RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 OPHN1O60890 802 aa5.38□□□□□ -1.55
CD44-235ENST00000532339 HNRNPLP14866 589 aaKnown RBP eCLIP5.38□□□□□ -1.55
CD44-235ENST00000532339 POU3F2P20265 443 aaPredicted RBP5.38□□□□□ -1.55
CD44-235ENST00000532339 ELAVL1Q15717 326 aaKnown RBP5.38□□□□□ -1.55
CD44-235ENST00000532339 SLC15A2Q16348 729 aa5.38□□□□□ -1.55
CD44-235ENST00000532339 FKBP15Q5T1M5 1219 aa5.38□□□□□ -1.55
CD44-235ENST00000532339 SDE2Q6IQ49 451 aa5.38□□□□□ -1.55
CD44-235ENST00000532339 MFSD5Q6N075 450 aa5.38□□□□□ -1.55
CD44-235ENST00000532339 ZNF662Q6ZS27 426 aa5.38□□□□□ -1.55
CD44-235ENST00000532339 C16orf86Q6ZW13 317 aa5.38□□□□□ -1.55
CD44-235ENST00000532339 ZNF483Q8TF39 744 aaPredicted RBP5.38□□□□□ -1.55
CD44-235ENST00000532339 RTF1Q92541 710 aaKnown RBP5.38□□□□□ -1.55
CD44-235ENST00000532339 APPBP2Q92624 585 aa5.38□□□□□ -1.55
CD44-235ENST00000532339 HIST1H2AHQ96KK5 128 aa5.38□□□□□ -1.55
CD44-235ENST00000532339 HIST1H2AJQ99878 128 aa5.38□□□□□ -1.55
CD44-235ENST00000532339 NOL10Q9BSC4 688 aaKnown RBP5.38□□□□□ -1.55
CD44-235ENST00000532339 OSBPL6Q9BZF3 934 aa5.38□□□□□ -1.55
CD44-235ENST00000532339 POFUT1Q9H488 388 aa5.38□□□□□ -1.55
CD44-235ENST00000532339 ZMAT4Q9H898 229 aa5.38□□□□□ -1.55
CD44-235ENST00000532339 H2AFY2Q9P0M6 372 aaPredicted RBP5.38□□□□□ -1.55
CD44-235ENST00000532339 LRPPRCP42704 1394 aaKnown RBP5.38□□□□□ -1.55
CD44-235ENST00000532339 DHX57Q6P158 1386 aaKnown RBP5.38□□□□□ -1.55
CD44-235ENST00000532339 CCDC18Q5T9S5 1454 aa5.38□□□□□ -1.55
CD44-235ENST00000532339 FOXN1O15353 648 aa5.37□□□□□ -1.55
CD44-235ENST00000532339 FSBPO95073 299 aa5.37□□□□□ -1.55
CD44-235ENST00000532339 PEX11BO96011 259 aa5.37□□□□□ -1.55
CD44-235ENST00000532339 ADH4P08319 380 aa5.37□□□□□ -1.55
CD44-235ENST00000532339 MAKP20794 623 aa5.37□□□□□ -1.55
CD44-235ENST00000532339 KIR2DL3P43628 341 aa5.37□□□□□ -1.55
CD44-235ENST00000532339 MAN2A2P49641 1150 aa5.37□□□□□ -1.55
CD44-235ENST00000532339 DSG1Q02413 1049 aa5.37□□□□□ -1.55
CD44-235ENST00000532339 CNGB1Q14028 1251 aaPredicted RBP5.37□□□□□ -1.55
CD44-235ENST00000532339 LRRC32Q14392 662 aa5.37□□□□□ -1.55
CD44-235ENST00000532339 LRRTM3Q86VH5 581 aa5.37□□□□□ -1.55
CD44-235ENST00000532339 NINJ1Q92982 152 aa5.37□□□□□ -1.55
CD44-235ENST00000532339 ARL8AQ96BM9 186 aa5.37□□□□□ -1.55
CD44-235ENST00000532339 UIMC1Q96RL1 719 aa5.37□□□□□ -1.55
CD44-235ENST00000532339 MENTQ9BUN1 341 aa5.37□□□□□ -1.55
CD44-235ENST00000532339 TRIM8Q9BZR9 551 aa5.37□□□□□ -1.55
CD44-235ENST00000532339 USP36Q9P275 1121 aaKnown RBP5.37□□□□□ -1.55
CD44-235ENST00000532339 MRPL42Q9Y6G3 142 aaKnown RBP5.37□□□□□ -1.55
CD44-235ENST00000532339 SPATA31A3Q5VYP0 1347 aa5.37□□□□□ -1.55
CD44-235ENST00000532339 ZNF644Q9H582 1327 aaPredicted RBP5.37□□□□□ -1.55
CD44-235ENST00000532339 CCNB3Q8WWL7 1395 aa5.37□□□□□ -1.55
CD44-235ENST00000532339 CCDC141Q6ZP82 1450 aa5.37□□□□□ -1.55
CD44-235ENST00000532339 TULP4Q9NRJ4 1543 aa5.37□□□□□ -1.55
CD44-235ENST00000532339 EIF2AK4Q9P2K8 1649 aaKnown RBP5.37□□□□□ -1.55
CD44-235ENST00000532339 XRN1Q8IZH2 1706 aaKnown RBP5.37□□□□□ -1.55
CD44-235ENST00000532339 TNRC18O15417 2968 aaPredicted RBP5.37□□□□□ -1.55
CD44-235ENST00000532339 MTSS1O43312 755 aa5.36□□□□□ -1.55
CD44-235ENST00000532339 CTCFP49711 727 aaPredicted RBP5.36□□□□□ -1.55
CD44-235ENST00000532339 SCNN1GP51170 649 aa5.36□□□□□ -1.55
CD44-235ENST00000532339 NPEPPSP55786 919 aa5.36□□□□□ -1.55
CD44-235ENST00000532339 SMAD3P84022 425 aaKnown RBP5.36□□□□□ -1.55
CD44-235ENST00000532339 PURAQ00577 322 aaKnown RBP5.36□□□□□ -1.55
CD44-235ENST00000532339 C21orf62-AS1Q17RA5 79 aa5.36□□□□□ -1.55
CD44-235ENST00000532339 FNDC7Q5VTL7 733 aa5.36□□□□□ -1.55
CD44-235ENST00000532339 UNQ6494/PRO21346Q6UXR6 183 aa5.36□□□□□ -1.55
CD44-235ENST00000532339 Q6ZRM9 215 aa5.36□□□□□ -1.55
CD44-235ENST00000532339 CMTM4Q8IZR5 234 aa5.36□□□□□ -1.55
CD44-235ENST00000532339 NXPE1Q8N323 547 aa5.36□□□□□ -1.55
CD44-235ENST00000532339 CHTF18Q8WVB6 975 aa5.36□□□□□ -1.55
CD44-235ENST00000532339 MMRN2Q9H8L6 949 aa5.36□□□□□ -1.55
CD44-235ENST00000532339 FANCLQ9NW38 375 aa5.36□□□□□ -1.55
CD44-235ENST00000532339 THG1LQ9NWX6 298 aaKnown RBP5.36□□□□□ -1.55
CD44-235ENST00000532339 NCDNQ9UBB6 729 aa5.36□□□□□ -1.55
CD44-235ENST00000532339 WDR33Q9C0J8 1336 aaKnown RBP5.36□□□□□ -1.55
CD44-235ENST00000532339 ARHGEF28Q8N1W1 1705 aaKnown RBP5.36□□□□□ -1.55
CD44-235ENST00000532339 CUL9Q8IWT3 2517 aa5.35□□□□□ -1.55
CD44-235ENST00000532339 NRAPQ86VF7 1730 aa5.35□□□□□ -1.55
CD44-235ENST00000532339 NALCNQ8IZF0 1738 aa5.35□□□□□ -1.55
CD44-235ENST00000532339 RRBP1Q9P2E9 1410 aaKnown RBP5.35□□□□□ -1.55
CD44-235ENST00000532339 ST20-MTHFSA0A0A6YYL1 179 aa5.35□□□□□ -1.55
CD44-235ENST00000532339 ZNF891A8MT65 544 aaPredicted RBP5.35□□□□□ -1.55
CD44-235ENST00000532339 MFAP3LO75121 409 aa5.35□□□□□ -1.55
CD44-235ENST00000532339 IPO13O94829 963 aaKnown RBP5.35□□□□□ -1.55
CD44-235ENST00000532339 KPNA1P52294 538 aaPredicted RBP5.35□□□□□ -1.55
CD44-235ENST00000532339 OCRLQ01968 901 aa5.35□□□□□ -1.55
CD44-235ENST00000532339 DPTQ07507 201 aa5.35□□□□□ -1.55
CD44-235ENST00000532339 SPIDRQ14159 915 aa5.35□□□□□ -1.55
CD44-235ENST00000532339 SART3Q15020 963 aaKnown RBP5.35□□□□□ -1.55
CD44-235ENST00000532339 GPR158Q5T848 1215 aa5.35□□□□□ -1.55
CD44-235ENST00000532339 EGFLAMQ63HQ2 1017 aa5.35□□□□□ -1.55
CD44-235ENST00000532339 CNNM4Q6P4Q7 775 aa5.35□□□□□ -1.55
CD44-235ENST00000532339 ESPNLQ6ZVH7 1005 aa5.35□□□□□ -1.55
CD44-235ENST00000532339 NIM1KQ8IY84 436 aa5.35□□□□□ -1.55
CD44-235ENST00000532339 C16orf71Q8IYS4 520 aaPredicted RBP5.35□□□□□ -1.55
CD44-235ENST00000532339 AHI1Q8N157 1196 aa5.35□□□□□ -1.55
CD44-235ENST00000532339 PPM1KQ8N3J5 372 aa5.35□□□□□ -1.55
CD44-235ENST00000532339 NEU4Q8WWR8 484 aaPredicted RBP5.35□□□□□ -1.55
CD44-235ENST00000532339 FERMT2Q96AC1 680 aa5.35□□□□□ -1.55
CD44-235ENST00000532339 GPR87Q9BY21 358 aa5.35□□□□□ -1.55
CD44-235ENST00000532339 REXO2Q9Y3B8 237 aaKnown RBP5.35□□□□□ -1.55
CD44-235ENST00000532339 PRAG1Q86YV5 1406 aa5.34□□□□□ -1.55
CD44-235ENST00000532339 MYPNQ86TC9 1320 aa5.34□□□□□ -1.55
CD44-235ENST00000532339 A0A0A6YYK5 440 aaPredicted RBP5.34□□□□□ -1.55
CD44-235ENST00000532339 NRP1O14786 923 aa5.34□□□□□ -1.55
CD44-235ENST00000532339 PCDH8O95206 1070 aa5.34□□□□□ -1.55
CD44-235ENST00000532339 TKFCQ3LXA3 575 aa5.34□□□□□ -1.55
CD44-235ENST00000532339 UNC5BQ8IZJ1 945 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms