RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 NOMO2Q5JPE7 1267 aa22.65■■□□□ 1.22
CD44-222ENST00000526025 FIBCD1Q8N539 461 aa22.65■■□□□ 1.22
CD44-222ENST00000526025 URGCPQ8TCY9 931 aa22.65■■□□□ 1.22
CD44-222ENST00000526025 HELQQ8TDG4 1101 aa22.65■■□□□ 1.22
CD44-222ENST00000526025 CLP1Q92989 425 aaKnown RBP22.65■■□□□ 1.22
CD44-222ENST00000526025 TIFAQ96CG3 184 aa22.65■■□□□ 1.22
CD44-222ENST00000526025 ACAP3Q96P50 834 aa22.65■■□□□ 1.22
CD44-222ENST00000526025 KCTD10Q9H3F6 313 aa22.65■■□□□ 1.22
CD44-222ENST00000526025 SNTG2Q9NY99 539 aa22.65■■□□□ 1.22
CD44-222ENST00000526025 AGO2Q9UKV8 859 aaKnown RBP22.65■■□□□ 1.22
CD44-222ENST00000526025 RWDD3Q9Y3V2 267 aa22.65■■□□□ 1.22
CD44-222ENST00000526025 ARL5CA6NH57 179 aa22.64■■□□□ 1.21
CD44-222ENST00000526025 TISP43B9A030 160 aa22.64■■□□□ 1.21
CD44-222ENST00000526025 CA3P07451 260 aa22.64■■□□□ 1.21
CD44-222ENST00000526025 IBSPP21815 317 aaPredicted RBP22.64■■□□□ 1.21
CD44-222ENST00000526025 YARSP54577 528 aaKnown RBP22.64■■□□□ 1.21
CD44-222ENST00000526025 XKR4Q5GH76 650 aa22.64■■□□□ 1.21
CD44-222ENST00000526025 RBM43Q6ZSC3 357 aaKnown RBP22.64■■□□□ 1.21
CD44-222ENST00000526025 NELFCDQ8IXH7 590 aa22.64■■□□□ 1.21
CD44-222ENST00000526025 CEP120Q8N960 986 aa22.64■■□□□ 1.21
CD44-222ENST00000526025 SAMD11Q96NU1 681 aa22.64■■□□□ 1.21
CD44-222ENST00000526025 TSPAN18Q96SJ8 248 aa22.64■■□□□ 1.21
CD44-222ENST00000526025 APOL6Q9BWW8 343 aa22.64■■□□□ 1.21
CD44-222ENST00000526025 IKZF4Q9H2S9 585 aa22.64■■□□□ 1.21
CD44-222ENST00000526025 PLEKHA5Q9HAU0 1116 aa22.64■■□□□ 1.21
CD44-222ENST00000526025 AGPAT3Q9NRZ7 376 aa22.64■■□□□ 1.21
CD44-222ENST00000526025 PARP2Q9UGN5 583 aa22.64■■□□□ 1.21
CD44-222ENST00000526025 GTF3C5Q9Y5Q8 519 aaPredicted RBP22.64■■□□□ 1.21
CD44-222ENST00000526025 LCHNA4D1U4 455 aa22.63■■□□□ 1.21
CD44-222ENST00000526025 LINC01553A4QN01 128 aa22.63■■□□□ 1.21
CD44-222ENST00000526025 ADRB2P07550 413 aa22.63■■□□□ 1.21
CD44-222ENST00000526025 HARSP12081 509 aaKnown RBP22.63■■□□□ 1.21
CD44-222ENST00000526025 AKAP5P24588 427 aa22.63■■□□□ 1.21
CD44-222ENST00000526025 GATMP50440 423 aa22.63■■□□□ 1.21
CD44-222ENST00000526025 MYBPC2Q14324 1141 aa22.63■■□□□ 1.21
CD44-222ENST00000526025 NFIL3Q16649 462 aa22.63■■□□□ 1.21
CD44-222ENST00000526025 ARMCX5Q6P1M9 558 aa22.63■■□□□ 1.21
CD44-222ENST00000526025 ALKAL1Q6UXT8 129 aa22.63■■□□□ 1.21
CD44-222ENST00000526025 SLC9A9Q8IVB4 645 aa22.63■■□□□ 1.21
CD44-222ENST00000526025 THNSL1Q8IYQ7 743 aa22.63■■□□□ 1.21
CD44-222ENST00000526025 GSTCDQ8NEC7 633 aa22.63■■□□□ 1.21
CD44-222ENST00000526025 GAD1Q99259 594 aa22.63■■□□□ 1.21
CD44-222ENST00000526025 KIAA1586Q9HCI6 787 aa22.63■■□□□ 1.21
CD44-222ENST00000526025 CPSF3Q9UKF6 684 aaKnown RBP22.63■■□□□ 1.21
CD44-222ENST00000526025 TRAF3IP3Q9Y228 551 aa22.63■■□□□ 1.21
CD44-222ENST00000526025 MYOGP15173 224 aa22.62■■□□□ 1.21
CD44-222ENST00000526025 MLH1P40692 756 aa22.62■■□□□ 1.21
CD44-222ENST00000526025 GRIK3Q13003 919 aa22.62■■□□□ 1.21
CD44-222ENST00000526025 STIM1Q13586 685 aa22.62■■□□□ 1.21
CD44-222ENST00000526025 CD302Q8IX05 232 aa22.62■■□□□ 1.21
CD44-222ENST00000526025 ADSSL1Q8N142 457 aa22.62■■□□□ 1.21
CD44-222ENST00000526025 SNX27Q96L92 541 aa22.62■■□□□ 1.21
CD44-222ENST00000526025 FBXL18Q96ME1 805 aa22.62■■□□□ 1.21
CD44-222ENST00000526025 RPS6KC1Q96S38 1066 aa22.62■■□□□ 1.21
CD44-222ENST00000526025 CBWD1Q9BRT8 395 aa22.62■■□□□ 1.21
CD44-222ENST00000526025 NKX2-4Q9H2Z4 354 aa22.62■■□□□ 1.21
CD44-222ENST00000526025 SLC28A3Q9HAS3 691 aa22.62■■□□□ 1.21
CD44-222ENST00000526025 TBC1D13Q9NVG8 400 aa22.62■■□□□ 1.21
CD44-222ENST00000526025 SOX1O00570 391 aaPredicted RBP22.61■■□□□ 1.21
CD44-222ENST00000526025 CALUO43852 315 aaPredicted RBP22.61■■□□□ 1.21
CD44-222ENST00000526025 EXTL3O43909 919 aa22.61■■□□□ 1.21
CD44-222ENST00000526025 LINC00271P0C7V0 271 aa22.61■■□□□ 1.21
CD44-222ENST00000526025 PRCPP42785 496 aa22.61■■□□□ 1.21
CD44-222ENST00000526025 TAP1Q03518 808 aa22.61■■□□□ 1.21
CD44-222ENST00000526025 KLHL40Q2TBA0 621 aa22.61■■□□□ 1.21
CD44-222ENST00000526025 PAN2Q504Q3 1202 aaKnown RBP22.61■■□□□ 1.21
CD44-222ENST00000526025 CCDC183Q5T5S1 534 aa22.61■■□□□ 1.21
CD44-222ENST00000526025 PPP2R2DQ66LE6 453 aa22.61■■□□□ 1.21
CD44-222ENST00000526025 FOXR2Q6PJQ5 311 aa22.61■■□□□ 1.21
CD44-222ENST00000526025 ZFP42Q96MM3 310 aa22.61■■□□□ 1.21
CD44-222ENST00000526025 HSPBP1Q9NZL4 362 aa22.61■■□□□ 1.21
CD44-222ENST00000526025 CNTN3Q9P232 1028 aa22.61■■□□□ 1.21
CD44-222ENST00000526025 MRPL42Q9Y6G3 142 aaKnown RBP22.61■■□□□ 1.21
CD44-222ENST00000526025 TTC26A0AVF1 554 aa22.6■■□□□ 1.21
CD44-222ENST00000526025 KCNE1P15382 129 aa22.6■■□□□ 1.21
CD44-222ENST00000526025 LAG3P18627 525 aa22.6■■□□□ 1.21
CD44-222ENST00000526025 BMP6P22004 513 aa22.6■■□□□ 1.21
CD44-222ENST00000526025 ERVK-21P61565 698 aa22.6■■□□□ 1.21
CD44-222ENST00000526025 ENOX2Q16206 610 aaKnown RBP22.6■■□□□ 1.21
CD44-222ENST00000526025 EDRF1Q3B7T1 1238 aa22.6■■□□□ 1.21
CD44-222ENST00000526025 SLC10A6Q3KNW5 377 aa22.6■■□□□ 1.21
CD44-222ENST00000526025 ZCWPW2Q504Y3 356 aa22.6■■□□□ 1.21
CD44-222ENST00000526025 CENPPQ6IPU0 288 aa22.6■■□□□ 1.21
CD44-222ENST00000526025 CRELD2Q6UXH1 353 aaPredicted RBP22.6■■□□□ 1.21
CD44-222ENST00000526025 LRRC55Q6ZSA7 311 aa22.6■■□□□ 1.21
CD44-222ENST00000526025 TMEM192Q8IY95 271 aa22.6■■□□□ 1.21
CD44-222ENST00000526025 SMYD4Q8IYR2 804 aaPredicted RBP22.6■■□□□ 1.21
CD44-222ENST00000526025 GPD1LQ8N335 351 aa22.6■■□□□ 1.21
CD44-222ENST00000526025 SYAP1Q96A49 352 aaPredicted RBP22.6■■□□□ 1.21
CD44-222ENST00000526025 DHTKD1Q96HY7 919 aaPredicted RBP22.6■■□□□ 1.21
CD44-222ENST00000526025 TGS1Q96RS0 853 aaKnown RBP22.6■■□□□ 1.21
CD44-222ENST00000526025 CWH43Q9H720 699 aa22.6■■□□□ 1.21
CD44-222ENST00000526025 RPF1Q9H9Y2 349 aaKnown RBP22.6■■□□□ 1.21
CD44-222ENST00000526025 DMAC2Q9NW81 257 aa22.6■■□□□ 1.21
CD44-222ENST00000526025 INPP5FQ9Y2H2 1132 aa22.6■■□□□ 1.21
CD44-222ENST00000526025 MYO9BQ13459 2157 aa22.59■■□□□ 1.21
CD44-222ENST00000526025 PTGESO14684 152 aa22.59■■□□□ 1.21
CD44-222ENST00000526025 PSMA7O14818 248 aa22.59■■□□□ 1.21
CD44-222ENST00000526025 TNFSF9P41273 254 aa22.59■■□□□ 1.21
CD44-222ENST00000526025 SCNN1GP51170 649 aa22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms