4D1E9	387 aa	Known RBP	11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	SOWAHB	A6NEL2	793 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	FAM205C	A6NFA0	338 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	BHMG1	C9JSJ3	638 aa	Predicted RBP	11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	ARVCF	O00192	962 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	ZNF263	O14978	683 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	MGRN1	O60291	552 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	PALM	O75781	387 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	KIF4A	O95239	1232 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	AGT	P01019	485 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	KRT14	P02533	472 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	GLI1	P08151	1106 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	NUDT17	P0C025	328 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	RFX1	P22670	979 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	IGFBP4	P22692	258 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	GBP2	P32456	591 aa	Predicted RBP	11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	SLC16A2	P36021	539 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	HSD17B3	P37058	310 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	PRKCI	P41743	596 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	CARS	P49589	748 aa	Known RBP	11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	ATP1A2	P50993	1020 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	PMS1	P54277	932 aa	Known RBP	11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	OAZ1	P54368	228 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	CCL23	P55773	120 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	SLC7A5	Q01650	507 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	GUCY1A3	Q02108	690 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	TNFAIP2	Q03169	654 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	ANKRD20A8P	Q5CZ79	823 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	MFSD5	Q6N075	450 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	FRMD5	Q7Z6J6	570 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	FBXO16	Q8IX29	292 aa	Predicted RBP	11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	CMTR1	Q8N1G2	835 aa	Known RBP	11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	RASGEF1C	Q8N431	466 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	MAB21L3	Q8N8X9	362 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	TATDN2	Q93075	761 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	MIEF2	Q96C03	454 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	GDAP1L1	Q96MZ0	367 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	TOX2	Q96NM4	488 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	PLVAP	Q9BX97	442 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	UBA5	Q9GZZ9	404 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	PLEKHA4	Q9H4M7	779 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	MLXIP	Q9HAP2	919 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	SPC25	Q9HBM1	224 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	FAM207A	Q9NSI2	230 aa	Predicted RBP	11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	CXXC1	Q9P0U4	656 aa	Predicted RBP	11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	RAPGEFL1	Q9UHV5	662 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	SLC12A6	Q9UHW9	1150 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	PNMA2	Q9UL42	364 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	TANC1	Q9C0D5	1861 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	CHD7	Q9P2D1	2997 aa		11.2	□□□□□ -0.62
CHFR-219	ENST00000541341	CCT8L1P	A6NM43	557 aa		11.19	□□□□□ -0.62
CHFR-219	ENST00000541341		E7ENQ6	273 aa		11.19	□□□□□ -0.62
CHFR-219	ENST00000541341		O00370	1275 aa		11.19	□□□□□ -0.62
CHFR-219	ENST00000541341	ABLIM1	O14639	778 aa		11.19	□□□□□ -0.62
CHFR-219	ENST00000541341	NDC80	O14777	642 aa		11.19	□□□□□ -0.62
CHFR-219	ENST00000541341	ZBTB5	O15062	677 aa		11.19	□□□□□ -0.62
CHFR-219	ENST00000541341	DYNC1LI2	O43237	492 aa	Predicted RBP	11.19	□□□□□ -0.62
CHFR-219	ENST00000541341	CCNT1	O60563	726 aa	Known RBP	11.19	□□□□□ -0.62
CHFR-219	ENST00000541341	BUB1B	O60566	1050 aa	Predicted RBP	11.19	□□□□□ -0.62
CHFR-219	ENST00000541341	MYOG	P15173	224 aa		11.19	□□□□□ -0.62
CHFR-219	ENST00000541341	FER	P16591	822 aa		11.19	□□□□□ -0.62
CHFR-219	ENST00000541341	CDK7	P50613	346 aa		11.19	□□□□□ -0.62
CHFR-219	ENST00000541341	PDE6C	P51160	858 aa		11.19	□□□□□ -0.62
CHFR-219	ENST00000541341	RABGGTB	P53611	331 aa		11.19	□□□□□ -0.62
CHFR-219	ENST00000541341	NAPA	P54920	295 aa		11.19	□□□□□ -0.62
CHFR-219	ENST00000541341	GJA9	P57773	515 aa		11.19	□□□□□ -0.62
CHFR-219	ENST00000541341	SATB1	Q01826	763 aa		11.19	□□□□□ -0.62
CHFR-219	ENST00000541341	STK4	Q13043	487 aa		11.19	□□□□□ -0.62
CHFR-219	ENST00000541341	PPIG	Q13427	754 aa	Known RBP eCLIP	11.19	□□□□□ -0.62	4e-6	■■■■□ 20.9
CHFR-219	ENST00000541341	CALCRL	Q16602	461 aa		11.19	□□□□□ -0.62
CHFR-219	ENST00000541341	SKIDA1	Q1XH10	827 aa		11.19	□□□□□ -0.62
CHFR-219	ENST00000541341	NSMF	Q6X4W1	530 aa		11.19	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms