RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 NOL4O94818 638 aa19.24■□□□□ 0.67
CLIP1-215ENST00000541108 SLC9A1P19634 815 aa19.24■□□□□ 0.67
CLIP1-215ENST00000541108 MRPS6P82932 125 aaKnown RBP19.24■□□□□ 0.67
CLIP1-215ENST00000541108 MYL7Q01449 175 aa19.24■□□□□ 0.67
CLIP1-215ENST00000541108 TSR1Q2NL82 804 aaKnown RBP19.24■□□□□ 0.67
CLIP1-215ENST00000541108 EEF1DP3Q658K8 133 aa19.24■□□□□ 0.67
CLIP1-215ENST00000541108 CATSPER4Q7RTX7 472 aa19.24■□□□□ 0.67
CLIP1-215ENST00000541108 BRSK2Q8IWQ3 736 aa19.24■□□□□ 0.67
CLIP1-215ENST00000541108 SLC43A3Q8NBI5 491 aa19.24■□□□□ 0.67
CLIP1-215ENST00000541108 BAG1Q99933 345 aaPredicted RBP19.24■□□□□ 0.67
CLIP1-215ENST00000541108 ADPGKQ9BRR6 497 aa19.24■□□□□ 0.67
CLIP1-215ENST00000541108 NUCKS1Q9H1E3 243 aaKnown RBP19.24■□□□□ 0.67
CLIP1-215ENST00000541108 CDT1Q9H211 546 aa19.24■□□□□ 0.67
CLIP1-215ENST00000541108 PDZD7Q9H5P4 517 aa19.24■□□□□ 0.67
CLIP1-215ENST00000541108 COQ4Q9Y3A0 265 aa19.24■□□□□ 0.67
CLIP1-215ENST00000541108 CEP350Q5VT06 3117 aa19.24■□□□□ 0.67
CLIP1-215ENST00000541108 A0A1W2PQ45 241 aaPredicted RBP19.24■□□□□ 0.67
CLIP1-215ENST00000541108 A0A1W2PQY0 241 aa19.24■□□□□ 0.67
CLIP1-215ENST00000541108 FECHP22830 423 aa19.24■□□□□ 0.67
CLIP1-215ENST00000541108 GCLMP48507 274 aa19.24■□□□□ 0.67
CLIP1-215ENST00000541108 MXI1P50539 228 aa19.24■□□□□ 0.67
CLIP1-215ENST00000541108 PTK7Q13308 1070 aa19.24■□□□□ 0.67
CLIP1-215ENST00000541108 DPY19L2P1Q6NXN4 242 aa19.24■□□□□ 0.67
CLIP1-215ENST00000541108 TRIM65Q6PJ69 517 aa19.24■□□□□ 0.67
CLIP1-215ENST00000541108 LSM14BQ9BX40 385 aaKnown RBP19.24■□□□□ 0.67
CLIP1-215ENST00000541108 TMEM117Q9H0C3 514 aa19.24■□□□□ 0.67
CLIP1-215ENST00000541108 STARD7Q9NQZ5 370 aa19.24■□□□□ 0.67
CLIP1-215ENST00000541108 ESPNB1AK53 854 aa19.23■□□□□ 0.67
CLIP1-215ENST00000541108 EPHB6O15197 1021 aa19.23■□□□□ 0.67
CLIP1-215ENST00000541108 DLATP10515 647 aaKnown RBP19.23■□□□□ 0.67
CLIP1-215ENST00000541108 HARSP12081 509 aaKnown RBP19.23■□□□□ 0.67
CLIP1-215ENST00000541108 MSNP26038 577 aaKnown RBP19.23■□□□□ 0.67
CLIP1-215ENST00000541108 HOXA11P31270 313 aaPredicted RBP19.23■□□□□ 0.67
CLIP1-215ENST00000541108 KCNJ6P48051 423 aa19.23■□□□□ 0.67
CLIP1-215ENST00000541108 AP3M2P53677 418 aa19.23■□□□□ 0.67
CLIP1-215ENST00000541108 GOLGA8FQ08AF8 430 aa19.23■□□□□ 0.67
CLIP1-215ENST00000541108 GOLGA8DPQ0D2H9 430 aa19.23■□□□□ 0.67
CLIP1-215ENST00000541108 KLHDC7AQ5VTJ3 777 aa19.23■□□□□ 0.67
CLIP1-215ENST00000541108 CACNA2D4Q7Z3S7 1137 aa19.23■□□□□ 0.67
CLIP1-215ENST00000541108 CTU1Q7Z7A3 348 aaKnown RBP19.23■□□□□ 0.67
CLIP1-215ENST00000541108 TMEM139Q8IV31 216 aa19.23■□□□□ 0.67
CLIP1-215ENST00000541108 EHBP1Q8NDI1 1231 aa19.23■□□□□ 0.67
CLIP1-215ENST00000541108 OGDHLQ9ULD0 1010 aa19.23■□□□□ 0.67
CLIP1-215ENST00000541108 TRPV2Q9Y5S1 764 aa19.23■□□□□ 0.67
CLIP1-215ENST00000541108 A0A0U1RQG5 324 aaPredicted RBP19.22■□□□□ 0.67
CLIP1-215ENST00000541108 ARHGAP6O43182 974 aa19.22■□□□□ 0.67
CLIP1-215ENST00000541108 UCHL3P15374 230 aa19.22■□□□□ 0.67
CLIP1-215ENST00000541108 TNNI1P19237 187 aa19.22■□□□□ 0.67
CLIP1-215ENST00000541108 HNRNPH3P31942 346 aaKnown RBP19.22■□□□□ 0.67
CLIP1-215ENST00000541108 DCAF4L1Q3SXM0 396 aa19.22■□□□□ 0.67
CLIP1-215ENST00000541108 EPC2Q52LR7 807 aa19.22■□□□□ 0.67
CLIP1-215ENST00000541108 ZBTB41Q5SVQ8 909 aa19.22■□□□□ 0.67
CLIP1-215ENST00000541108 NOTUMQ6P988 496 aa19.22■□□□□ 0.67
CLIP1-215ENST00000541108 C15orf39Q6ZRI6 1047 aa19.22■□□□□ 0.67
CLIP1-215ENST00000541108 SV2AQ7L0J3 742 aa19.22■□□□□ 0.67
CLIP1-215ENST00000541108 LMO3Q8TAP4 145 aa19.22■□□□□ 0.67
CLIP1-215ENST00000541108 TMEM40Q8WWA1 233 aa19.22■□□□□ 0.67
CLIP1-215ENST00000541108 CPB2Q96IY4 423 aa19.22■□□□□ 0.67
CLIP1-215ENST00000541108 POP1Q99575 1024 aaKnown RBP19.22■□□□□ 0.67
CLIP1-215ENST00000541108 RNF208Q9H0X6 261 aa19.22■□□□□ 0.67
CLIP1-215ENST00000541108 GANQ9H2C0 597 aa19.22■□□□□ 0.67
CLIP1-215ENST00000541108 PDE11AQ9HCR9 933 aa19.22■□□□□ 0.67
CLIP1-215ENST00000541108 PLAGL2Q9UPG8 496 aa19.22■□□□□ 0.67
CLIP1-215ENST00000541108 CAND2O75155 1236 aa19.21■□□□□ 0.67
CLIP1-215ENST00000541108 CLTAP09496 248 aa19.21■□□□□ 0.67
CLIP1-215ENST00000541108 CCL5P13501 91 aa19.21■□□□□ 0.67
CLIP1-215ENST00000541108 RFX1P22670 979 aa19.21■□□□□ 0.67
CLIP1-215ENST00000541108 TNFSF9P41273 254 aa19.21■□□□□ 0.67
CLIP1-215ENST00000541108 MTFR1Q15390 333 aa19.21■□□□□ 0.67
CLIP1-215ENST00000541108 PKN2Q16513 984 aaKnown RBP19.21■□□□□ 0.67
CLIP1-215ENST00000541108 SLC27A1Q6PCB7 646 aa19.21■□□□□ 0.67
CLIP1-215ENST00000541108 FBXO46Q6PJ61 603 aaPredicted RBP19.21■□□□□ 0.67
CLIP1-215ENST00000541108 CDR2LQ86X02 465 aaPredicted RBP19.21■□□□□ 0.67
CLIP1-215ENST00000541108 THNSL1Q8IYQ7 743 aa19.21■□□□□ 0.67
CLIP1-215ENST00000541108 KIAA1524Q8TCG1 905 aa19.21■□□□□ 0.67
CLIP1-215ENST00000541108 BAP1Q92560 729 aa19.21■□□□□ 0.67
CLIP1-215ENST00000541108 SYN2Q92777 582 aaPredicted RBP19.21■□□□□ 0.67
CLIP1-215ENST00000541108 DEFB118Q96PH6 123 aa19.21■□□□□ 0.67
CLIP1-215ENST00000541108 SIX2Q9NPC8 291 aa19.21■□□□□ 0.67
CLIP1-215ENST00000541108 MYO6Q9UM54 1294 aa19.21■□□□□ 0.67
CLIP1-215ENST00000541108 NOD1Q9Y239 953 aa19.21■□□□□ 0.67
CLIP1-215ENST00000541108 CDY2AQ9Y6F7 541 aa19.21■□□□□ 0.67
CLIP1-215ENST00000541108 IL18RAPO95256 599 aa19.2■□□□□ 0.66
CLIP1-215ENST00000541108 POLR2FP61218 127 aaKnown RBP19.2■□□□□ 0.66
CLIP1-215ENST00000541108 ZACNQ401N2 412 aa19.2■□□□□ 0.66
CLIP1-215ENST00000541108 SEZ6Q53EL9 994 aa19.2■□□□□ 0.66
CLIP1-215ENST00000541108 TMTC1Q8IUR5 882 aa19.2■□□□□ 0.66
CLIP1-215ENST00000541108 WDR49Q8IV35 697 aa19.2■□□□□ 0.66
CLIP1-215ENST00000541108 FBXL13Q8NEE6 735 aa19.2■□□□□ 0.66
CLIP1-215ENST00000541108 CGRRF1Q99675 332 aa19.2■□□□□ 0.66
CLIP1-215ENST00000541108 SENP6Q9GZR1 1112 aaPredicted RBP19.2■□□□□ 0.66
CLIP1-215ENST00000541108 RPF1Q9H9Y2 349 aaKnown RBP19.2■□□□□ 0.66
CLIP1-215ENST00000541108 ZNHIT6Q9NWK9 470 aaKnown RBP19.2■□□□□ 0.66
CLIP1-215ENST00000541108 ARVCFO00192 962 aa19.2■□□□□ 0.66
CLIP1-215ENST00000541108 B4GALT4O60513 344 aa19.2■□□□□ 0.66
CLIP1-215ENST00000541108 C4BPAP04003 597 aaKnown RBP19.2■□□□□ 0.66
CLIP1-215ENST00000541108 STAG3L1P0CL83 205 aa19.2■□□□□ 0.66
CLIP1-215ENST00000541108 HSPA8P11142 646 aaKnown RBP19.2■□□□□ 0.66
CLIP1-215ENST00000541108 FGFR4P22455 802 aa19.2■□□□□ 0.66
CLIP1-215ENST00000541108 CDK17Q00537 523 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms