RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 TCP11X2Q5H9J9 407 aa20.61■□□□□ 0.89
TNFRSF1A-213ENST00000540022 TWF2Q6IBS0 349 aaKnown RBP20.61■□□□□ 0.89
TNFRSF1A-213ENST00000540022 DEFB128Q7Z7B8 93 aa20.61■□□□□ 0.89
TNFRSF1A-213ENST00000540022 CREBRFQ8IUR6 639 aa20.61■□□□□ 0.89
TNFRSF1A-213ENST00000540022 FAM114A1Q8IWE2 563 aa20.61■□□□□ 0.89
TNFRSF1A-213ENST00000540022 FAM186BQ8IYM0 893 aa20.61■□□□□ 0.89
TNFRSF1A-213ENST00000540022 DBF4BQ8NFT6 615 aa20.61■□□□□ 0.89
TNFRSF1A-213ENST00000540022 BORCS6Q96GS4 357 aa20.61■□□□□ 0.89
TNFRSF1A-213ENST00000540022 GNA14O95837 355 aa20.6■□□□□ 0.89
TNFRSF1A-213ENST00000540022 CXCL10P02778 98 aa20.6■□□□□ 0.89
TNFRSF1A-213ENST00000540022 EPB41P11171 864 aaKnown RBP20.6■□□□□ 0.89
TNFRSF1A-213ENST00000540022 ZSCAN20P17040 1043 aaPredicted RBP20.6■□□□□ 0.89
TNFRSF1A-213ENST00000540022 CDK11BP21127 795 aaKnown RBP20.6■□□□□ 0.89
TNFRSF1A-213ENST00000540022 MARSP56192 900 aaKnown RBP20.6■□□□□ 0.89
TNFRSF1A-213ENST00000540022 OSTNP61366 133 aa20.6■□□□□ 0.89
TNFRSF1A-213ENST00000540022 SNRNP35Q16560 246 aaKnown RBP20.6■□□□□ 0.89
TNFRSF1A-213ENST00000540022 DCAF4L1Q3SXM0 396 aa20.6■□□□□ 0.89
TNFRSF1A-213ENST00000540022 CCDC40Q4G0X9 1142 aa20.6■□□□□ 0.89
TNFRSF1A-213ENST00000540022 C9orf50Q5SZB4 431 aa20.6■□□□□ 0.89
TNFRSF1A-213ENST00000540022 TMEM192Q8IY95 271 aa20.6■□□□□ 0.89
TNFRSF1A-213ENST00000540022 KIAA1586Q9HCI6 787 aa20.6■□□□□ 0.89
TNFRSF1A-213ENST00000540022 MAGEC2Q9UBF1 373 aaPredicted RBP20.6■□□□□ 0.89
TNFRSF1A-213ENST00000540022 CPSF3Q9UKF6 684 aaKnown RBP20.6■□□□□ 0.89
TNFRSF1A-213ENST00000540022 MAPK13O15264 365 aa20.59■□□□□ 0.89
TNFRSF1A-213ENST00000540022 ACRP10323 421 aa20.59■□□□□ 0.89
TNFRSF1A-213ENST00000540022 SHHQ15465 462 aa20.59■□□□□ 0.89
TNFRSF1A-213ENST00000540022 UVSSAQ2YD98 709 aa20.59■□□□□ 0.89
TNFRSF1A-213ENST00000540022 C16orf59Q7L2K0 433 aa20.59■□□□□ 0.89
TNFRSF1A-213ENST00000540022 FRMD5Q7Z6J6 570 aa20.59■□□□□ 0.89
TNFRSF1A-213ENST00000540022 ADAM2Q99965 735 aa20.59■□□□□ 0.89
TNFRSF1A-213ENST00000540022 ZNF233A6NK53 670 aa20.58■□□□□ 0.89
TNFRSF1A-213ENST00000540022 STAG3L1P0CL83 205 aa20.58■□□□□ 0.89
TNFRSF1A-213ENST00000540022 EEF1GP26641 437 aaKnown RBP20.58■□□□□ 0.89
TNFRSF1A-213ENST00000540022 SPAG1Q07617 926 aa20.58■□□□□ 0.89
TNFRSF1A-213ENST00000540022 KRT31Q15323 416 aa20.58■□□□□ 0.89
TNFRSF1A-213ENST00000540022 APBB1IPQ7Z5R6 666 aaPredicted RBP20.58■□□□□ 0.89
TNFRSF1A-213ENST00000540022 RTN4RL1Q86UN2 441 aaPredicted RBP20.58■□□□□ 0.89
TNFRSF1A-213ENST00000540022 LINC01599Q8WXQ3 324 aa20.58■□□□□ 0.89
TNFRSF1A-213ENST00000540022 SEPT8Q92599 483 aa20.58■□□□□ 0.89
TNFRSF1A-213ENST00000540022 TRIM6Q9C030 488 aaPredicted RBP20.58■□□□□ 0.89
TNFRSF1A-213ENST00000540022 NXF3Q9H4D5 531 aaKnown RBP20.58■□□□□ 0.89
TNFRSF1A-213ENST00000540022 GRPEL1Q9HAV7 217 aa20.58■□□□□ 0.89
TNFRSF1A-213ENST00000540022 FAM105AQ9NUU6 356 aa20.58■□□□□ 0.89
TNFRSF1A-213ENST00000540022 ARMCX3Q9UH62 379 aaPredicted RBP20.58■□□□□ 0.89
TNFRSF1A-213ENST00000540022 HES2Q9Y543 173 aa20.58■□□□□ 0.89
TNFRSF1A-213ENST00000540022 GRM5P41594 1212 aa20.58■□□□□ 0.88
TNFRSF1A-213ENST00000540022 WNT7BP56706 349 aa20.58■□□□□ 0.88
TNFRSF1A-213ENST00000540022 APTXQ7Z2E3 356 aaKnown RBP20.58■□□□□ 0.88
TNFRSF1A-213ENST00000540022 TRIM59Q8IWR1 403 aa20.58■□□□□ 0.88
TNFRSF1A-213ENST00000540022 TMEM199Q8N511 208 aa20.58■□□□□ 0.88
TNFRSF1A-213ENST00000540022 SMG8Q8ND04 991 aaKnown RBP20.58■□□□□ 0.88
TNFRSF1A-213ENST00000540022 PLEKHO2Q8TD55 490 aa20.58■□□□□ 0.88
TNFRSF1A-213ENST00000540022 MFSD14AQ96MC6 490 aa20.58■□□□□ 0.88
TNFRSF1A-213ENST00000540022 TRAIPQ9BWF2 469 aa20.58■□□□□ 0.88
TNFRSF1A-213ENST00000540022 METTL14Q9HCE5 456 aaKnown RBP20.58■□□□□ 0.88
TNFRSF1A-213ENST00000540022 LIMA1Q9UHB6 759 aaKnown RBP20.58■□□□□ 0.88
TNFRSF1A-213ENST00000540022 IPPQ9Y573 584 aa20.58■□□□□ 0.88
TNFRSF1A-213ENST00000540022 SCN5AQ14524 2016 aa20.57■□□□□ 0.88
TNFRSF1A-213ENST00000540022 AP5Z1O43299 807 aa20.57■□□□□ 0.88
TNFRSF1A-213ENST00000540022 CLTAP09496 248 aa20.57■□□□□ 0.88
TNFRSF1A-213ENST00000540022 RFC2P35250 354 aa20.57■□□□□ 0.88
TNFRSF1A-213ENST00000540022 MTIF2P46199 727 aaKnown RBP20.57■□□□□ 0.88
TNFRSF1A-213ENST00000540022 FANCCQ00597 558 aa20.57■□□□□ 0.88
TNFRSF1A-213ENST00000540022 FPGSQ05932 587 aa20.57■□□□□ 0.88
TNFRSF1A-213ENST00000540022 CYP24A1Q07973 514 aa20.57■□□□□ 0.88
TNFRSF1A-213ENST00000540022 ENOX2Q16206 610 aaKnown RBP20.57■□□□□ 0.88
TNFRSF1A-213ENST00000540022 BRSK2Q8IWQ3 736 aa20.57■□□□□ 0.88
TNFRSF1A-213ENST00000540022 TUBGCP2Q9BSJ2 902 aa20.57■□□□□ 0.88
TNFRSF1A-213ENST00000540022 FTHL17Q9BXU8 183 aa20.57■□□□□ 0.88
TNFRSF1A-213ENST00000540022 RNF39Q9H2S5 420 aa20.57■□□□□ 0.88
TNFRSF1A-213ENST00000540022 SNTG2Q9NY99 539 aa20.57■□□□□ 0.88
TNFRSF1A-213ENST00000540022 TAB2Q9NYJ8 693 aa20.57■□□□□ 0.88
TNFRSF1A-213ENST00000540022 RBAKQ9NYW8 714 aaPredicted RBP20.57■□□□□ 0.88
TNFRSF1A-213ENST00000540022 PCDHB2Q9Y5E7 798 aa20.57■□□□□ 0.88
TNFRSF1A-213ENST00000540022 TANC1Q9C0D5 1861 aa20.56■□□□□ 0.88
TNFRSF1A-213ENST00000540022 LRRC10BA6NIK2 292 aa20.56■□□□□ 0.88
TNFRSF1A-213ENST00000540022 MEFVO15553 781 aaPredicted RBP20.56■□□□□ 0.88
TNFRSF1A-213ENST00000540022 BFSP1Q12934 665 aa20.56■□□□□ 0.88
TNFRSF1A-213ENST00000540022 KYAT1Q16773 422 aa20.56■□□□□ 0.88
TNFRSF1A-213ENST00000540022 INTS8Q75QN2 995 aaKnown RBP20.56■□□□□ 0.88
TNFRSF1A-213ENST00000540022 APBB2Q92870 758 aa20.56■□□□□ 0.88
TNFRSF1A-213ENST00000540022 CCDC94Q9BW85 323 aaPredicted RBP20.56■□□□□ 0.88
TNFRSF1A-213ENST00000540022 RGS18Q9NS28 235 aa20.56■□□□□ 0.88
TNFRSF1A-213ENST00000540022 COL6A3P12111 3177 aa20.55■□□□□ 0.88
TNFRSF1A-213ENST00000540022 A0A0U1RQF3 1178 aa20.55■□□□□ 0.88
TNFRSF1A-213ENST00000540022 CXCL8P10145 99 aa20.55■□□□□ 0.88
TNFRSF1A-213ENST00000540022 KRT13P13646 458 aa20.55■□□□□ 0.88
TNFRSF1A-213ENST00000540022 VAMP7P51809 220 aa20.55■□□□□ 0.88
TNFRSF1A-213ENST00000540022 COPB1P53618 953 aaKnown RBP20.55■□□□□ 0.88
TNFRSF1A-213ENST00000540022 DLG4P78352 724 aa20.55■□□□□ 0.88
TNFRSF1A-213ENST00000540022 PLCB2Q00722 1185 aa20.55■□□□□ 0.88
TNFRSF1A-213ENST00000540022 HSP90AA2PQ14568 343 aaPredicted RBP20.55■□□□□ 0.88
TNFRSF1A-213ENST00000540022 PSMD6Q15008 389 aa20.55■□□□□ 0.88
TNFRSF1A-213ENST00000540022 GPR153Q6NV75 609 aa20.55■□□□□ 0.88
TNFRSF1A-213ENST00000540022 ANKRD20A12PQ8NF67 263 aa20.55■□□□□ 0.88
TNFRSF1A-213ENST00000540022 PARD3BQ8TEW8 1205 aa20.55■□□□□ 0.88
TNFRSF1A-213ENST00000540022 SLC35C1Q96A29 364 aa20.55■□□□□ 0.88
TNFRSF1A-213ENST00000540022 CCDC127Q96BQ5 260 aa20.55■□□□□ 0.88
TNFRSF1A-213ENST00000540022 ACAP3Q96P50 834 aa20.55■□□□□ 0.88
TNFRSF1A-213ENST00000540022 APOL6Q9BWW8 343 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms