RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 TRIM65Q6PJ69 517 aa22.81■■□□□ 1.24
VPS28-208ENST00000527797 CATSPER4Q7RTX7 472 aa22.81■■□□□ 1.24
VPS28-208ENST00000527797 SERINC5Q86VE9 423 aa22.81■■□□□ 1.24
VPS28-208ENST00000527797 CDR2LQ86X02 465 aaPredicted RBP22.81■■□□□ 1.24
VPS28-208ENST00000527797 EHBP1Q8NDI1 1231 aa22.81■■□□□ 1.24
VPS28-208ENST00000527797 CPB2Q96IY4 423 aa22.81■■□□□ 1.24
VPS28-208ENST00000527797 GANQ9H2C0 597 aa22.81■■□□□ 1.24
VPS28-208ENST00000527797 TMEM8AQ9HCN3 771 aa22.81■■□□□ 1.24
VPS28-208ENST00000527797 ZNHIT6Q9NWK9 470 aaKnown RBP22.81■■□□□ 1.24
VPS28-208ENST00000527797 SCN10AQ9Y5Y9 1956 aa22.81■■□□□ 1.24
VPS28-208ENST00000527797 ARHGAP6O43182 974 aa22.8■■□□□ 1.24
VPS28-208ENST00000527797 FGFR4P22455 802 aa22.8■■□□□ 1.24
VPS28-208ENST00000527797 FECHP22830 423 aa22.8■■□□□ 1.24
VPS28-208ENST00000527797 CLDN10P78369 228 aa22.8■■□□□ 1.24
VPS28-208ENST00000527797 SNX17Q15036 470 aa22.8■■□□□ 1.24
VPS28-208ENST00000527797 DPY19L2P1Q6NXN4 242 aa22.8■■□□□ 1.24
VPS28-208ENST00000527797 BRSK2Q8IWQ3 736 aa22.8■■□□□ 1.24
VPS28-208ENST00000527797 THNSL1Q8IYQ7 743 aa22.8■■□□□ 1.24
VPS28-208ENST00000527797 CELF4Q9BZC1 486 aaKnown RBP22.8■■□□□ 1.24
VPS28-208ENST00000527797 INTS2Q9H0H0 1204 aaKnown RBP22.8■■□□□ 1.24
VPS28-208ENST00000527797 UNC93B1Q9H1C4 597 aa22.8■■□□□ 1.24
VPS28-208ENST00000527797 PDE11AQ9HCR9 933 aa22.8■■□□□ 1.24
VPS28-208ENST00000527797 CPSF3Q9UKF6 684 aaKnown RBP22.8■■□□□ 1.24
VPS28-208ENST00000527797 A0A1B0GUA9 196 aa22.79■■□□□ 1.24
VPS28-208ENST00000527797 TNFSF9P41273 254 aa22.79■■□□□ 1.24
VPS28-208ENST00000527797 APBA1Q02410 837 aa22.79■■□□□ 1.24
VPS28-208ENST00000527797 PTGISQ16647 500 aa22.79■■□□□ 1.24
VPS28-208ENST00000527797 SLC9C1Q4G0N8 1177 aa22.79■■□□□ 1.24
VPS28-208ENST00000527797 RRAGAQ7L523 313 aa22.79■■□□□ 1.24
VPS28-208ENST00000527797 TMTC1Q8IUR5 882 aa22.79■■□□□ 1.24
VPS28-208ENST00000527797 DNAJC5GQ8N7S2 189 aa22.79■■□□□ 1.24
VPS28-208ENST00000527797 BAP1Q92560 729 aa22.79■■□□□ 1.24
VPS28-208ENST00000527797 ADPGKQ9BRR6 497 aa22.79■■□□□ 1.24
VPS28-208ENST00000527797 NUCKS1Q9H1E3 243 aaKnown RBP22.79■■□□□ 1.24
VPS28-208ENST00000527797 SIX2Q9NPC8 291 aa22.79■■□□□ 1.24
VPS28-208ENST00000527797 NLRC4Q9NPP4 1024 aa22.79■■□□□ 1.24
VPS28-208ENST00000527797 FBXL5Q9UKA1 691 aa22.79■■□□□ 1.24
VPS28-208ENST00000527797 UCHL3P15374 230 aa22.79■■□□□ 1.24
VPS28-208ENST00000527797 TNNI1P19237 187 aa22.79■■□□□ 1.24
VPS28-208ENST00000527797 MRPS6P82932 125 aaKnown RBP22.79■■□□□ 1.24
VPS28-208ENST00000527797 SURF1Q15526 300 aa22.79■■□□□ 1.24
VPS28-208ENST00000527797 KYAT1Q16773 422 aa22.79■■□□□ 1.24
VPS28-208ENST00000527797 EPC2Q52LR7 807 aa22.79■■□□□ 1.24
VPS28-208ENST00000527797 PDXDC1Q6P996 788 aa22.79■■□□□ 1.24
VPS28-208ENST00000527797 CYP26C1Q6V0L0 522 aa22.79■■□□□ 1.24
VPS28-208ENST00000527797 APBB1IPQ7Z5R6 666 aaPredicted RBP22.79■■□□□ 1.24
VPS28-208ENST00000527797 RPAINQ86UA6 219 aa22.79■■□□□ 1.24
VPS28-208ENST00000527797 TOPORSQ9NS56 1045 aaPredicted RBP22.79■■□□□ 1.24
VPS28-208ENST00000527797 DAAM1Q9Y4D1 1078 aa22.79■■□□□ 1.24
VPS28-208ENST00000527797 KBTBD13C9JR72 458 aa22.78■■□□□ 1.24
VPS28-208ENST00000527797 AXLP30530 894 aa22.78■■□□□ 1.24
VPS28-208ENST00000527797 KCNJ6P48051 423 aa22.78■■□□□ 1.24
VPS28-208ENST00000527797 LMO3Q8TAP4 145 aa22.78■■□□□ 1.24
VPS28-208ENST00000527797 CGRRF1Q99675 332 aa22.78■■□□□ 1.24
VPS28-208ENST00000527797 TRPV2Q9Y5S1 764 aa22.78■■□□□ 1.24
VPS28-208ENST00000527797 LRRC53A6NM62 1247 aa22.77■■□□□ 1.24
VPS28-208ENST00000527797 HNRNPH3P31942 346 aaKnown RBP22.77■■□□□ 1.24
VPS28-208ENST00000527797 WNT7BP56706 349 aa22.77■■□□□ 1.24
VPS28-208ENST00000527797 MEA1Q16626 185 aa22.77■■□□□ 1.24
VPS28-208ENST00000527797 SV2AQ7L0J3 742 aa22.77■■□□□ 1.24
VPS28-208ENST00000527797 TMEM40Q8WWA1 233 aa22.77■■□□□ 1.24
VPS28-208ENST00000527797 PLAGL2Q9UPG8 496 aa22.77■■□□□ 1.24
VPS28-208ENST00000527797 COQ4Q9Y3A0 265 aa22.77■■□□□ 1.24
VPS28-208ENST00000527797 A0A1W2PQ45 241 aaPredicted RBP22.76■■□□□ 1.23
VPS28-208ENST00000527797 A0A1W2PQY0 241 aa22.76■■□□□ 1.23
VPS28-208ENST00000527797 CLTAP09496 248 aa22.76■■□□□ 1.23
VPS28-208ENST00000527797 HOXA11P31270 313 aaPredicted RBP22.76■■□□□ 1.23
VPS28-208ENST00000527797 OSTNP61366 133 aa22.76■■□□□ 1.23
VPS28-208ENST00000527797 POU5F1Q01860 360 aaKnown RBP22.76■■□□□ 1.23
VPS28-208ENST00000527797 PTK7Q13308 1070 aa22.76■■□□□ 1.23
VPS28-208ENST00000527797 DCAF4L1Q3SXM0 396 aa22.76■■□□□ 1.23
VPS28-208ENST00000527797 FBXL13Q8NEE6 735 aa22.76■■□□□ 1.23
VPS28-208ENST00000527797 ZNF516Q92618 1163 aa22.76■■□□□ 1.23
VPS28-208ENST00000527797 RPF1Q9H9Y2 349 aaKnown RBP22.76■■□□□ 1.23
VPS28-208ENST00000527797 PAK6Q9NQU5 681 aaPredicted RBP22.76■■□□□ 1.23
VPS28-208ENST00000527797 STARD7Q9NQZ5 370 aa22.76■■□□□ 1.23
VPS28-208ENST00000527797 PHF24Q9UPV7 400 aa22.76■■□□□ 1.23
VPS28-208ENST00000527797 NOD1Q9Y239 953 aa22.76■■□□□ 1.23
VPS28-208ENST00000527797 FHOD1Q9Y613 1164 aa22.76■■□□□ 1.23
VPS28-208ENST00000527797 CDY2AQ9Y6F7 541 aa22.76■■□□□ 1.23
VPS28-208ENST00000527797 STAG3L1P0CL83 205 aa22.75■■□□□ 1.23
VPS28-208ENST00000527797 AP3M2P53677 418 aa22.75■■□□□ 1.23
VPS28-208ENST00000527797 SFMBT2Q5VUG0 894 aa22.75■■□□□ 1.23
VPS28-208ENST00000527797 NOTUMQ6P988 496 aa22.75■■□□□ 1.23
VPS28-208ENST00000527797 WDR59Q6PJI9 974 aa22.75■■□□□ 1.23
VPS28-208ENST00000527797 CEP120Q8N960 986 aa22.75■■□□□ 1.23
VPS28-208ENST00000527797 SYN2Q92777 582 aaPredicted RBP22.75■■□□□ 1.23
VPS28-208ENST00000527797 WNT8BQ93098 351 aa22.75■■□□□ 1.23
VPS28-208ENST00000527797 FAM212AQ96EL1 285 aa22.75■■□□□ 1.23
VPS28-208ENST00000527797 SPAG5Q96R06 1193 aa22.75■■□□□ 1.23
VPS28-208ENST00000527797 APEX2Q9UBZ4 518 aa22.75■■□□□ 1.23
VPS28-208ENST00000527797 A0A0U1RQG5 324 aaPredicted RBP22.75■■□□□ 1.23
VPS28-208ENST00000527797 SOWAHDA6NJG2 315 aa22.75■■□□□ 1.23
VPS28-208ENST00000527797 ZNF500O60304 480 aaPredicted RBP22.75■■□□□ 1.23
VPS28-208ENST00000527797 IL18RAPO95256 599 aa22.75■■□□□ 1.23
VPS28-208ENST00000527797 MYCP01106 439 aaPredicted RBP22.75■■□□□ 1.23
VPS28-208ENST00000527797 RFX1P22670 979 aa22.75■■□□□ 1.23
VPS28-208ENST00000527797 CDK17Q00537 523 aa22.75■■□□□ 1.23
VPS28-208ENST00000527797 ENOX2Q16206 610 aaKnown RBP22.75■■□□□ 1.23
VPS28-208ENST00000527797 LMBRD2Q68DH5 695 aaPredicted RBP22.75■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms