RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 PCDHA10Q9Y5I2 948 aa9.08□□□□□ -0.96
NEDD8-207ENST00000533242 FANCMQ8IYD8 2048 aa9.07□□□□□ -0.96
NEDD8-207ENST00000533242 VWA3AA6NCI4 1184 aa9.07□□□□□ -0.96
NEDD8-207ENST00000533242 NT5C1B-RDH14C9J2C7 533 aa9.07□□□□□ -0.96
NEDD8-207ENST00000533242 STX17P56962 302 aa9.07□□□□□ -0.96
NEDD8-207ENST00000533242 TPM4P67936 248 aa9.07□□□□□ -0.96
NEDD8-207ENST00000533242 KANK3Q6NY19 840 aa9.07□□□□□ -0.96
NEDD8-207ENST00000533242 SYT10Q6XYQ8 523 aa9.07□□□□□ -0.96
NEDD8-207ENST00000533242 PIK3AP1Q6ZUJ8 805 aa9.07□□□□□ -0.96
NEDD8-207ENST00000533242 CCDC149Q6ZUS6 474 aa9.07□□□□□ -0.96
NEDD8-207ENST00000533242 APTXQ7Z2E3 356 aaKnown RBP9.07□□□□□ -0.96
NEDD8-207ENST00000533242 CABP7Q86V35 215 aa9.07□□□□□ -0.96
NEDD8-207ENST00000533242 ELOA2Q8IYF1 753 aaPredicted RBP9.07□□□□□ -0.96
NEDD8-207ENST00000533242 PDCL2Q8N4E4 241 aa9.07□□□□□ -0.96
NEDD8-207ENST00000533242 SMARCE1Q969G3 411 aa9.07□□□□□ -0.96
NEDD8-207ENST00000533242 PAGE5Q96GU1 130 aa9.07□□□□□ -0.96
NEDD8-207ENST00000533242 CCDC94Q9BW85 323 aaPredicted RBP9.07□□□□□ -0.96
NEDD8-207ENST00000533242 CHST12Q9NRB3 414 aa9.07□□□□□ -0.96
NEDD8-207ENST00000533242 NRBP2Q9NSY0 501 aa9.07□□□□□ -0.96
NEDD8-207ENST00000533242 BARHL2Q9NY43 387 aa9.07□□□□□ -0.96
NEDD8-207ENST00000533242 TRIOO75962 3097 aa9.07□□□□□ -0.96
NEDD8-207ENST00000533242 SPDYE4A6NLX3 237 aa9.06□□□□□ -0.96
NEDD8-207ENST00000533242 PI15O43692 258 aa9.06□□□□□ -0.96
NEDD8-207ENST00000533242 SKIP12755 728 aa9.06□□□□□ -0.96
NEDD8-207ENST00000533242 TBX2Q13207 712 aaPredicted RBP9.06□□□□□ -0.96
NEDD8-207ENST00000533242 TTC38Q5R3I4 469 aa9.06□□□□□ -0.96
NEDD8-207ENST00000533242 KLHL10Q6JEL2 608 aa9.06□□□□□ -0.96
NEDD8-207ENST00000533242 LRRC71Q8N4P6 559 aa9.06□□□□□ -0.96
NEDD8-207ENST00000533242 AUTS2Q8WXX7 1259 aa9.06□□□□□ -0.96
NEDD8-207ENST00000533242 IGSF21Q96ID5 467 aa9.06□□□□□ -0.96
NEDD8-207ENST00000533242 TRAIPQ9BWF2 469 aa9.06□□□□□ -0.96
NEDD8-207ENST00000533242 IGSF9Q9P2J2 1179 aa9.06□□□□□ -0.96
NEDD8-207ENST00000533242 STK39Q9UEW8 545 aa9.06□□□□□ -0.96
NEDD8-207ENST00000533242 FBXL21Q9UKT6 434 aa9.06□□□□□ -0.96
NEDD8-207ENST00000533242 WDFY4Q6ZS81 3184 aa9.06□□□□□ -0.96
NEDD8-207ENST00000533242 TEX33O43247 280 aa9.06□□□□□ -0.96
NEDD8-207ENST00000533242 OATP04181 439 aa9.06□□□□□ -0.96
NEDD8-207ENST00000533242 MCM7P33993 719 aa9.06□□□□□ -0.96
NEDD8-207ENST00000533242 ADKP55263 362 aaKnown RBP9.06□□□□□ -0.96
NEDD8-207ENST00000533242 ATP2C1P98194 919 aaPredicted RBP9.06□□□□□ -0.96
NEDD8-207ENST00000533242 CUL4BQ13620 913 aa9.06□□□□□ -0.96
NEDD8-207ENST00000533242 E2F4Q16254 413 aa9.06□□□□□ -0.96
NEDD8-207ENST00000533242 JAKMIP3Q5VZ66 844 aa9.06□□□□□ -0.96
NEDD8-207ENST00000533242 TMC5Q6UXY8 1006 aa9.06□□□□□ -0.96
NEDD8-207ENST00000533242 MTERF4Q7Z6M4 381 aaKnown RBP9.06□□□□□ -0.96
NEDD8-207ENST00000533242 SCLT1Q96NL6 688 aa9.06□□□□□ -0.96
NEDD8-207ENST00000533242 BLZF1Q9H2G9 400 aa9.06□□□□□ -0.96
NEDD8-207ENST00000533242 NRDE2Q9H7Z3 1164 aa9.06□□□□□ -0.96
NEDD8-207ENST00000533242 MTCL1Q9Y4B5 1905 aaKnown RBP9.06□□□□□ -0.96
NEDD8-207ENST00000533242 FAM186AA6NE01 2351 aa9.06□□□□□ -0.96
NEDD8-207ENST00000533242 ESYT2A0FGR8 921 aa9.05□□□□□ -0.96
NEDD8-207ENST00000533242 ZC3H11AO75152 810 aaKnown RBP eCLIP9.05□□□□□ -0.96
NEDD8-207ENST00000533242 GALTP07902 379 aa9.05□□□□□ -0.96
NEDD8-207ENST00000533242 SLFN14P0C7P3 912 aa9.05□□□□□ -0.96
NEDD8-207ENST00000533242 FGFR4P22455 802 aa9.05□□□□□ -0.96
NEDD8-207ENST00000533242 PHKA2P46019 1235 aa9.05□□□□□ -0.96
NEDD8-207ENST00000533242 CBX1P83916 185 aa9.05□□□□□ -0.96
NEDD8-207ENST00000533242 CDC42EP1Q00587 391 aa9.05□□□□□ -0.96
NEDD8-207ENST00000533242 PFKFB3Q16875 520 aaPredicted RBP9.05□□□□□ -0.96
NEDD8-207ENST00000533242 TRIM65Q6PJ69 517 aa9.05□□□□□ -0.96
NEDD8-207ENST00000533242 TMEM173Q86WV6 379 aaPredicted RBP9.05□□□□□ -0.96
NEDD8-207ENST00000533242 REXO1L1PQ8IX06 675 aa9.05□□□□□ -0.96
NEDD8-207ENST00000533242 SIX5Q8N196 739 aa9.05□□□□□ -0.96
NEDD8-207ENST00000533242 TC2NQ8N9U0 490 aa9.05□□□□□ -0.96
NEDD8-207ENST00000533242 MLKLQ8NB16 471 aa9.05□□□□□ -0.96
NEDD8-207ENST00000533242 CMASQ8NFW8 434 aaPredicted RBP9.05□□□□□ -0.96
NEDD8-207ENST00000533242 ENOX1Q8TC92 643 aaKnown RBP9.05□□□□□ -0.96
NEDD8-207ENST00000533242 BCL7CQ8WUZ0 217 aaPredicted RBP9.05□□□□□ -0.96
NEDD8-207ENST00000533242 NLRP7Q8WX94 980 aa9.05□□□□□ -0.96
NEDD8-207ENST00000533242 KLHL5Q96PQ7 755 aa9.05□□□□□ -0.96
NEDD8-207ENST00000533242 EMILIN2Q9BXX0 1053 aa9.05□□□□□ -0.96
NEDD8-207ENST00000533242 GCOM2Q9BZD3 368 aaPredicted RBP9.05□□□□□ -0.96
NEDD8-207ENST00000533242 KCNK12Q9HB15 430 aa9.05□□□□□ -0.96
NEDD8-207ENST00000533242 WDR64B1ANS9 1081 aa9.05□□□□□ -0.96
NEDD8-207ENST00000533242 XBP1P17861 261 aa9.05□□□□□ -0.96
NEDD8-207ENST00000533242 CIITAP33076 1130 aa9.05□□□□□ -0.96
NEDD8-207ENST00000533242 NLRP5P59047 1200 aa9.05□□□□□ -0.96
NEDD8-207ENST00000533242 PRKCEQ02156 737 aa9.05□□□□□ -0.96
NEDD8-207ENST00000533242 NOMO2Q5JPE7 1267 aa9.05□□□□□ -0.96
NEDD8-207ENST00000533242 GLB1LQ6UWU2 654 aa9.05□□□□□ -0.96
NEDD8-207ENST00000533242 CYP26C1Q6V0L0 522 aa9.05□□□□□ -0.96
NEDD8-207ENST00000533242 C15orf39Q6ZRI6 1047 aa9.05□□□□□ -0.96
NEDD8-207ENST00000533242 TRMT1LQ7Z2T5 733 aaKnown RBP9.05□□□□□ -0.96
NEDD8-207ENST00000533242 C4orf32Q8N8J7 132 aa9.05□□□□□ -0.96
NEDD8-207ENST00000533242 LRRC15Q8TF66 581 aa9.05□□□□□ -0.96
NEDD8-207ENST00000533242 ZNF668Q96K58 619 aaPredicted RBP9.05□□□□□ -0.96
NEDD8-207ENST00000533242 RHOBTB2Q9BYZ6 727 aa9.05□□□□□ -0.96
NEDD8-207ENST00000533242 TBC1D13Q9NVG8 400 aa9.05□□□□□ -0.96
NEDD8-207ENST00000533242 WNT16Q9UBV4 365 aa9.05□□□□□ -0.96
NEDD8-207ENST00000533242 SAMM50Q9Y512 469 aa9.05□□□□□ -0.96
NEDD8-207ENST00000533242 A0A0U1RQJ8 604 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 PP2D1A8MPX8 630 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 PPP1R3GB7ZBB8 358 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 ZNF862O60290 1169 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 LMNAP02545 664 aaKnown RBP9.04□□□□□ -0.96
NEDD8-207ENST00000533242 RAB27AP51159 221 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 CLCN4P51793 760 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 TBC1D8BQ0IIM8 1120 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 MTF1Q14872 753 aa9.04□□□□□ -0.96
NEDD8-207ENST00000533242 NONOQ15233 471 aaKnown RBP eCLIP9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms